snehring
cd2893640d
interproscan: add version 5.61-93.0, fix build issue ( #37009 )
2023-04-21 14:05:23 +02:00
Glenn Johnson
b686974160
augustus: add version 3.5.0 ( #37037 )
...
Adjust dependencies and constraints.
2023-04-21 12:01:00 +02:00
Eric Brugger
3303dcbfbd
VisIt: add v3.3.3. ( #37034 )
2023-04-21 11:59:20 +02:00
Glenn Johnson
950079845c
zziplib: support multiple build systems ( #37058 )
...
This PR rewrites the zziplib recipe to use Spack's multiple build system
support.
2023-04-21 11:58:00 +02:00
Brian Vanderwende
57b56499b2
Add flag handler for mpi-serial ( #37060 )
2023-04-21 11:55:30 +02:00
Glenn Johnson
00715a66a1
arpack-ng: add version 3.9.0 ( #37032 )
2023-04-21 11:43:33 +02:00
dependabot[bot]
581bd6bb9a
build(deps): bump codecov/codecov-action from 3.1.2 to 3.1.3 ( #37077 )
...
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action ) from 3.1.2 to 3.1.3.
- [Release notes](https://github.com/codecov/codecov-action/releases )
- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md )
- [Commits](40a12dcee2...894ff025c7
2023-04-21 11:41:06 +02:00
dependabot[bot]
056eb659bb
build(deps): bump actions/setup-python from 4.5.0 to 4.6.0 ( #37078 )
...
Bumps [actions/setup-python](https://github.com/actions/setup-python ) from 4.5.0 to 4.6.0.
- [Release notes](https://github.com/actions/setup-python/releases )
- [Commits](d27e3f3d7c...57ded4d7d5
2023-04-21 11:40:37 +02:00
Thomas Madlener
6476b2d79c
edm4hep: add v0.8 ( #37006 )
2023-04-21 11:31:42 +02:00
Ashwin Kumar Karnad
a2078d709b
octopus: add v12.2 ( #35487 )
2023-04-21 11:30:30 +02:00
Ashwin Kumar Karnad
c8ad4807c2
octopus: fix download links ( #37081 )
2023-04-21 05:22:34 -04:00
Harmen Stoppels
7cf53a647e
readline: fix for nvhpc ( #37024 )
2023-04-21 11:02:55 +02:00
Massimiliano Culpo
cac44b9e15
Update archspec to latest release ( #37070 )
...
Fix -mcpu flags for gcc on neoverse-v1
Add support for NVHPC flags
2023-04-21 11:01:37 +02:00
Wouter Deconinck
354d59500b
glib: new versions 2.76.1, 2.74.7 ( #36361 )
...
* glib: new version 2.76.1
This adds a new stable version of glib, 2.76.1 (skipping the 2.75 unstable series).
`mkenums.py` check now is specified as a dict, after r62dca6c1cfe71ecc8771
2023-04-21 10:25:55 +02:00
Paul R. C. Kent
a639b22c7c
add-llvm-1601-1602 ( #37026 )
2023-04-20 19:56:52 -07:00
Wouter Deconinck
4f13e2fa15
py-ocnn: new package (octree-based sparse CNN) ( #37030 )
...
O-CNN is an octree-based sparse convolutional neural network framework for 3D deep learning. It is built on py-torch.
2023-04-20 21:43:47 -05:00
Bernhard Kaindl
e3109a96d4
bcache: Simplify check if -lintl shall be added to LDFLAGS ( #36569 )
...
Replace my initial libintl check with the much nicer check for
"intl" in self.spec["gettext"].libs.names. Thanks to Chris Green!
Co-authored-by: Bernhard Kaindl <bkaindl@gmail.com>
2023-04-20 18:56:49 -07:00
Pariksheet Nanda
0b606b01dc
uqtk: bump ( #36670 )
...
1. support version 3.1.3, which now depends on sundials@6
2. support version 3.1.2:, which broke the two patch files and
therefore the two patch files have been replaced by more flexible
filter_file() commands inside a patch() function.
3. rename the variant for python extension from using the package name
"+pyuqtk" to the more standard "+python"
4. add maintainers @omsai and the upstream developer @bjdebus who
offered to help with the spack packaging.
5. swig should only be a build-time dependency. swig is only
necessary until @:3.1.0
6. confirmed python dependencies are correct by inspecting imports,
subset python dependencies type to build, run, and confirmed all
31 build-time tests pass including the 9 python tests:
```console
$ spack env create uqtk-dev
$ spack add uqtk@3.1.3
$ spack install --test root && cat $(spack location -i uqtk)/.spack/install-time-test-log.txt
==> Testing package uqtk-3.1.3-nok6fut
==> [2023-04-19-14:56:25.005361] Running build-time tests
==> [2023-04-19-14:56:25.005536] RUN-TESTS: build-time tests [check]
==> [2023-04-19-14:56:25.009543] '/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/gmake-4.4.1-b6g4apmfvxz3bn4eabh37dehcrg65fj7/bin/make' '-j4' '-n' 'test'
==> [2023-04-19-14:56:25.014903] '/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/gmake-4.4.1-b6g4apmfvxz3bn4eabh37dehcrg65fj7/bin/make' '-j4' 'test'
Running tests...
/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/cmake-3.26.3-zjmsfz23j5l4ytniz26uzvxonlu5qebr/bin/ctest --force-new-ctest-process
Test project /tmp/omsai/spack-stage/spack-stage-uqtk-3.1.3-nok6fut47h42cnaau7wkoohgqy5f2qqa/spack-build-nok6fut
Start 1: ArrayReadAndWrite
Start 2: ArrayDelColumn
Start 3: Array1DMiscTest
Start 4: Array2DMiscTest
1/31 Test #1 : ArrayReadAndWrite ................ Passed 0.01 sec
Start 5: ArraySortTest
2/31 Test #2 : ArrayDelColumn ................... Passed 0.01 sec
Start 6: MultiIndexTest
3/31 Test #3 : Array1DMiscTest .................. Passed 0.01 sec
Start 7: CorrTest
4/31 Test #4 : Array2DMiscTest .................. Passed 0.01 sec
Start 8: QuadLUTest
5/31 Test #5 : ArraySortTest .................... Passed 0.02 sec
Start 9: MCMC2dTest
6/31 Test #6 : MultiIndexTest ................... Passed 0.01 sec
Start 10: MCMCRandomTest
7/31 Test #8 : QuadLUTest ....................... Passed 0.02 sec
Start 11: MCMCNestedTest
8/31 Test #10 : MCMCRandomTest ................... Passed 0.02 sec
Start 12: Deriv1dTest
9/31 Test #12 : Deriv1dTest ...................... Passed 0.01 sec
Start 13: SecondDeriv1dTest
10/31 Test #13 : SecondDeriv1dTest ................ Passed 0.01 sec
Start 14: GradHessianTest
11/31 Test #11 : MCMCNestedTest ................... Passed 0.03 sec
Start 15: GradientPCETest
12/31 Test #14 : GradHessianTest .................. Passed 0.01 sec
Start 16: PCE1dTest
13/31 Test #15 : GradientPCETest .................. Passed 0.01 sec
Start 17: PCEImplTest
14/31 Test #16 : PCE1dTest ........................ Passed 0.01 sec
Start 18: PCELogTest
15/31 Test #18 : PCELogTest ....................... Passed 0.01 sec
Start 19: Hessian2dTest
16/31 Test #19 : Hessian2dTest .................... Passed 0.01 sec
Start 20: BCS1dTest
17/31 Test #20 : BCS1dTest ........................ Passed 0.01 sec
Start 21: BCS2dTest
18/31 Test #21 : BCS2dTest ........................ Passed 0.01 sec
Start 22: LowRankRegrTest
19/31 Test #22 : LowRankRegrTest .................. Passed 0.01 sec
Start 23: PyModTest
20/31 Test #17 : PCEImplTest ...................... Passed 0.07 sec
Start 24: PyArrayTest
21/31 Test #23 : PyModTest ........................ Passed 0.08 sec
Start 25: PyArrayTest2
22/31 Test #25 : PyArrayTest2 ..................... Passed 0.30 sec
Start 26: PyQuadTest
23/31 Test #24 : PyArrayTest ...................... Passed 1.44 sec
Start 27: PyBCSTest1D
24/31 Test #26 : PyQuadTest ....................... Passed 1.68 sec
Start 28: PyBCSTest2D
25/31 Test #27 : PyBCSTest1D ...................... Passed 1.66 sec
Start 29: PyBADPTest
26/31 Test #7 : CorrTest ......................... Passed 3.43 sec
Start 30: PyRegressionTest
27/31 Test #28 : PyBCSTest2D ...................... Passed 1.50 sec
Start 31: PyGalerkinTest
28/31 Test #9 : MCMC2dTest ....................... Passed 3.90 sec
29/31 Test #29 : PyBADPTest ....................... Passed 1.66 sec
30/31 Test #30 : PyRegressionTest ................. Passed 1.72 sec
31/31 Test #31 : PyGalerkinTest ................... Passed 1.63 sec
100% tests passed, 0 tests failed out of 31
Total Test time (real) = 5.35 sec
==> [2023-04-19-14:56:30.382797] '/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/gmake-4.4.1-b6g4apmfvxz3bn4eabh37dehcrg65fj7/bin/make' '-j4' '-n' 'check'
==> [2023-04-19-14:56:30.385983] Target 'check' not found in Makefile
```
2023-04-20 18:53:39 -07:00
afzpatel
134b954c7f
enabling test for rccl hsakmt-roct and rocm-opencl ( #35465 )
...
* initial commit for enabling test for rccl hsakmt-roct and rocm-opencl
* fix styling and cleaning code
* adding missing imports and minor fixes
* minor style fix
* moidfying hsakmt-roct test to run right after installation
2023-04-20 18:39:49 -07:00
Daniel Ahlin
bf970ebf9d
nccl-fastsocket: initial packaging for nccl-fastsocket ( #36557 )
...
* nccl-fastsocket: Add NCCL transport plugin for GCP
* nccl-fastsocket: remove auto-gen. header and fix maintainers
* Update var/spack/repos/builtin/packages/nccl-fastsocket/package.py
* nccl-fastsocket: Add rationale for setting LD_LIBRARY_PATH
---------
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-04-20 21:38:40 -04:00
MatthewLieber
af47b9170c
osu-micro-benchmarks: adding sha for 7.1 release ( #36702 )
...
* adding sha for 7.1 release
* add a new version
---------
Co-authored-by: Matt Lieber <lieber.31@osu.edu>
2023-04-20 18:33:58 -07:00
Ashwin Kumar Karnad
bf04551bf5
Fix bigdft-suite compilation ( #36612 )
...
(from d20f284100
2023-04-20 18:18:11 -07:00
Wouter Deconinck
a419ffcf50
osg-ca-certs: igtf link should point to version, not 'current' ( #35977 )
...
* osg-ca-certs: igtf link should point to version, not 'current'
* osg-ca-certs: new version 1.110.igtf.1.119
* [@spackbot] updating style on behalf of wdconinc
---------
Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-04-20 18:09:27 -07:00
Cory Bloor
de7c82f13f
hiprand: split into new package ( #36798 )
2023-04-20 17:48:54 -07:00
Adam J. Stewart
37fb2c8dce
py-kornia: add v0.6.12 ( #37074 )
2023-04-20 20:48:35 -04:00
Alec Scott
329fa0f067
libxaw3d: add v1.6.4 ( #36854 )
2023-04-20 17:35:32 -07:00
snehring
9d97ed1190
bamutil: fix filter_file invocation ( #36978 )
2023-04-20 17:25:51 -07:00
snehring
794fc47722
gmap-gsnap: adding new version 2023-03-24 ( #36983 )
2023-04-20 17:12:30 -07:00
Erik Schnetter
5842e17085
netlib-lapack: New version 3.11.0 ( #36984 )
2023-04-20 17:10:47 -07:00
Annop Wongwathanarat
5ef7e90462
lammps: add linking with acfl for FFT ( #37000 )
2023-04-20 16:48:24 -07:00
Adam J. Stewart
05215e016b
ML CI: fix mirror name ( #37007 )
2023-04-20 16:45:15 -07:00
Pieter Ghysels
1ddde85221
Upgrade to STRUMPACK v7.1.0, update minimum CMake version ( #37014 )
...
* Upgrade to STRUMPACK v7.1.0, update minimum CMake version
* Update to v7.1.1, which has a fix for ROCm
2023-04-20 16:42:36 -07:00
Glenn Johnson
da8be02e66
ants: add version 2.4.3 ( #37031 )
...
* ants: add version 2.4.3
- add version 2.4.3
- deprecate old git version
* [@spackbot] updating style on behalf of glennpj
---------
Co-authored-by: glennpj <glennpj@users.noreply.github.com>
2023-04-20 16:31:27 -07:00
Rémi Lacroix
c348776096
Add new package MozJPEG ( #37052 )
...
* Add new package MozJPEG
MozJPEG is a patched version of libjpeg-turbo which improves JPEG compression efficiency achieving higher visual quality and smaller file sizes at the same time.
* MozJPEG: Add myself as a maintainer and fix style
2023-04-20 19:28:07 -04:00
Glenn Johnson
683b933f68
atompaw: add version 4.2.0.2 ( #37035 )
2023-04-20 16:07:33 -07:00
Alec Scott
5c5f3c00a3
emacs: default to +tls true ( #37038 )
...
* emacs: default to +tls true
* Add myself as a maintainer for emacs pkg
2023-04-20 15:53:11 -07:00
AMD Toolchain Support
d5c549f1e6
stream optimization for aocc ( #37039 )
2023-04-20 15:45:17 -07:00
Olivier Cessenat
8fb38e3982
poppler-data: new version 0.4.12 ( #37042 )
2023-04-20 15:35:51 -07:00
Olivier Cessenat
61ce48c2ac
poppler: new version 23.04.0 ( #37043 )
2023-04-20 15:34:40 -07:00
Olivier Cessenat
af19e51966
gxsview: new version 2022.11.04 ( #37050 )
2023-04-20 15:32:02 -07:00
Olivier Cessenat
04aaaa8270
netpbm: new version 10.73.43 ( #37051 )
2023-04-20 15:31:03 -07:00
Adam J. Stewart
f174bca689
py-lightly: add v1.4.2 ( #37053 )
...
* py-lightly: add v1.4.2
* pytorch and lightning 2.0 now supported
2023-04-20 15:29:53 -07:00
Cameron Book
7c9359d57e
Add scotch-7.0.3 checksum. ( #37054 )
2023-04-20 15:26:50 -07:00
Kelly (KT) Thompson
09100ac5d9
Provide version 1.16 of lcov; volunteer to be maintainer. ( #37056 )
2023-04-20 13:51:39 -07:00
Emil Briggs
2b2c84aa8a
rmgdft: new version 5.2.0 ( #37059 )
...
* Update for v5.0.4 release.
* Updated for version 5.0.5.
* Updated for new release.
2023-04-20 13:38:31 -07:00
snehring
a513272665
prism: adding new version 4.7 and java version restriction ( #37061 )
2023-04-20 13:36:01 -07:00
Matthew Thompson
843c0c060b
gftl: add version 1.9.0, 1.10.0 ( #37062 )
2023-04-20 13:32:10 -07:00
Matthew Thompson
772772f14d
gftl-shared: add version 1.6.0 ( #37063 )
2023-04-20 13:25:54 -07:00
Erik Schnetter
be133cd3d6
mpitrampoline: New version 5.3.0 ( #37065 )
2023-04-20 13:23:30 -07:00
Matthew Thompson
0ffedf2eba
fargparse: add version 1.5.0 ( #37066 )
2023-04-20 13:22:08 -07:00
