Commit graph

24125 commits

Author SHA1 Message Date
Seth R. Johnson
c5be548046
New package: GNDS (#27176)
Adds a new package for the AMPX/SCALE implementation of the GNDS
interface,
https://www.oecd.org/publications/specifications-for-the-generalised-nuclear-database-structure-gnds-94d5e451-en.htm
.
2021-11-05 14:04:47 -06:00
Bernhard Kaindl
d9d1319442
qt: replace conflicts('%gcc@11:', when='@5.9:5.14') with -include limits (#27241)
Noting that missing numeric_limits was the cause of the compile issues
with gcc-11, I tested adding -include limits fixing @5.9:5.14%gcc@11.
Therefore, we can replace the conflicts('%gcc@11:', when='@5.9:5.14').

Co-authored-by: Bernhard Kaindl <bernhard.kaindl@ait.ac.at>
2021-11-05 14:06:31 -04:00
Theofilos Manitaras
549bd70449
py-mpi4py: Add newer versions (#27239)
* py-mpi4py: Add newer versions

* Address PR comments
2021-11-05 11:07:44 -06:00
Axel Huebl
4f692e4d9f
openPMD-api: 0.14.3 (#27211)
Add the latest release.
2021-11-05 10:53:03 -06:00
Massimiliano Culpo
0feb5ec70a
Prevent additional properties to be in the answer set when reusing specs (#27240)
* Prevent additional properties to be in the answer set when reusing specs

fixes #27237

The mechanism to reuse concrete specs relies on imposing
the set of constraints stemming from the concrete spec
being reused.

We also need to prevent that other constraints get added
to this set.
2021-11-05 10:52:44 -06:00
Peter Brady
178e15c39d
ctags uses custom autogen.sh script (#27229) 2021-11-05 09:46:09 -07:00
Sinan
0b4b731479
package/py-zarr_add_v2.10.2 (#27212)
* package/py-zarr_add_v2.10.2

* improve python dep version constraints

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2021-11-05 09:23:41 -05:00
Bernhard Kaindl
91c7c24260
hdf5: Skip racy test cases(which loop endless on many cores) (#27068) 2021-11-05 09:59:45 -04:00
Seth R. Johnson
42d8e9eeb5
trilinos: explicitly use variants instead of spec for TPLs (#27221)
Fixes https://github.com/spack/spack/pull/27188#issuecomment-961212214
2021-11-05 09:07:33 -04:00
Manuela Kuhn
d2c26fef46
r-readr: add 2.0.2 (#27177) 2021-11-05 06:34:40 -06:00
Mikhail Titov
d7ae9414c2
exaworks: swift-t package (#27234) 2021-11-05 10:46:35 +01:00
Carlos Bederián
b06198f1d4
gmsh: add dependency on gl and glu providers when +fltk (#27169) 2021-11-05 10:45:53 +01:00
Harmen Stoppels
8bb5ed8464
make version docs reflect reality (#27149)
* make version docs reflect reality

* typo and make things

* 2.6 -> 2.7 in example
2021-11-05 09:39:31 +00:00
Massimiliano Culpo
e93a2db8b7
hpx: simplify instrumentation_args function (#27226) 2021-11-05 02:34:40 -06:00
Todd Gamblin
e13e697067
commands: spack load --list alias for spack find --loaded (#27184)
See #25249 and https://github.com/spack/spack/pull/27159#issuecomment-958163679.
This adds `spack load --list` as an alias for `spack find --loaded`.  The new command is
not as powerful as `spack find --loaded`, as you can't combine it with all the queries or
formats that `spack find` provides.  However, it is more intuitively located in the command
structure in that it appears in the output of `spack load --help`.

The idea here is that people can use `spack load --list`  for simple stuff but fall back to
`spack find --loaded` if they need more.

- add help to `spack load --list` that references `spack find`
- factor some parts of `spack find` out to be called from `spack load`
- add shell tests
- update docs

Co-authored-by: Peter Josef Scheibel <scheibel1@llnl.gov>
Co-authored-by: Richarda Butler <39577672+RikkiButler20@users.noreply.github.com>
2021-11-05 00:58:29 -07:00
Simon Frasch
bfbf9deb74
spfft: add version 1.0.5 (#27223) 2021-11-05 01:52:37 -06:00
Simon Frasch
6bae3cd6bb
spla: add version 1.5.2 (#27222) 2021-11-05 08:45:34 +01:00
Todd Gamblin
8e76244266 docs for experimental --reuse argument to spack install
Add docs for `--reuse`, along with a warning that it will likely be
removed and refactored.
2021-11-05 00:15:47 -07:00
Gregory Becker
5efa76a033 error message for reusing multiple hashes for package 2021-11-05 00:15:47 -07:00
Todd Gamblin
ac1e05fe1b concretizer: add error messages and simplify asp.py 2021-11-05 00:15:47 -07:00
Massimiliano Culpo
0186f0f955 Fix logic program for multi-valued variants
Reformulate variant rules so that we minimize both

1. The number of non-default values being used
2. The number of default values not-being used

This is crucial for MV variants where we may have
more than one default value
2021-11-05 00:15:47 -07:00
Todd Gamblin
e0c3d074c0 bugfix: handle hashes that only exist in input specs
In our tests, we use concrete specs generated from mock packages,
which *only* occur as inputs to the solver. This fixes two problems:

1. We weren't previously adding facts to encode the necessary
   `depends_on()` relationships, and specs were unsatisfiable on
   reachability.

2. Our hash lookup for reconstructing the DAG does not
   consider that a hash may have come from the inputs.
2021-11-05 00:15:47 -07:00
Todd Gamblin
a4a2ed3c34 concretizer: exempt already-installed specs from compiler and variant rules
Concrete specs that are already installed or that come from a buildcache
may have compilers and variant settings that we do not recognize, but that
shouldn't prevent reuse (at least not until we have a more detailed compiler
model).

- [x] make sure compiler and variant consistency rules only apply to
      built specs
- [x] don't validate concrete specs on input, either -- they're concrete
      and we shouldn't apply today's rules to yesterday's build
2021-11-05 00:15:47 -07:00
Todd Gamblin
49ed41b028 spack diff: more flexible tests, restore transitive diff with spec_clauses
In switching to hash facts for concrete specs, we lost the transitive facts
from dependencies. This was fine for solves, because they were implied by
the imposed constraints from every hash. However, for `spack diff`, we want
to see what the hashes mean, so we need another mode for `spec_clauses()` to
show that.

This adds a `expand_hashes` argument to `spec_clauses()` that allows us to
output *both* the hashes and their implications on dependencies. We use
this mode in `spack diff`.
2021-11-05 00:15:47 -07:00
Massimiliano Culpo
3e3e84ba30 Add a missing definition in the logic program 2021-11-05 00:15:47 -07:00
Massimiliano Culpo
be2cf16b67 Add buildcache to reusable specs 2021-11-05 00:15:47 -07:00
Massimiliano Culpo
31dfad9c16 spack install: add --reuse argument 2021-11-05 00:15:47 -07:00
Massimiliano Culpo
e2744fafa1 spack concretize: add --reuse argument 2021-11-05 00:15:47 -07:00
Massimiliano Culpo
290f57c779 spack spec: add --reuse argument 2021-11-05 00:15:47 -07:00
Todd Gamblin
652fa663b5 concretizer: get rid of last maximize directive in concretize.lp
- [x] Get rid of forgotten maximize directive.
- [x] Simplify variant handling
- [x] Fix bug in treatment of defaults on externals (don't count
      non-default variants on externals against them)
2021-11-05 00:15:47 -07:00
Massimiliano Culpo
da57b8775f Update command completion 2021-11-05 00:15:47 -07:00
Massimiliano Culpo
0d74a4f46e Trim dependencies on externals 2021-11-05 00:15:47 -07:00
Massimiliano Culpo
0b80035eaa Fix a unit test to match the new OS semantics
CNL, debian6 and Suse are not compatible
2021-11-05 00:15:47 -07:00
Massimiliano Culpo
4d25fc0068 ASP-based solve: if an OS is set, respect the value 2021-11-05 00:15:47 -07:00
Massimiliano Culpo
6e297b9ba1 Fix a type in "variant_not_default" rule 2021-11-05 00:15:47 -07:00
Todd Gamblin
ace4586bf8 concretizer: rework spack solve output to handle reuse better 2021-11-05 00:15:47 -07:00
Todd Gamblin
c537785f6f spec: ensure_valid_variants() should not validate concrete specs
Variants in concrete specs are "always" correct -- or at least we assume
them to be b/c they were concretized before. Their variants need not match
the current version of the package.
2021-11-05 00:15:47 -07:00
Todd Gamblin
b60a95cd5d concretizer: unify handling of single- and multi-valued variants
Multi-valued variants previously maximized default values to handle
cases where the default contained two values, e.g.:

    variant("foo", default="bar,baz")

This is because previously we were minimizing non-default values, and
`foo=bar`, `foo=baz`, and `foo=bar,baz` all had the same score, as
none of them had any "non-default" values.

This commit changes the approach and considers a non-default value
to be either a value set to something not default *or* the absence
of a default value from the set value.  This allows multi- and
single-valued variants to be handled the same way, with the same
minimization criterion.  It alse means that the "best" value for every
optimization criterion is now zero, which allows us to make useful
assumptions about the optimization criteria.
2021-11-05 00:15:47 -07:00
Todd Gamblin
b88da9d73d concretizer: reuse installs, but assign default values for new builds
Minimizing builds is tricky. We want a minimizing criterion because
we want to reuse the avaialble installs, but we also want things that
have to be built to stick to *default preferences* from the package
and from the user. We therefore treat built specs differently and
apply a different set of optimization criteria to them. Spack's *first*
priority is to reuse what it can, but if it builds something, the built
specs will respect defaults and preferences.

This is implemented by bumping the priority of optimization criteria
for built specs -- so that they take precedence over the otherwise
topmost-priority criterion to reuse what is installed.

The scheme relies on all of our optimization criteria being minimizations.
That is, we need the case where all specs are reused to be better than
any built spec could be. Basically, if nothing is built, all the build
criteria are zero (the best possible) and the number of built packages
dominates. If something *has* to be built, it must be strictly worse
than full reuse, because:

  1. it increases the number of built specs
  2. it must have either zero or some positive number for all criteria

Our optimziation criteria effectively sum into two buckets at once to
accomplish this. We use a `build_priority()` number to shift the
priority of optimization criteria for built specs higher.
2021-11-05 00:15:47 -07:00
Todd Gamblin
cfb60ab9e1 tests: make spack diff test more lenient
The constraints in the `spack diff` test were very specific and assumed
a lot about the structure of what was being diffed. Relax them a bit to
make them more resilient to changes.
2021-11-05 00:15:47 -07:00
Todd Gamblin
9eb94be6dd concretizer: only minimize builds when --reuse is enabled.
Make the first minimization conditional on whether `--reuse` is enabled in the solve.
If `--reuse` is not enabled, there will be nothing in the set to minimize and the
objective function (for this criterion) will be 0 for every answer set.
2021-11-05 00:15:47 -07:00
Todd Gamblin
40b914503e concretizer: adjust integrity constraints to only apply to builds.
Many of the integrity constraints in the concretizer are there to restrict how solves are done, but
they ignore that past solves may have had different initial conditions. For example, for things
we're building, we want the allowed variants to be restricted to those currently in Spack packages,
but if we are reusing a concrete spec, we need to be flexible about names that may have existed in
old packages.

Similarly, restrictions around compatibility of OS's, compiler versions, compiler OS support, etc.
are really only about what is supported by the *current* set of compilers/build tools known to
Spack, not about what we may get from concrete specs.

- [x] restrict certain integrity constraints to only apply to packages that we need to build, and
      omit concrete specs from consideration.
2021-11-05 00:15:47 -07:00
Todd Gamblin
2c142f9dd4 concretizer: rework operating system semantics for installed packages
The OS logic in the concretizer is still the way it was in the first version.
Defaults are implemented in a fairly inflexible way using straight logic. Most
of the other sections have been reworked to leave these kinds of decisions to
optimization. This commit does that for OS's as well.

As with targets, we optimize for target matches. We also try to optimize for
OS matches between nodes. Additionally, this commit adds the notion of
"OS compatibility" where we allow for builds to depend on binaries for certain
other OS's. e.g, for macos, a bigsur build can depend on an already installed
(concrete) catalina build. One cool thing about this is that we can declare
additional compatible OS's later, e.g. CentOS and RHEL.
2021-11-05 00:15:47 -07:00
Todd Gamblin
9c70d51a4f concretizer: impose() for concrete specs should use body facts.
The concretizer doesn't get a say in whether constraints from
concrete specs are imposed, so use body facts for them.
2021-11-05 00:15:47 -07:00
Todd Gamblin
3866b3e7d3 include installed hashes in solve and optimize for reuse 2021-11-05 00:15:47 -07:00
Todd Gamblin
7abe4ab309 rename checked_spec_clauses() to spec_clauses() 2021-11-05 00:15:47 -07:00
Todd Gamblin
ad5d632eeb add --reuse option to spack solve 2021-11-05 00:15:47 -07:00
Sinan
288176326c
new package: librttopo (#27182)
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-11-04 21:01:42 -06:00
Alec Scott
82b45d112f
[New Package] Add Restic v0.12.1 (#27208)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-11-04 17:12:34 -07:00
Massimiliano Culpo
839057e98d
Rename the temporary scope for bootstrap buildcache (#27231)
If we don't rename Spack will fail with:
```
ImportError: cannot bootstrap the "clingo" Python module from spec "clingo-bootstrap@spack+python %gcc target=x86_64" due to the following failures:
    'spack-install' raised ValueError: Invalid config scope: 'bootstrap'.  Must be one of odict_keys(['_builtin', 'defaults', 'defaults/cray', 'bootstrap/cray', 'disable_modules', 'overrides-0'])
    Please run `spack -d spec zlib` for more verbose error messages
```
in case bootstrapping from binaries fails and we are
falling back to bootstrapping from sources.
2021-11-04 16:17:00 -07:00