Commit graph

8291 commits

Author SHA1 Message Date
Michael Kuhn
d3be42fcca mpich: Add 3.3.1 (#11976) 2019-07-10 20:41:23 -05:00
Michael Kuhn
975b9a611a bzip2: Add 1.0.7 (#11975) 2019-07-10 18:37:16 -05:00
Reinhard
ea431be4b0 py-astropy: added latest version 3.2.1 (#11967)
- correctly installs under python@3.5:3.7.3
- (partially) fixes https://github.com/spack/spack/issues/11966
2019-07-09 21:19:38 -04:00
Carson Woods
2838aa772d package: Add powerapi package (#11845)
* Add powerapi package

* Fix flake8 formatting

* Fix download URL

* Update powerapi version line

* Fix how configure arguments are selected to improve readability

* Bug Fixes

* Fix trailing whitespace

* Bug fixes

* Remove incorrect configure flag
2019-07-09 09:57:53 -04:00
Milton Woods
d0b2c77cd1 Ferret: add version 7.2 and adjust dependencies (#11921)
* ferret: use libx11 from spack

* ferret: use mpi library with or without fortran support

* ferret: add version 7.2

* ferret: no need to specify ~mpi

* ferret: creating symlinks may fail for external packages; set include/lib paths instead
2019-07-09 09:33:07 -04:00
Toyohisa Kameyama
dab3026f2f diffsplice package: remove -m64 on ARM. (#11899) 2019-07-08 17:13:49 -07:00
Toyohisa Kameyama
a718d8af08 zoltan: use autotools for new architecture host (#11924)
* use autoreconf to regenerate configure script and config.guess for
  newer architectures
* Add perl build dependency for older versions. The required perl
  version is constrained because the perl script uses syntax that
  is deprecated in older versions
2019-07-08 16:57:17 -07:00
Hironori-Yamaji
68dd327d62 motif package: fix the download url (#11939) 2019-07-08 16:20:01 -07:00
Frédéric Simonis
1fe3d6367e preCICE package: add version 1.5.2 (#11949) 2019-07-08 13:59:08 -07:00
Xavier Delaruelle
a9067821b3 environment-modules package: add version 4.2.5 (#11953) 2019-07-08 13:58:38 -07:00
Justin S
36ee7ef456 New package: r-grbase (starting at 1.8-3.4) (#11937) 2019-07-08 12:01:58 -07:00
Justin S
897cd340d8 r-graph: update R constraint to reflect DESCRIPTION (#11934) 2019-07-08 12:01:17 -07:00
Justin S
60a827daff r-rbgl: add 1.60.0 (#11936) 2019-07-08 12:00:16 -07:00
Justin S
242bdef6e8 r-biocgenerics: add 0.30.0 (#11935) 2019-07-08 11:59:54 -07:00
Kevin Huck
f21073d231 tau: add conflicts for libelf/libdwarf variants (#11944)
Declare a conflict for TAU versions older than 2.28.1, that they
can't depend on libelf or libdwarf.  The user can still install it
by specifying tau@2.24~libelf~libdwarf.
2019-07-05 19:08:43 -07:00
Christoph Junghans
e392bf0412 cmake: add v3.14.5 2019-07-05 17:02:34 -07:00
Milton Woods
a7da5dcb19 py-stratify: vertical interpolation/stratification of atmos/ocean data (#11911)
* py-stratify: vertical interpolation/stratification of atmos/ocean data

* py-stratify: download from pypi.io
2019-07-04 10:38:48 -04:00
Milton Woods
d88c657f79 py-scikit-image: include more dependencies (#11912)
* py-scikit-image: include more dependencies

* py-scikit-image: limit some dependencies to recent versions
2019-07-04 10:38:02 -04:00
Hironori-Yamaji
cd18dadf92 jdk: Add JDK 12.0.1 (#11903) 2019-07-04 10:36:21 -04:00
Paul
1ce6490132 Added latest version, 0.7.1 (#11927) 2019-07-04 10:26:59 -04:00
Milton Woods
e7a3f703be py-antlr4-python3-runtime: new package (#11890)
* py-antlr4-python3-runtime: new package

* py-antlr4-python3-runtime: fix for flake8

* py-antlr4-python3-runtime: indent docstring

* py-antlr4-python3-runtime: clarify role of this package vs ANTLR in docstring

* py-antlr4-python3-runtime: remove whitespace at end of line
2019-07-04 10:12:54 -04:00
Glenn Johnson
54e87c8da0 Set ignore files for py-reportlab (#11928)
The py-reportlab package includes binaries for easy_install and pip.
That blocks activation if py-setuptools and/or py-pip are installed.
This PR block the binaries from py-reportlab as easy_install and pip
should be installed with their respective packages.
2019-07-03 19:15:01 -07:00
t-karatsu
adffb2bff4 libtool: execute autoreconf at ver.2.4.2 (#11913)
Version 2.4.6 did not require running autoreconf, so this only does
autoreconf for 2.4.2
2019-07-03 18:04:29 -07:00
shanedsnyder
902dcfd194 libfabric package: add version 1.8.0 (#11918) 2019-07-03 17:30:25 -07:00
Milton Woods
fae14bff21 py-cf-units: new package (#11891)
* py-cf-units: new package

* py-cf-units: download from pypi.io

* py-cf-units: include py-pytest-runner as build dep

* py-cf-units: remove empty build_args function

* py-cf-units: fix for flake8

* py-cf-units: indent docstring

* py-cf-units: remove excess spaces

* py-cf-units: list master branch ahead of numeric versions

* py-cf-units: remove extension keyword from version
2019-07-03 19:20:34 -04:00
Alberto Chiusole
f3bf89ebfe OpenMPI: add support for pbs/tm at configure. (#10620) 2019-07-03 14:07:51 -07:00
Justin M Wozniak
28949787e9 turbine: Better auto-detection of R location (#11711)
If R is provided by the system with a module (i.e. registered in
packages.yaml with a "module" entry) and has no discernible prefix,
this allows turbine to still make use of R.
2019-07-03 11:24:20 -07:00
Milton Woods
ea1df6a9b4 py-pyke: new package (#11894)
* py-pyke: automatic python program generator

* py-pyke: expand the package docstring
2019-07-02 15:58:14 -04:00
Milton Woods
48bfece55e py-pyugrid: unstructured grids in netcdf files (#11900) 2019-07-02 15:56:18 -04:00
ktsai7
229ba28ad5 Add llvm as deps when static analyzer is enabled (#11888)
* dep llvm if static analyzer
dep caliper if caliper

* fix typo

* adding variants for toggles
2019-07-02 11:45:13 -06:00
Toyohisa Kameyama
f1592e339d portcullis package: remove -m64 on aarch64. (#11905)
GCC on aarch64 dose not support -m64. This patch removes the -m64
flag if target is aarch64.
2019-07-02 10:42:06 -07:00
Phil Carns
2709f948fa opa-psm2 package: correct installation prefixes and add 11.2.77 (#11658)
This PR corrects a problem with the opa-psm2 package. It was
installing headers into <prefix>/usr/include and libraries into
<prefix>/usr/lib instead of <prefix>/include and <prefix>/lib.
The extra level of usr/ subdirectories causes dependent packages
like libfabric to fail to build.
2019-07-02 10:34:58 -07:00
Mark Olesen
5fd3b5acda openfoam: rename openfoam-com to openfoam (#11876)
The original packaging, with openfoam as a virtual and with
openfoam-com, openfoam-org and openfoam-extend as
providers, adds an obfuscation layer without any benefit.

- Rename `openfoam-com` to `openfoam`, and remove the 
  `openfoam` virtual package.
2019-07-01 22:54:36 -07:00
Todd Gamblin
515b4045e9 specs: remove parse_anonymous_spec(); use Spec() instead
- `parse_anonymous_spec()` is a vestige of the days when Spack didn't
  support nameless specs.  We don't need it anymore because now we can
  write Spec() for a spec that will match anything, and satisfies()
  semantics work properly for anonymous specs.

- Delete `parse_anonymous_spec()` and replace its uses with simple calls
  to the Spec() constructor.

- make then handling of when='...' specs in directives more consistent.

- clean up Spec.__contains__()

- refactor directives and tests slightly to accommodate the change.
2019-07-01 18:45:44 -07:00
Milton Woods
1ad9f6268b New packages: libmo-unpack and py-mo-pack (#11895)
* libmo-unpack: package to encode and decode UM fields
* py-mo-pack: python interface for libmo-unpack
2019-07-01 18:24:45 -07:00
Justin S
781a115656 New package: r-gwmodel (starting at 2.0-9) (#11887) 2019-07-01 18:14:29 -07:00
Justin S
196886e708 New package: r-spatialreg (starting at 1.1-3) (#11886) 2019-07-01 18:13:06 -07:00
Justin S
a7cd7fdcd4 New package: r-spdata (starting at version 0.3.0) (#11883) 2019-07-01 18:11:16 -07:00
Milton Woods
711a80832a New package: py-nc-time-axis (#11898) 2019-07-01 18:07:57 -07:00
Glenn Johnson
b66c296562 py-markdown package: update dependency version range (#11908)
The python dependency specifies that 2.7 or 2.8 are allowed when in
fact it should specify a version range (anything between 2.7 and 2.8,
inclusive).
2019-07-01 17:52:41 -07:00
Sameer Shende
4d0926464c mpich: wrapperrpath variant allows disablement of RPATH usage in mpicc
Added a wrapperrpath variant to mpich that defaults to `True`.

Users can set this to `False` (e.g., spack install mpich~wrapperrpath) to
disable the wrapper RPATHs.  This makes it easier to replacing an MPICH
installation in a container with an MPICH for the host system,
e.g., Cray MPICH with Shifter on Cori, Intel MPI, MVAPICH2, etc.

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2019-07-01 15:09:40 -07:00
Toyohisa Kameyama
54de03548b planck-likelihood: remove -m64 on ARM (#11902) 2019-07-01 10:48:45 -07:00
Axel Huebl
1b3c11e793 ADIOS2: v2.4.0 (#11904)
Add the latest release of ADIOS2.
2019-07-01 13:47:31 -04:00
Milton Woods
6856972745 tk: avoid search for X headers and libraries (#11892) 2019-07-01 13:47:04 -04:00
t-karatsu
8ca5c3685a camellia: fix hdf5 dependency (#11810)
* camellia: fix hdf5 dependency

* camellia: Add comment
2019-07-01 13:40:53 -04:00
Justin S
b517be2c68 r-spacetime: new package at 1.2-2 (#11885) 2019-07-01 13:39:15 -04:00
Milton Woods
0f703b7e81 py-netcdf4: depend on hdf5+hl (#11893) 2019-07-01 15:38:35 +02:00
Dr Owain Kenway
441401bb8b llvm: don't build CppBackend for flang versions of llvm (#11841)
The version of LLVM used by flang is new enough that CppBackend doesn't exist.  Unfortunately, `flang-xxxxxxxx` is seen as < `3.9.0` by the version check.  

* add a special case for `flang` versions.
2019-06-30 17:04:29 -07:00
Oliver Breitwieser
cf76a143a2 libtomlc99: Update version
The PR for shared libraries has been merged upstream -> add new version.
2019-06-30 16:02:08 -07:00
Christoph Junghans
7f2e364fa1
legion: added recent releases (#11889) 2019-06-29 07:12:24 -06:00