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Author SHA1 Message Date
Sajid Ali
f30b717744 Add libflame (#12193) 
* Add libflame

	new file:   var/spack/repos/builtin/packages/libflame/Makefile_5.1.0.patch
	new file:   var/spack/repos/builtin/packages/libflame/package.py

* 	modified:   var/spack/repos/builtin/packages/libflame/package.py
 2019-08-01 09:33:24 -05:00
Adam J. Stewart
61b824580e py-pyqt5: add missing py-enum34 dependency (#12224) 2019-08-01 13:30:35 +02:00
t-karatsu
9b03ab43ed bdw-gc: add variant for Multithreading (#12223) 2019-08-01 13:29:41 +02:00
Mark W. Krentel
e628f1b4eb unzip: fix build for cray back-end 
Fixes #12007.

The Cray cc wrappers don't handle the -s flag (strip) cleanly, It's
not essential to strip the binary, so just remove the flag on Cray.

Note: the default build on Cray is for the back end and the unzip
binary won't run on the front end.  To build for FE, use something
like arch=cray-fe-x86_64.
 2019-07-31 20:44:40 -07:00
Gregory Lee
2c2abb454c fix mpa package build error with a patch (#12217) 2019-07-31 16:48:06 -05:00
Gregory Lee
162f1338d9 patch launchmon to fix char * conversion error (#12219) 2019-07-31 16:47:35 -05:00
Rémi Lacroix
5c970613b6 Magma: fix prefix (#12220) 
`prefix` is not available in `cmake_args` method, use `self.prefix`.
Fixes #12214.
 2019-07-31 16:43:47 -05:00
Levi Baber
8ec9ebc92f should not need bin prefix on spack command (#12215) 2019-07-31 12:58:01 -05:00
Todd Gamblin
33701cc355
docs: update tutorial slides for PEARC19 2019-07-31 12:55:59 -05:00
Adam J. Stewart
f7d1df4d3a
Update Package Creation Tutorial for PEARC19 (#12209) 
* Update Package Creation Tutorial for PEARC19

* A few remaining fixes

* Fix section link
 2019-07-31 12:54:09 -05:00
Matthieu Dorier
65a1db87f8 Preventing jsoncpp from building tests (#11948) 
* Preventing jsoncpp from building tests
jsoncpp: making -DJSONCPP_WITH_TESTS=OFF conditioned by self.run_tests
 2019-07-31 12:18:25 -05:00
Christoph Junghans
4ea5e177cd
CMake: make ninja verbose as well (#12200) 2019-07-31 08:41:58 -06:00
Ondřej Čertík
7e61527f9e F18: Fix the location to the f18 binary (#12186) 2019-07-31 15:43:08 +02:00
jthies
ae1524821e phist: added version 1.8.0 (#12201) 2019-07-31 15:35:59 +02:00
t-karatsu
b744accaf6 igvtools: fixed query on jdk instead of java (#12195) 2019-07-31 14:49:51 +02:00
Javier Cervantes
a948954886 Print environment name when removing active env (#12198) 2019-07-31 14:40:11 +02:00
Adam J. Stewart
d973fca00e Fix Sphinx deprecation warning when building docs (#12205) 
* Fix Sphinx deprecation warning when building docs

* Set minimum required version of Sphinx
 2019-07-31 10:23:56 +02:00
Ryan S. Elliott
86ff5baed7 kim-api: added version 2.1.2 (#12189) 2019-07-31 09:13:13 +02:00
t-karatsu
268c806111 genomefinisher: fixed query on jdk instead of java (#12196) 2019-07-31 08:55:56 +02:00
Adam J. Stewart
db2bbbcecf
Add pandas 0.25.0 (#12173) 2019-07-30 17:16:32 -05:00
Adam J. Stewart
59e9541386
Add tables 3.5.2 (#12172) 2019-07-30 17:16:15 -05:00
Adam J. Stewart
60da9303c6
Update numexpr dependency version (#12168) 2019-07-30 17:15:38 -05:00
Adam J. Stewart
70512b8ba2
Add py-matplotlib 3.1.1 (#12164) 2019-07-30 17:15:20 -05:00
Adam J. Stewart
482152e092
Add py-wxpython package (#12163) 2019-07-30 17:13:32 -05:00
Adam J. Stewart
c1c5f58d12
Add py-cairocffi package (#12161) 2019-07-30 17:13:02 -05:00
Adam J. Stewart
b34da4e108
Add SIPPackage base class (#12157) 2019-07-30 17:12:48 -05:00
Adam J. Stewart
f487f87e3e
Add Magics 4.1.0 (#12078) 2019-07-30 17:11:47 -05:00
Adam J. Stewart
e728883c71
Add eccodes 2.13.0 (#12077) 2019-07-30 17:11:29 -05:00
Adam J. Stewart
354ef2f9ca
Allow bsseeker to build with Python 3 (#12075) 2019-07-30 17:11:14 -05:00
Adam J. Stewart
e13bc0212c
Add py-pipits 2.4 (#12074) 
* Add py-pipits 2.4

* Flake8 fix
 2019-07-30 17:10:57 -05:00
Justin S
175abecc0b mii: new package at 1.0.2 (#12184) 
* mii: new package at 1.0.2

* mii: fix improper formatting in description

* mii: add 1.0.3
 2019-07-30 16:16:41 -05:00
健美猞猁
544914f34b gromacs: added version 4.5.5 (#12197) 2019-07-30 16:07:07 +02:00
Ben Bergen
73a9d6556e New package: cgdb (#12154) 2019-07-29 17:19:53 -07:00
Hans Pabst
6db873532c LIBXSMM package: add version 1.13 and optional shared libs (#11998) 
* Add +shared variant, which builds shared library in addition to the
  static library.
* Install libraries even when specifying the header-only option
  (header-only is just about installing an additional folder).
* An additional make call is not required to build generator
  executables (they are built by default).
* Streamlined help-line of each variant.
 2019-07-29 17:14:41 -07:00
Toyohisa Kameyama
5f716b7ffa hpgmp package: Don't add cpu=native on ARM when using gcc 5.x or before (#12034) 2019-07-29 16:53:59 -07:00
Adam J. Stewart
b8b2fa226e CMOR package: add version 3.4.0 (Python3-compatible) (#12076) 2019-07-29 16:12:37 -07:00
Nick Forrington
6e9f51d1d2 Quantum Espresso package: Specify F90 compiler (#12119) 2019-07-29 15:53:39 -07:00
Adam J. Stewart
c9e5de85fd SimulationIO package: add version 9.0.1 (#12079) 2019-07-29 15:40:57 -07:00
Chuck Atkins
f18c9e0ba5 catalyst package: Fix paths used for intermediate code generation (#12082) 
Fixes #12065
 2019-07-29 15:31:07 -07:00
Adam J. Stewart
f88636b090 PISM package: add version 1.1.4 (#12083) 2019-07-29 15:26:03 -07:00
Adam J. Stewart
23420a6524 Typo fixes in Environments Tutorial (#12107) 2019-07-29 17:13:56 -05:00
Adam J. Stewart
9af155f0f6 Fix some Mac constraint checks (#12138) 
* Fix Mac platform check for dependency in py-ipython package: 'when'
  constraints in Spack directives must be Specs (either a Spec
  object or a Spec in string format)
* Fix Mac version check in py-numpy: platform.mac_ver() returns a
  3-part string as its first tuple item so the check as written would
  never pass; use Spack Version object to simplify check.
* Fix Mac version check in qt package (the check was incorrectly
  comparing ints and strings) and use Spack version object to
  simplify check.
 2019-07-29 15:05:02 -07:00
Glenn P Johnson
e7d9a6f426 Add conflicts statement for Python-3.6.7+ and Intel compiler 
Python-3.6.7 and up do not build with the Intel compiler

- https://bugs.python.org/issue35473
- https://bugs.python.org/issue37415
 2019-07-29 14:38:05 -07:00
Federico Ficarelli
dbd294c204 zeromq package: choose URL based on version; add versions (#12149) 
* Add versions 4.3.0, 4.3.1, and 4.3.2
* The URL format changed after 4.1.4, so this adds a url_for_version
  function to choose the URL format based on the version
 2019-07-29 14:36:33 -07:00
Hironori-Yamaji
43dd6b3418 Gromacs package: add openmp, mdrun_only, double_precision options (#12150) 2019-07-29 14:29:04 -07:00
Adam J. Stewart
c3dc63ce8f New package: py-pytest-isort (#12160) 2019-07-29 14:02:06 -07:00
Jon Rood
3e02dc258b LLVM package: add optional libomp_tsan support (#11793) 
This is only available for LLVM version 6 or greater. So this also
adds a conflict statement for earlier versions of LLVM.
 2019-07-29 12:23:15 -07:00
Owen Solberg
ee1c36a2b0 update cmake 3.15.1 checksum (#12182) 2019-07-29 15:13:52 -04:00
Adam J. Stewart
0d0a02b230 OpenGL package: always provides gl (#12158) 
With this PR, a user can designate older versions of OpenGL as an
external Spack package, and dependents can use that installation
as long as they do not have version requirements.

MacOS currently comes with OpenGL 2.1; there is currently no
'provides' directive in the OpenGL Spack package which specifies a
gl version provided for versions earlier than OpenGL 3.3, so earlier
versions of OpenGL are not considered to provide any version of gl.
This PR records that any version of OpenGL provides 'gl' (which is
sufficient for any package that does not require a specific version
of gl).
 2019-07-29 12:11:53 -07:00
Greg Becker
f78fc30032 intel: Add mpicc wrapper bindir to dependent env (#12132) 2019-07-29 12:04:15 -07:00