Commit graph

31615 commits

Author SHA1 Message Date
Alec Scott
ab9ed91539
tig: add v2.5.8 (#37531) 2023-05-15 13:46:03 -07:00
Alec Scott
421256063e
trimgalore: add v0.6.9 (#37532) 2023-05-15 13:44:44 -07:00
Alec Scott
75459bc70c
vdt: add v0.4.4 (#37533) 2023-05-15 13:43:40 -07:00
Carson Woods
33752eabb8
Improve package source code context display on error (#37655)
Spack displays package code context when it shouldn't (e.g., on `FetchError`s)
and doesn't display it when it should (e.g., when errors occur in builder classes.
The line attribution can sometimes be off by one, as well.

- [x] Display package context when errors occur in a subclass of `PackageBase`
- [x] Display package context when errors occur in a subclass of `BaseBuilder`
- [x] Do not display package context when errors occur in `PackageBase`,
      `BaseBuilder` or other core code that is not in a `package.py` file.
- [x] Fix off-by-one error for core code (don't subtract one from the line number *unless*
      it's in an actual `package.py` file.

---------

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2023-05-15 13:38:11 -07:00
Alec Scott
f1d1bb9167
gsl-lite: add v0.41.0 (#37483) 2023-05-15 13:36:03 -07:00
Alec Scott
68eaff24b0
crtm-fix: correct invalid checksum for v2.4.0 (#37500) 2023-05-15 13:34:32 -07:00
Alec Scott
862024cae1
dos2unix: add v7.4.4 (#37512) 2023-05-15 13:31:19 -07:00
Adam J. Stewart
9d6bcd67c3
Update PyTorch ecosystem (#37562) 2023-05-15 13:29:44 -07:00
Chris White
d97ecfe147
SUNDIALS: new version of sundials and guard against examples being install (#37576)
* add new version of sundials and guard against examples not installing
* fix flipping of variant
* fix directory not being there when writing a file
2023-05-15 13:21:37 -07:00
Alec Scott
0d991de50a
subversion: add v1.14.2 (#37543) 2023-05-15 13:16:04 -07:00
Alec Scott
4f278a0255
go: add v1.20.4 (#37660)
* go: add v1.20.4
* Deprecate v1.20.2 and v1.19.7 due to CVE-2023-24538
2023-05-15 13:10:02 -07:00
Chris Green
6e72a3cff1
[davix] Enable third party copies with gSOAP (#37648)
* [davix] Enable third party copies with gSOAP

* Add FNAL Spack team to maintainers
2023-05-15 14:46:52 -05:00
snehring
1532c77ce6
micromamba: adding version 1.4.2 (#37594)
* micromamba: adding version 1.4.2
* micromamba: change to micromamba-1.4.2 tag artifacts
2023-05-15 10:40:54 -07:00
Mikael Simberg
5ffbce275c
Add ut (#37603) 2023-05-15 10:35:55 -07:00
Carsten Uphoff
0e2ff2dddb
Add double-batched FFT library v0.4.0 (#37616)
Signed-off-by: Carsten Uphoff <carsten.uphoff@intel.com>
2023-05-15 10:28:52 -07:00
Mikael Simberg
c0c446a095
stdexec: Add 23.03 (#37638) 2023-05-15 10:20:12 -07:00
snehring
33dbd44449
tmscore: adding new package (#37644) 2023-05-15 10:17:50 -07:00
Sean Koyama
7b0979c1e9
hwloc: explicitly disable building netloc for ~netloc (#35604)
* hwloc: explicitly disable building netloc for ~netloc

* hwloc: update syntax for netloc variant configure argument

---------

Co-authored-by: Sean Koyama <skoyama@anl.gov>
2023-05-15 12:16:21 -05:00
snehring
c9849dd41d
tmalign: new version 20220412 (#37645) 2023-05-15 10:14:58 -07:00
Chris Green
d44e97d3f2
[scitokens-cpp] New variant cxxstd, depend on standalone jwt-cpp (#37643)
* Add FNAL Spack team to maintainers
* New variant `cxxstd`
* Depend on `jwt-cpp`
* New versions: 0.7.2, 0.7.3
2023-05-15 13:08:00 -04:00
Adam J. Stewart
8713ab0f67
py-timm: add v0.9 (#37654)
* py-timm: add v0.9
* add v0.9.1 and v0.9.2
* add new package py-safetensors (v0.3.1)
2023-05-15 09:41:58 -07:00
Harmen Stoppels
6a47339bf8
oneapi: before script load modules (#37678) 2023-05-15 18:39:58 +02:00
Alec Scott
1c0fb6d641
amrfinder: add v3.11.8 (#37656) 2023-05-15 09:38:29 -07:00
Alec Scott
b45eee29eb
canal: add v1.1.6 (#37657) 2023-05-15 09:36:17 -07:00
Alec Scott
6d26274459
code-server: add v4.12.0 (#37658) 2023-05-15 09:35:17 -07:00
Alec Scott
2fb07de7bc
fplll: add v5.4.4 (#37659) 2023-05-15 09:34:13 -07:00
Alec Scott
7678dc6b49
iso-codes: add v4.15.0 (#37661) 2023-05-15 09:27:05 -07:00
Frank Willmore
1944dd55a7
Update package.py for maker (#37662) 2023-05-15 09:25:43 -07:00
Adam J. Stewart
0b6c724743
py-sphinx: add v7.0.1 (#37665) 2023-05-15 09:23:22 -07:00
eugeneswalker
fa98023375
new pkg: py-psana (#37666) 2023-05-15 09:19:54 -07:00
Todd Gamblin
e79a911bac bugfix: allow reuse of packages from foreign namespaces
We currently throw a nasty error if you try to reuse packages from some other namespace
(e.g., OLCF), but we should be able to reuse patched local versions of builtin packages.

Right now the only obstacle to that is that we try to look up virtual info for unknown
namespaces, and we can't get the package from the repo to do that. We *can* assume that
a package with a known namespace is similar, and that its virtual provider information
is reasonably accurate, so we now do that. This isn't 100% accurate, but neither is
relying on the package itself, as it may have gone out of date.

The real solution here is virtual edge information, but this is a stopgap until we have
that.
2023-05-15 09:15:49 -07:00
Todd Gamblin
fd3efc71fd bugfix: don't look up virtual information for unknown packages
`spec_clauses()` attempts to look up package information for concrete specs in order to
determine which virtuals they may provide. This fails for renamed/deleted dependencies
of buildcaches and installed packages.

This will eventually be fixed by #35258, which adds virtual information on edges, but we
need a workaround to make older buildcaches usable.

- [x] make an exception for renamed packages and omit their virtual constraints
- [x] add a note that this will be solved by adding virtuals to edges
2023-05-15 09:15:49 -07:00
Todd Gamblin
0458de18de bugfix: don't look up patches from packages for concrete specs
The concretizer can fail with `reuse:true` if a buildcache or installation contains a
package with a dependency that has been renamed or deleted in the main repo (e.g.,
`netcdf` was refactored to `netcdf-c`, `netcdf-fortran`, etc., but there are still
binary packages with dependencies called `netcdf`).

We should still be able to install things for which we are missing `package.py` files.

`Spec.inject_patches_variant()` was failing this requirement by attempting to look up
the package class for concrete specs.  This isn't needed -- we can skip it.

- [x] swap two conditions in `Spec.inject_patches_variant()`
2023-05-15 09:15:49 -07:00
Vanessasaurus
f94ac8c770
add new package flux-security (#37668)
I will follow this up with a variant to flux-core to add flux-security, and then automation in the flux-framework/spack repository.

Signed-off-by: vsoch <vsoch@users.noreply.github.com>
Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2023-05-15 09:14:44 -07:00
Andrew W Elble
a03c28a916
routinator: update, deprecate old version (#37676) 2023-05-15 09:10:40 -07:00
Victor Lopez Herrero
7b7fdf27f3
dlb: add v3.3 (#37677) 2023-05-15 09:08:57 -07:00
Sergey Kosukhin
192e564e26
hdf5: fix showconfig (#34920)
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2023-05-15 11:03:03 -05:00
Chris Green
b8c5099cde
[jwt-cpp] New package (#37641)
* [jwt-cpp] New package

* Update homepage

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* [@spackbot] updating style on behalf of greenc-FNAL

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
Co-authored-by: greenc-FNAL <greenc-FNAL@users.noreply.github.com>
2023-05-15 10:16:11 -05:00
Stephen Sachs
ea5bca9067
palace: add v0.11.1 and explicit BLAS support (#37605) 2023-05-15 16:11:50 +02:00
Harmen Stoppels
e33eafd34f
Bump tutorial command (#37674) 2023-05-15 13:54:52 +02:00
Xavier Delaruelle
e1344b5497
environment-modules: add version 5.3.0 (#37671) 2023-05-15 09:32:53 +02:00
Todd Gamblin
cf9dc3fc81
spack find: get rid of @= in arch/compiler headers (#37672)
The @= in `spack find` output adds a bit of noise. Remove it as we
did for `spack spec` and `spack concretize`.

This modifies display_specs so it actually covers other places we use that routine, as
well, e.g., `spack buildcache list`.

before:

```
-- linux-ubuntu20.04-aarch64 / gcc@=11.1.0 -----------------------
ofdlcpi libpressio@0.88.0
```

after:

```
-- linux-ubuntu20.04-aarch64 / gcc@11.1.0 -----------------------
ofdlcpi libpressio@0.88.0
```
2023-05-15 09:08:50 +02:00
Bruno Turcksin
d265dd2487
Kokkos: add new release and new architectures (#37650) 2023-05-14 13:21:40 -07:00
Greg Becker
a2a6e65e27
concretizer: don't change concrete environments without --force (#37438)
If a user does not explicitly `--force` the concretization of an entire environment,
Spack will try to reuse the concrete specs that are already in the lockfile.

---------

Co-authored-by: becker33 <becker33@users.noreply.github.com>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2023-05-14 13:36:03 +02:00
Paul R. C. Kent
0085280db8
gcc: add 12.3.0 (#37553) 2023-05-14 12:08:41 +02:00
Andrew W Elble
6e07bf149d
freecad: new package w/ dependencies/updates (#37557)
* freecad: new package w/ dependencies/updates

* review

* symbols/debug variants only when autotools
2023-05-13 21:14:50 -05:00
dale-mittleman
811cd5e7ef
Adding librdkafka versions 1.9.2, 2.0.2 (#37501)
Co-authored-by: Alec Scott <hi@alecbcs.com>
2023-05-13 16:00:12 -07:00
Adam J. Stewart
081e21f55e
py-lightly: py-torch~distributed supported in next release (#37558) 2023-05-13 15:49:45 -07:00
Todd Gamblin
c5a24675a1
spack spec: remove noisy @= from output (#37663)
@= is accurate, but noisy. Other UI commands tend not to
print the redundant `@=` for known concrete versions;
make `spack spec` consistent with them.
2023-05-13 11:34:15 -07:00
eugeneswalker
e9bfe5cd35
new pkg: py-psmon (#37652) 2023-05-13 11:16:44 -07:00