Commit graph

30204 commits

Author SHA1 Message Date
Harmen Stoppels
beb3414b4d
py-pygments 2.12; fix py-docutils, again (#35394)
* py-pygments 2.12; fix py-docutils, again

`2.12` is the latest for which our style hack works, beyond that we need
our own package to make a plugin.

Old docutils needs old setuptools

* py-setuptools is always a dep

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update the range

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-01 15:53:41 -08:00
Alex Richert
ed07cee852
Add capitalized symlinks for libesmf.{a,so} (#35774)
* Add capitalized symlinks for libesmf.{a,so}
* Add import of lib suffixes
2023-03-01 15:28:46 -08:00
Rémi Lacroix
7c1a164219
GitHub CLI: Add version 2.23.0 (#35761) 2023-03-01 13:59:28 -08:00
Howard Pritchard
18e0b893f2
papi: more fixes for Intel OneAPI compiler (#34048)
The Intel OneAPI's extreme pickiness continues to bring out
buggy/noncompliant code.

This patch fixes an error in the configure.in embedded 'c' test code
and also in a file with an initialized, but unused, variable.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2023-03-01 13:33:55 -08:00
Garth N. Wells
df5b25764b
Update FEniCSx libraries to v0.6 (#35600)
* Updates to release 0.6.

* Dep updates

* Dep version fix

* Another version fix

* Fix typo

* UFL version fix

* Update var/spack/repos/builtin/packages/py-fenics-dolfinx/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-fenics-ffcx/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Some updates following review

* Update var/spack/repos/builtin/packages/py-fenics-dolfinx/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* More updates

* More updates

* build/run updates

* Small fix

* Fix version number.

* specify lower bounds for python dependencies

* address style issues

* address style issues

* address PR comments

* amend setuptools dependency to be of type build only

* amend setuptools dependency to be of type run and build for ffcx and ufl

* add build dependency to ensure import tests pass

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Matthew Archer <ma595@cam.ac.uk>
2023-03-01 13:18:23 -08:00
Tiziano Müller
44705b0a6e
cp2k: fix builds on macOS, workaround reported issue with __contains__ (#35584)
Co-authored-by: Robert Cohn <rscohn2@gmail.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-03-01 12:01:00 -08:00
Erik Heeren
3bb03ea7d1
py-dbf: new versions and dependency (#35760) 2023-03-01 10:49:27 -08:00
luker
3c411bf135
Fix superlu-dist package for cray fortran (#35728)
The superlu-dist code developers modified the code such that the patch
is no longer needer for `@7.2.0:`  (the patch will actually fail)
2023-03-01 10:49:06 -08:00
Erik Heeren
f2363c1cb5
Py dask mpi (#35679)
* py-dask-mpi: new package with dependencies

* py-hatch-jupyter-builder is not needed after all

* skip_modules seems cleaner

* Update var/spack/repos/builtin/packages/py-jupyter-server-proxy/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-simpervisor/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-01 11:35:55 -06:00
Adam J. Stewart
7188eeb604
py-fiona: add upper bounds to Python versions (#35658)
* py-fiona: add upper bounds to Python versions

* Add error msg
2023-03-01 09:53:20 -06:00
Adam J. Stewart
583d89e95a
Simplify spack help --spec output (#35626) 2023-03-01 16:26:59 +01:00
Mosè Giordano
4a24401ed0
wrf: Fix compilation with GCC 10+ (#35177)
Flags `-fallow-argument-mismatch -fallow-invalid-boz` set in `FFLAGS`/`FCFLAGS`
environment variables don't really have effect in older versions of WRF, we need
to force them in the compiler wrappers.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-03-01 07:14:42 -08:00
Wouter Deconinck
2796794b19
py-particle: new versions 0.16.*, 0.20.*, 0.21.* (#35547)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-01 14:49:37 +01:00
Wouter Deconinck
dd854e86d9
sartre: new package (#32713) 2023-03-01 14:36:16 +01:00
Valentin Volkl
1500246ab7
vc: improvements for testing (#28887) 2023-03-01 14:29:43 +01:00
MatthewLieber
206cd94c0b
mvapich2-gdr/mvapich2x: add v2.3.7, update package config (#33066)
Co-authored-by: Nick Contini <contini.26@osu.edu>
2023-03-01 14:24:34 +01:00
Houjun Tang
ff1a425c8d
hdf5-vol-async: add v1.5 (#35636) 2023-03-01 14:16:56 +01:00
Wouter Deconinck
ab999d5af9
dd4hep: depends_on root +webgui when +ddeve ^root @6.28: (#35624) 2023-03-01 14:13:50 +01:00
H. Joe Lee
513ff34e66
dpdk: add a new build system and version (#35647) 2023-03-01 14:08:41 +01:00
H. Joe Lee
b59c8e9a43
isa-l_crypto: add a new package (#35651) 2023-03-01 14:06:37 +01:00
H. Joe Lee
9483e34d15
isa-l: add a new package (#35650) 2023-03-01 14:06:22 +01:00
Alex Richert
7e02139cad
upp: add v10.0.8 (#35667) 2023-03-01 14:00:27 +01:00
Alex Richert
a08d86c201
grib-util: fix dependency constraints (#35668) 2023-03-01 13:59:45 +01:00
Hans Fangohr
4e70532cd1
OOMMF: set preferred version (#35675)
With the last merge request for OOMMF [1], the intention was to have version
20b0_20220930 as the preferred version, and provide 20b0_20220930-vanilla as an
additional version for the unlikely case anybody needed that.

I made the (wrong) assumption that the `version` listed first in the `package.py` file
would be the preferred version. This merge request is to correct that by
explicitly tagging the preferred version with `preferred=True`.

[1] https://github.com/spack/spack/pull/33072/files
2023-03-01 13:53:59 +01:00
Glenn Johnson
2d2a1c82d4
docbook: resolve conflict in spack env view (#35682)
If the docbook packages
- docbook-xml
- docbook-xsl

are installed in a spack environment view the catalog files will be in
conflict in the view directory. This PR resolves that by adding an
appropriate prefix to each catalog name so that they are unique in the
view. The resulting XML_CATALOG_FILES environment variable will then be
able to point to both of them.
2023-03-01 04:17:46 -08:00
Wouter Deconinck
a47ebe5784
dd4hep: new versions 1.25, 1.25.1 (#35665) 2023-03-01 12:56:03 +01:00
acastanedam
4f97bb118f
elk: add v8.3.22 and fix a few issues (#35678) 2023-03-01 12:55:02 +01:00
Harmen Stoppels
d71eca74a3
mbedtls: new versions and deprecations [CVE-2022-46392] (#35715)
* Add new versions and deprecations [CVE-2022-46392]
* remove maintainer, order versions by major no
2023-03-01 03:14:00 -08:00
Tamara Dahlgren
f88dec43df
cbench: renamed test_blas_linkage to check_blas_linkage (#35690) 2023-03-01 12:03:23 +01:00
Wouter Deconinck
2e8306d324
py-uproot: new versions 4.3.*, 5.0.* (#35548) 2023-03-01 11:53:38 +01:00
Adam J. Stewart
d64d77e99e
py-torchmetrics: add v0.11.2-3 (#35755) 2023-03-01 02:48:35 -08:00
Cyrus Harrison
d7b11af731
ascent: add v0.9.0 (#35211) 2023-03-01 11:48:15 +01:00
Annop Wongwathanarat
68372a4dfe
hpcg: add arm compiler (#35710) 2023-03-01 11:46:12 +01:00
Bill Williams
54500a5fca
scorep: more precise dependencies for v7/v8 (#35712) 2023-03-01 11:45:07 +01:00
Adam J. Stewart
146464e063
Docs: fix link to PythonPackage docs (#35725) 2023-03-01 11:14:05 +01:00
Massimiliano Culpo
07e251c887
Remove handling of deprecated target names (graviton) (#35537)
* Update target names for Gitlab pipelines

* Remove handling of deprecated names for graviton
2023-03-01 11:03:12 +01:00
Mosè Giordano
f9f51cb930
Add new versions of Julia dependencies (#35622) 2023-03-01 01:52:28 -08:00
nicolas le goff
ad3c22fae9
gts: add missing pkgconfig dependency (#35657) 2023-03-01 10:49:09 +01:00
AMD Toolchain Support
bedcc5449a
quantum-espresso: fix building with aocc (#35612)
Co-authored-by: Tooley, Phil <phil.tooley@amd.com>
2023-03-01 10:47:42 +01:00
Henning Glawe
a1a54fa8b7
nfft: add v3.2.4 (#35757) 2023-03-01 01:42:23 -08:00
Edward Hartnett
2a97bcbd5a
bacio: add v2.6.0, including handling of shared library builds (#35490) 2023-03-01 10:29:12 +01:00
Mark W. Krentel
99fb4c4a47
hpctoolkit: add version 2023.03.01, add python variant (#35662)
1. add version 2023.03.01
 2. add variant 'python' that supports unwinding python source
 3. clean up some things with the cray variant
 4. require the latest libmonitor
 5. fix sha256 checksum for url patch
 6. delete rocm 5.3 from older versions
2023-03-01 09:44:32 +01:00
Brian Vanderwende
5b52685216
NCO: add v5.1.4 and v5.1.0 (#35753) 2023-03-01 09:27:25 +01:00
Alex Richert
53a924c20f
Fix bufr package typo (libufr->libbufr) (#35740) 2023-02-28 15:56:30 -08:00
Annop Wongwathanarat
09ad541e98
armcomputelibrary: add version 23.02 (#35723) 2023-02-28 23:51:05 +01:00
M. Eric Irrgang
b109e16fba
Back-port a patch for filesystem logic in gmx executable. (#35672)
* Backport a patch for relocatable `gmx` executable.

* spack style fixes
2023-02-28 14:18:00 -07:00
Mark W. Krentel
043a80ff9e
hpcviewer: add version 2023.02 (#35648) 2023-02-28 11:13:30 -08:00
Matthieu Dorier
b7f7af1713
c-raft: add new package (#35735)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-02-28 11:16:02 -07:00
Rémi Lacroix
e5bd319c19
git-lfs: Add version 3.3.0 (#35671) 2023-02-27 23:58:56 -05:00
Tim Haines
90ad65a6e7
Dyninst: add version 12.3.0 (#35630) 2023-02-27 16:13:47 -08:00