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1473 commits

Author SHA1 Message Date
Todd Gamblin
57e495943f Merge pull request #757 from glennpj/extend_r 
Make R extendable
 2016-05-10 01:30:13 -07:00
Todd Gamblin
b1da3664ec Merge pull request #795 from adamjstewart/features/argcomplete 
Add argcomplete python package
 2016-05-10 01:29:08 -07:00
Todd Gamblin
87c772b117 Merge pull request #845 from davydden/openblas_cleanup_unit_test 
openblas: fix a bug and cleanup the unit test
 2016-05-10 01:28:49 -07:00
Todd Gamblin
ccccd7b60d Merge pull request #806 from davydden/openblas_openmp_clang 
openblas: do not use OpenMP with Clang
 2016-05-10 01:28:12 -07:00
Todd Gamblin
f21fcb3b88 Merge pull request #798 from jgalarowicz/osscbtf-changes 
Update the main Krell Institute and Argo Navis Tech. packages for MPI…
 2016-05-10 01:26:48 -07:00
Todd Gamblin
d2004a186c Merge pull request #825 from xjrc/packages/scotch 
Update Package : Scotch
 2016-05-10 01:26:21 -07:00
Todd Gamblin
0f427ed334 Tweak nccmp to be more spack-compatible. 
- Spack doesn't set F90, but it confuses the nccmp build.  Just remove
  it from the environment.

- TODO: should build environment unset this variable?
 2016-05-10 01:07:34 -07:00
Todd Gamblin
1cc94a0f79 Merge branch 'efischer/160425-nccmp' of git://github.com/citibeth/spack into citibeth-efischer/160425-nccmp 2016-05-10 01:04:46 -07:00
Todd Gamblin
1568e64f95 Merge pull request #862 from davydden/glib_libxcb_missing_dependencies 
Glib libxcb missing dependencies
 2016-05-10 00:57:27 -07:00
Todd Gamblin
5e471719a6 Merge pull request #907 from eschnett/eschnett/binutils-werror 
Disable -Werror
 2016-05-10 00:54:24 -07:00
Todd Gamblin
2fde72075f Merge pull request #918 from hegner/bugfix/bison 
Add missing m4 dependency to bison
 2016-05-10 00:54:04 -07:00
Todd Gamblin
e672e10219 Merge pull request #912 from citibeth/efischer/160506-NCO 
nco: Added new package
 2016-05-10 00:53:51 -07:00
Todd Gamblin
a996b8aa7f Merge pull request #919 from jppelteret/bugfix/gmsh-2 
GMsh: Fix binary linking against its own libraries
 2016-05-10 00:53:22 -07:00
Todd Gamblin
813fefbc71 Merge pull request #922 from bcouturi/gdbupdate 
Added gdb 7.11 released on 24 Feb 2016
 2016-05-10 00:53:00 -07:00
Todd Gamblin
e3115aa505 Kripke variants. 2016-05-10 00:31:06 -07:00
alalazo
474048ae8b openmpi : fixes #920, added sqlite as a dependency 
The default for the variant `pmi` has been set to `False`
 `sqlite` is now a dependency if `+sqlite3`
 2016-05-10 09:02:16 +02:00
alalazo
405b04efab Merge branch 'develop' of https://github.com/LLNL/spack into openmpi_variants 2016-05-10 08:40:26 +02:00
Denis Davydov
b063ab42bf openblas: fix and cleanup the unit test 2016-05-10 07:33:57 +02:00
Todd Gamblin
2e0ee5404d clean up Kripke package and dependencies. 2016-05-09 17:14:25 -07:00
Todd Gamblin
92b7534885 Merge branch 'features/kripke' of git://github.com/tzislam/spack into tzislam-features/kripke 2016-05-09 17:00:47 -07:00
Tanzima Z. Islam
23ec6c6bb0 Removed FIXME comments 2016-05-09 16:34:27 -07:00
Tanzima Z. Islam
045e5bd458 Adding a new package: Kripke from the public tar ball 2016-05-09 16:22:07 -07:00
Joseph Ciurej
ceab445b9f Integrated improvements from PR #893 to remove hardcoded MPI path. 2016-05-09 14:39:42 -07:00
Joseph Ciurej
88d2f6b83a Enabled the '+esmumps' variant for 'scotch@:6.0.0'. 
Added support for 'scotch@6.0.0'.
 2016-05-09 14:19:42 -07:00
Joseph Ciurej
7e6be184bc Updated and fixed the Scotch package. 
- Fixed a bug that was causing shared library usage to fail when linking with another application.
- Updated the repository URL to allow for more general version downloading.
- Added installation support for version 5.1.10b.
- Cleaned up the installation file to make it a bit easier to follow and modify.
 2016-05-09 14:19:42 -07:00
Ben Couturier
3948b082ad Added gdb 7.11 2016-05-09 22:32:46 +02:00
Jean-Paul Pelteret
970196d825 GMsh: Fix binary linking against its own libraries 
GMsh binary now links against full path name of libraries. This fixes
problems, such as `dyld: Library not loaded: libGmsh.2.11.dylib`, when
running the executable.
 2016-05-09 14:23:07 +02:00
Benedikt Hegner
6e07f46df8 add missing m4 dependency to bison 2016-05-09 14:02:41 +02:00
alalazo
3d7684277a Merge branch 'openmpi_variants' of github.com:epfl-scitas/spack into openmpi_variants 
Conflicts:
	var/spack/repos/builtin/packages/openmpi/package.py
 2016-05-09 10:56:26 +02:00
alalazo
497ed9f933 Merge branch 'develop' of https://github.com/LLNL/spack into openmpi_variants 
Conflicts:
	var/spack/repos/builtin/packages/openmpi/package.py
 2016-05-09 08:23:30 +02:00
Todd Gamblin
ea408cc0d0 Merge pull request #911 from castillo23/packages/crypto 
add support for crypto version 5.6.1
 2016-05-08 14:40:21 -07:00
Todd Gamblin
7145b72482 Merge pull request #914 from trws/packages-leading-to-neovim 
pile of dependencies for neovim, including luajit and libuv
 2016-05-08 14:37:51 -07:00
Todd Gamblin
bd63545b0c Merge pull request #913 from trws/mpi-should-have-pmi 
add pmi support and process managers to the MPIs
 2016-05-08 14:36:38 -07:00
Jean-Paul Pelteret
95c7f4fba3 Fixes #915 2016-05-08 16:53:31 +02:00
Denis Davydov
72b91758c9 openblas: raise an error when using +openmp with clang; set +openmp to false by default 2016-05-08 16:51:06 +02:00
Massimiliano Culpo
7d5bb088b4 Merge branch 'develop' of https://github.com/LLNL/spack into openmpi_variants 
Conflicts:
	var/spack/repos/builtin/packages/openmpi/package.py
 2016-05-07 15:08:27 +02:00
Tom Scogland
22afc6dadd pile of dependencies for neovim, including luajit and libuv 2016-05-06 15:33:26 -07:00
Tom Scogland
7ec28231d9 Merge pull request #906 from adamjstewart/features/xerces-c 
Remove FIXME comments
 2016-05-06 15:30:09 -07:00
Tom Scogland
1de110fbba Merge pull request #794 from adamjstewart/features/jpeg 
Add latest jpeg version
 2016-05-06 15:20:43 -07:00
Tom Scogland
7dbf6f97f6 Merge pull request #841 from eschnett/eschnett/hwloc 
Update hwloc to 1.11.3
 2016-05-06 15:19:16 -07:00
Tom Scogland
1cf2526a79 Merge pull request #865 from davydden/silver_searcher_dependencies 
the_silver_searcher: add missing dependency
 2016-05-06 15:18:50 -07:00
Tom Scogland
86449790fe add pmi support and process managers to the MPIs 2016-05-06 15:15:40 -07:00
Elizabeth Fischer
c82db2116b nco: Added new package 2016-05-06 17:42:42 -04:00
Cecilia W. Castillo
7bf724b1d3 add support for crypto version 5.6.1 2016-05-06 14:14:13 -07:00
Tanzima Z. Islam
9f212e7201 Adding a new package file for Kripke 2016-05-06 13:50:34 -07:00
Erik Schnetter
db80c5e97e Disable -Werror 
This leads to problems if new compiler versions report new kinds of warnings.
 2016-05-05 21:11:54 -04:00
Adam J. Stewart
1203a14563 Remove tutorial comments 2016-05-05 14:01:21 -05:00
Robert D. French
18d2b28c49 Build and install BBCP 
Build and install BBCP

Use correct destination for install
 2016-05-05 10:58:24 -04:00
Todd Gamblin
10b0cb108c Merge pull request #893 from davydden/mpi_dependent_env 
Introduce variables for MPI compiler wrappers and document their usage
 2016-05-05 01:40:11 -07:00
Denis Davydov
c3bc4d6195 mpich: remove module.mpicc as no formula is using it and it is a duplicate of self.spec.mpicc 2016-05-05 10:28:04 +02:00
Denis Davydov
b12fb7ebc8 mpi: move mpicc/mpicxx/mpifc/mpif77 to setup_dependent_package() 2016-05-05 10:24:32 +02:00
Todd Gamblin
56557f7ff6 Merge pull request #871 from davydden/dealii_updated_dependencies 
dealii: add new dependency -- gsl
 2016-05-05 01:00:55 -07:00
Todd Gamblin
4ee1bca1d9 Merge pull request #881 from KineticTheory/pkg-superlu-dist 
+ Add version 5.0 download for SuperLU_DIST.
 2016-05-05 00:57:24 -07:00
Todd Gamblin
c6a7af3fa7 Merge pull request #885 from davydden/p4est_test_option 
p4est: put back +tests variant
 2016-05-05 00:53:58 -07:00
Todd Gamblin
d00680a883 Merge pull request #886 from eschnett/eschnett/openblas-make 
Disable OpenBLAS's overriding of our "make -jN" option
 2016-05-05 00:53:47 -07:00
Todd Gamblin
c7f23ca0d6 Merge pull request #887 from adamjstewart/features/openmpi 
Re-add hwloc as a dependency of openmpi
 2016-05-05 00:53:10 -07:00
Todd Gamblin
d0acc9827a Merge pull request #884 from davydden/libtool_missing_dependency 
libtool: add a missing dependency
 2016-05-05 00:52:39 -07:00
Todd Gamblin
c1010c3422 Merge pull request #889 from adamjstewart/features/netcdf 
Remove hdf5 ~cxx constraint on netcdf
 2016-05-05 00:51:49 -07:00
Todd Gamblin
1181ad2bf0 Merge pull request #891 from adamjstewart/features/gcc 
Add latest version of GCC
 2016-05-05 00:51:05 -07:00
Todd Gamblin
053e687e79 Merge pull request #800 from eschnett/eschnett/qthreads 
Add some qthreads patches
 2016-05-05 00:49:32 -07:00
Todd Gamblin
7ac8ddde96 Merge pull request #897 from robertdfrench/https-urls-for-subversion 
Build Subversion with HTTP/S support
 2016-05-05 00:20:59 -07:00
Todd Gamblin
3dd5b2845b Merge pull request #900 from eschnett/eschnett/flex 
Update Flex to 2.6.0
 2016-05-05 00:11:50 -07:00
Todd Gamblin
55f1cafb70 Merge pull request #899 from LLNL/bugfix/github-808-mrnet 
added git commit for clang support
 2016-05-05 00:11:19 -07:00
Dhanannjay 'Djay' Deo
ef202fbe0c Build static and shared libraries for silo 2016-05-04 22:50:15 -04:00
Dhanannjay 'Djay' Deo
45e77e7739 Correctly extend std_cmake_args 2016-05-04 22:49:47 -04:00
Dhanannjay 'Djay' Deo
1785de0f31 remove hdf5 which is silo actually a silo dependency 2016-05-04 22:08:01 -04:00
Erik Schnetter
27de2a42d9 Update Flex to 2.6.0 2016-05-04 20:27:58 -04:00
Greg Lee
514a8c737a added git commit for clang support 2016-05-04 16:38:43 -07:00
Dhanannjay 'Djay' Deo
32f7b06a36 Add version 2.10.2 2016-05-04 18:14:38 -04:00
Patrick Gartung
67d64b804f more succinctly 2016-05-04 23:53:10 +02:00
Robert.French
bfe009f98d Subversion uses serf for http repos 
Add Scons package

Add serf package

Subversion uses serf for http repos
 2016-05-04 16:16:36 +00:00
Denis Davydov
796bf5f85c mvapich2: add self.spec.[mpicc|mpicxx|mpifc|mpif77] 2016-05-04 17:33:19 +02:00
Patrick Gartung
7eb463a66e only fail when it is apples clang 2016-05-04 15:05:56 +02:00
Denis Davydov
f417b1cf90 p4est: use mpicc,mpicxx,mpifc,mpif77 compiler variables instead of hardcoding names 2016-05-04 11:51:45 +02:00
Denis Davydov
c3317819cb mpi: add self.spec.[mpicc|mpicxx|mpifc|mpif77] to avoid hardcoding MPI wrappers names 2016-05-04 10:37:52 +02:00
Adam J. Stewart
88fa9084e2 Add latest version of GCC 2016-05-03 15:58:14 -05:00
Adam J. Stewart
a3d2d0cd22 Add latest OpenSSL versions 2016-05-03 15:44:23 -05:00
Adam J. Stewart
eaa45d8a9a Remove hdf5 ~cxx constraint on netcdf 2016-05-03 13:28:38 -05:00
Kelly (KT) Thompson
f4260da1c2 Mark SuperLU_DIST version 4.3 as the preferred version since petsc and trilinos are not tested with 5.0. 2016-05-03 12:05:35 -06:00
Adam J. Stewart
51c6867f72 Re-add hwloc as a dependency of openmpi 2016-05-03 10:30:35 -05:00
Erik Schnetter
40d578be95 Disable OpenBLAS's overriding of our "make -jN" option 2016-05-03 10:38:05 -04:00
Denis Davydov
0583bc9859 p4est: put back +tests variant 2016-05-03 16:21:10 +02:00
Denis Davydov
98f8192bde libtool: add a missing dependency 2016-05-03 15:15:55 +02:00
Kelly (KT) Thompson
89621faaea + Add version 5.0 download for SuperLU_DIST. 2016-05-02 20:21:03 -06:00
David Poliakoff
e74cc0df27 Updated docstring 2016-05-02 15:53:43 -07:00
David Poliakoff
afef04bb54 Added cnmem package` 2016-05-02 15:49:37 -07:00
David Poliakoff
179d308fe0 Added a package for the RAJA system 2016-05-02 14:32:57 -07:00
Todd Gamblin
372a455bea Merge pull request #873 from jppelteret/bugfix/paradiseo 
Add extra dependencies for Paradiseo
 2016-05-02 09:57:30 -07:00
Todd Gamblin
aa7444cd3d Merge pull request #870 from jppelteret/bugfix/glm 
Add missing dependency for glm
 2016-05-02 09:57:11 -07:00
Todd Gamblin
4fecf33416 Merge pull request #877 from vishalkenchan/develop 
bugfix: missing dependencies (m4) added for netcdf and autoconf
 2016-05-02 09:56:44 -07:00
Denis Davydov
2eb4248f90 dealii: fix a bug where P4EST_DIR was unconditionally requested 2016-05-02 18:53:13 +02:00
Denis Davydov
cde1d18399 dealii: add new dependency -- gsl 2016-05-02 18:53:13 +02:00
Todd Gamblin
999dda8f83 Merge pull request #708 from adamjstewart/fixes/qt 
Prevent use of system GTK+
 2016-05-02 09:41:51 -07:00
Todd Gamblin
568800c045 Merge pull request #875 from jppelteret/features/adol-c 
Added Adol-C package
 2016-05-02 09:30:23 -07:00
Adam J. Stewart
7255f6969b Merge branch 'develop' into features/argcomplete 2016-05-02 11:29:52 -05:00
Adam J. Stewart
17fa1b5007 Un-fix version 3 2016-05-02 11:28:20 -05:00
Adam J. Stewart
61e5ee5d63 Prevent use of system GTK+ 2016-05-02 11:28:20 -05:00
Massimiliano Culpo
cfc25d0a92 Merge branch 'develop' into openmpi_variants 2016-05-02 18:26:05 +02:00
Adam J. Stewart
9c3d8dae57 Add latest jpeg version 2016-05-02 11:17:38 -05:00
Adam J. Stewart
4e2154e58f Add argcomplete python package 2016-05-02 11:16:29 -05:00