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599 commits

Author SHA1 Message Date
David Beckingsale
19876161c7 Update ZSH version 2015-11-05 07:42:18 -08:00
Kelly T. Kirk
618a1c7119 Was getting system python over spack python 2015-11-05 08:01:00 -05:00
Todd Gamblin
1c4ef29962 Add Sphinx package 2015-11-04 17:55:43 -08:00
Todd Gamblin
f201bfb998 Modified bzip2 package to work properly on macs. 2015-11-04 17:43:22 -08:00
Paul Dapolito
16f0ece75b added zlib dependency to glib package specification 2015-11-01 19:55:14 -08:00
Todd Gamblin
58adff307f Merge pull request #142 from mathstuf/dbus-disable-systemd 
dbus: disable systemd
 2015-10-29 00:07:03 -07:00
Todd Gamblin
5d626ac561 Merge pull request #141 from epfl-scitas/packages/clang 
clang : updated versions + depends_on(python)
 2015-10-29 00:06:50 -07:00
Todd Gamblin
11c3a9f60d Merge pull request #143 from mathstuf/update-ncurses 
ncurses: update package
 2015-10-29 00:03:40 -07:00
Todd Gamblin
130d2d8de0 Merge pull request #144 from mathstuf/add-paraview 
paraview: add package
 2015-10-29 00:03:15 -07:00
Todd Gamblin
dab230845d Merge pull request #121 from epfl-scitas/issues/gcc 
GCC : added variant to packages for binutils, solve linking time error
 2015-10-28 23:29:33 -07:00
Ben Boeckel
ddbfc40303 paraview: add package 
A first attempt; builds successfully. Some dependencies have hard-coded
dependencies where they shouldn't (e.g., hdf5 -> mpi, libxml -> python),
but that's a different rabbit hole.
 2015-10-27 15:37:31 -04:00
Ben Boeckel
b88da83a12 dbus: disable systemd 
Not necessary in spack. Also forcefully installs outside of the prefix.
 2015-10-27 13:51:23 -04:00
Ben Boeckel
e8f5a85ffd ncurses: update package 2015-10-27 13:50:59 -04:00
Massimiliano Culpo
3913c10afb clang : updated versions and dependencies 
llvm : added dependency on 'python@2.7:' for better portability
 2015-10-27 08:04:55 +01:00
Massimiliano Culpo
8b22a4f4f8 llvm : updated versions 2015-10-27 08:04:20 +01:00
Paul Dapolito
cd2a23384f Added v5.2.2 for xz library 2015-10-26 14:28:56 -07:00
Massimiliano Culpo
e812c35689 GCC : removed binutils variant 2015-10-23 10:11:38 +02:00
Todd Gamblin
f76b3890ff Merge pull request #137 from davidbeckingsale/features/ompi-wrappers 
Filter wrapper data to use correct compilers in OpenMPI
 2015-10-22 16:01:55 -04:00
David Beckingsale
9f496e5efa Replace compiler in f90 and f77 wrappers if they exist 2015-10-22 09:50:02 -07:00
David Beckingsale
41c01b523f Filter wrapper data to use correct compilers in OpenMPI 2015-10-22 09:13:20 -07:00
Todd Gamblin
cbcc6fc9f5 Merge branch 'khuck-develop' into develop, github PR #136 2015-10-22 08:27:23 -07:00
Kevin Huck
7cb557cba7 Adding dependency on ompt-openmp, now that it is a package. 2015-10-22 08:06:31 -07:00
Kevin Huck
caf93cc408 Adding package for OMPT support in the LLVM/Clang OpenMP runtime, 
which gives OMPT support for applications built with GCC, Intel or
LLVM/Clang.
 2015-10-22 08:03:50 -07:00
Massimiliano Culpo
e6a44bd8ac GCC : removed dependency on libelf. Removed isl variant 2015-10-22 15:55:43 +02:00
Massimiliano Culpo
f475ec4ce6 Merge branch 'develop' of https://github.com/scalability-llnl/spack into issues/gcc 
Conflicts:
	var/spack/packages/gcc/package.py

GCC : removed dependency on libelf. Removed isl variant
 2015-10-22 15:53:44 +02:00
Kevin Huck
24838a62b4 Changed date formatting. 2015-10-22 06:02:56 -07:00
Kevin Huck
2a61ff0794 Changing git checkout from "master" to commit 
d2e66ddde689120472fc57fc546d8cd80aab745c
 2015-10-22 03:57:33 -07:00
Kevin Huck
fb9eca4226 Added an APEX package, but it is still using the git master instead 
of a release.
 2015-10-21 19:35:31 -07:00
Kevin Huck
c082abfb65 Modified the binutils package to use --enable-shared. Required by tools that 
use binutils and get this error (or equivalent):
"relocation R_X86_64_32S against `bfd_errmsgs' can not be used when
making a shared object; recompile with -fPIC"
 2015-10-21 18:32:57 -07:00
Todd Gamblin
1f662465c2 Merge pull request #119 from mamelara/develop 
Added current version 3.2 of libffi version 3.1 has a bug
 2015-10-21 16:07:26 -04:00
Todd Gamblin
c8f01480d6 Merge pull request #128 from mathstuf/netcdf-new-linker-mpi 
netcdf: link to MPI
 2015-10-21 16:02:59 -04:00
Todd Gamblin
c388cbe8e4 Merge pull request #131 from jsquyres/pr/openmpi-update 
openmpi: update package versions of Open MPI
 2015-10-21 15:59:12 -04:00
Todd Gamblin
6773a2b3bf Merge pull request #132 from jsquyres/pr/mpich-mpi-version-fix 
mpich: add fine-grained MPI conformance versions
 2015-10-21 15:58:41 -04:00
Todd Gamblin
59dfb1c175 Merge pull request #134 from davidbeckingsale/features/ncdu 
Added ncdu package
 2015-10-21 15:58:02 -04:00
Todd Gamblin
345fd3b285 Merge pull request #133 from epfl-scitas/packages/trilinos 
Packages/trilinos
 2015-10-21 15:54:13 -04:00
Kevin Huck
e0e79a2cb3 Adding package for activeharmony. 2015-10-21 11:56:01 -07:00
David Beckingsale
7e2f3cff44 Added ncdu package 2015-10-19 15:41:46 -07:00
Massimiliano Culpo
ec5560374c glm : added basic configuration for the package 2015-10-19 13:56:08 +02:00
Massimiliano Culpo
aab7102b9b matio : added basic configuration for the package 2015-10-19 13:55:44 +02:00
Massimiliano Culpo
3a4bdf1856 trilinos : first version that compiles on bellatrix 2015-10-19 13:48:46 +02:00
Massimiliano Culpo
ff0d039a1f trilinos : prototype for the whole package 2015-10-19 13:48:38 +02:00
Massimiliano Culpo
f4460894be hdf5 : updated version 
mpich : updated version
trilinos : created stub
 2015-10-19 13:48:24 +02:00
Todd Gamblin
44ba16a391 Add libiberty option to binutils 2015-10-17 17:04:34 -07:00
Jeff Squyres
67b94acd42 mpich: add fine-grained MPI conformance versions 
Similar to the Open MPI and MVAPICH packages.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2015-10-17 07:06:06 -04:00
Jeff Squyres
43f58d9f61 openmpi: update the MPI conformance for each Open MPI version 2015-10-16 15:27:22 -04:00
Jeff Squyres
f39e40664f openmpi: add v1.10.0 and update v1.8.2->v1.8.8 2015-10-16 15:26:58 -04:00
Ben Boeckel
9ec4ae83af netcdf: link to MPI 
Newer GNU linker refuses to use transitive linking; if netcdf calls
MPI_Allreduce, it must link the providing library directly.

Also switched to CMake because I don't know autoconf well enough to know
how to put MPI stuff into it.
 2015-10-15 09:20:16 -04:00
Gregory L. Lee
5dd39bfca5 bug fix for github issue 122 2015-10-08 08:12:30 -07:00
Todd Gamblin
5d64012868 Merge branch 'features/libxcb-1.11.1' into develop 2015-10-08 00:13:47 -07:00
Massimiliano Culpo
17de9a37f1 gcc : fixed spec file 2015-10-06 18:49:18 +02:00
Massimiliano Culpo
d44571257a spec file : everything is dumped, only link rule is modified 2015-10-06 18:49:04 +02:00
Massimiliano Culpo
f068d1ba57 GCC : added variants for libelf, binutils, isl. gcc@5.0: still has issues 2015-10-06 18:48:47 +02:00
Gregory L. Lee
6fcf16b710 added libxcb version 1.11.1 2015-10-05 12:59:26 -07:00
Mario Melara
75d30b08fb Added current version 3.2 of libffi version 3.1 has a bug that interferes with glib 2015-10-01 21:51:55 -07:00
Adam Moody
5563c66675 update scr to 1.1.8 2015-09-29 18:18:34 -07:00
Mario Melara
13eb461ec3 Adding bowtie2 package along with patch 2015-09-24 11:21:54 -07:00
Mario Melara
521632b3dc Added samtools bioinformatics software 2015-09-23 16:30:44 -07:00
Todd Gamblin
6d4eed3845 Merge pull request #102 from RasmusWL/features/fish 
Add fish (shell) package
 2015-09-23 01:37:59 -07:00
Todd Gamblin
82ea7aec51 Merge pull request #106 from justintoo/add-package-doxygen 
(Package) Add Doxygen (v1.8.10)
 2015-09-23 01:37:31 -07:00
Todd Gamblin
d474eeb424 Merge pull request #110 from scalability-llnl/features/boostupdate 
update boost package for new releases
 2015-09-23 00:32:22 -07:00
Todd Gamblin
5d6baacc56 Merge pull request #111 from scalability-llnl/features/protobuf 
add protobuf package
 2015-09-23 00:31:26 -07:00
Todd Gamblin
46cf0a23d9 Merge pull request #112 from scalability-llnl/features/glog 
add glog package
 2015-09-23 00:30:37 -07:00
Todd Gamblin
f02af701e5 Merge pull request #113 from scalability-llnl/features/gflags 
add gflags package
 2015-09-23 00:29:50 -07:00
Todd Gamblin
5f826a0ab7 Merge pull request #114 from scalability-llnl/features/snappy 
Features/snappy
 2015-09-23 00:27:27 -07:00
Adam Moody
84823ed828 add lmdb package 2015-09-22 12:17:01 -07:00
Adam Moody
3ade141829 add leveldb package 2015-09-22 11:59:09 -07:00
Adam Moody
30acc6f2f0 add snappy package 2015-09-21 16:45:59 -07:00
Adam Moody
22ba02b22b add gflags package 2015-09-21 16:40:23 -07:00
Adam Moody
b5d7cd55ce add glog package 2015-09-21 16:30:11 -07:00
Adam Moody
e4e22ed17e add protobuf package 2015-09-21 16:19:50 -07:00
Justin Too
3691201b4f (Package) Add Spot C++ library (v1.99.3) 2015-09-21 11:04:56 -07:00
Justin Too
99ca0f3153 (Package) Add Doxygen (v1.8.10) 2015-09-11 20:29:18 +00:00
Rasmus Wriedt Larsen
b06117f77a Add fish (shell) package 2015-09-03 14:19:27 -07:00
Adam Moody
ac088bae6a update boost 2015-09-01 16:02:14 -07:00
Todd Gamblin
6af49d41fd Add elfutils. 2015-08-27 00:10:53 -07:00
Todd Gamblin
13fd742610 Merge branch 'features/pidx' into develop 2015-08-26 23:48:52 -07:00
Todd Gamblin
babbc5bb45 Minor fix-ups for PIDX 2015-08-26 23:48:36 -07:00
Gregory L. Lee
2c3e7a6f87 added graphviz dependency and dysect variant to STAT 2015-08-25 11:48:12 -07:00
Gregory L. Lee
1c9c5a385d added graphviz and dependencies 2015-08-25 11:38:39 -07:00
Gregory L. Lee
689dbb8fb6 use filter_file instead of patch 2015-08-24 08:51:41 -07:00
Jim Galarowicz
24c609b6df Updates to the Krell related product packages. 2015-08-22 09:34:44 -05:00
Jim Galarowicz
fe9959d4da Merge remote-tracking branch 'upstream/develop' into develop 2015-08-18 08:05:25 -05:00
Peer-Timo Bremer
40b21d7cbe Initial version of PIDX package 2015-08-17 15:38:12 -07:00
Gregory L. Lee
bd1cd83d71 added lapack and blas deps, fixed gfortran compiler dependency 2015-08-17 11:54:14 -07:00
Gregory L. Lee
92ea86dc36 moved lapack package to netlib-lapack 2015-08-14 16:30:35 -07:00
Gregory L. Lee
ec47ab16ce updated blas and lapack packages 2015-08-14 16:27:51 -07:00
Todd Gamblin
c8f65c1530 Fix 2.6 incompatibility 2015-08-13 00:21:02 -07:00
Todd Gamblin
17c2a0d6f3 Merge pull request #92 from trws/flux-build 
pre-alpha flux build and requisite dependencies
 2015-08-13 00:02:49 -07:00
Todd Gamblin
58f848fa29 Merge pull request #94 from alfredo-gimenez/dev-pandas 
Fixed py-pandas package
 2015-08-13 00:00:35 -07:00
Todd Gamblin
f34b04e555 Merge pull request #87 from alfredo-gimenez/develop 
Added gui and cscope features to Vim package
 2015-08-12 23:58:27 -07:00
Alfredo Gimenez
d6bf9c9887 Cscope vim variant depends on cscope 2015-08-07 07:58:04 -07:00
Alfredo Gimenez
d017c5080a Fixed py-pandas package 2015-08-07 00:03:14 -07:00
Alfredo Gimenez
067ecb90b9 Added cscope (dependency for vim+cscope) 2015-08-06 09:28:28 -07:00
Tom Scogland
7182671f8f pre-alpha flux build and requisite dependencies 
NOTE: the ncurses package now installs *BOTH* versions, wide and non-wide
character for compatibility with packages that require either one.  It may be
desirable for this to be an option in the future.
 2015-08-03 11:59:52 -07:00
Mike Nolta
7ebb4fcedc add missing gmp dependency to mpfr package 2015-08-01 16:00:13 -04:00
Tom Scogland
016eef6a16 adding the bear compilation database generator 2015-07-29 14:21:03 -07:00
Alfredo Gimenez
00ab6eb616 Vim with added feature support, including gvim 2015-07-23 11:38:02 -07:00
Tom Scogland
6ad5210216 adding a zsh package 2015-07-22 11:35:51 -07:00
Jim Galarowicz
9fee7be695 Add the initial version of the OpenSpeedShop spack build file. OpenSpeedShop is an application performance analysis tool that runs on Linux and gathers a number of different types of performance data and displays that data in a command line tool (CLI) and via a graphical user interface (GUI). 2015-07-21 11:26:59 -05:00
Jim Galarowicz
e8235b10c6 Add the cbtf-lanl spack build package. cbtf-lanl is LANLs contribution to the CBTF project. It contains psTool and memTool which are example tools, showing use case examples for CBTF. 2015-07-21 11:23:23 -05:00
Jim Galarowicz
23971bae92 Add the cbtf-krell spack build package. cbtf-krell is the krell contribution to the CBTF project and includes services, messages, and core libraries and components that support performance information gathering, transfer, and reduction. 2015-07-21 11:20:27 -05:00
Jim Galarowicz
eff5016653 Add the cbtf spack build package. cbtf is the base package for the component based tool framework and is used for building and connecting cbtf components, including distributed components via the MRNet transfer mechanism. 2015-07-21 11:15:53 -05:00
Jim Galarowicz
a9c737f911 Add spack build package for Xerces-C which is a supporting package for the krell related projects. 2015-07-21 10:59:52 -05:00
Jim Galarowicz
f5093094eb Add the cbtf-argonavis project package file. cbtf-argonavis is a project based on CBTF that supports performance analysis of GPU applications. 2015-07-21 10:58:16 -05:00
Jim Galarowicz
15ec3cb3cd Add qt3 version support and a variant that controls patching the qt3 version for compile issues and answering yes to the license questions during build. 2015-07-21 10:51:53 -05:00
Jim Galarowicz
b4e0804b37 Add the latest version to the papi package. 2015-07-21 10:50:11 -05:00
Jim Galarowicz
64c8fd3fa1 Add krelloptions variant that is used to turn on a configuration option to build the thread safe lightweight libraries. 2015-07-21 10:49:15 -05:00
Jim Galarowicz
13421dc4aa Add patches that enable features added for krell related products. Update the package file to add a krellpatch variant to control adding the patches. 2015-07-21 10:20:05 -05:00
Jim Galarowicz
0591980cbe Add configuration change for krell related products, they expect the dyninst includes in include/dyninst. 2015-07-21 10:17:37 -05:00
Jim Galarowicz
d1f127d8ef Add changes for krell related products to binutils. Add a patch that installs libiberty_pic.a which krell products will favor/use. 2015-07-21 10:15:17 -05:00
Todd Gamblin
e097696390 Update concretize to check for more changes and iterate further. 2015-07-16 01:12:11 -07:00
Todd Gamblin
8828dbf2e8 Remove superfluous print in vim. 2015-07-14 23:48:07 -07:00
Todd Gamblin
2e90599283 Merge branch 'develop' of github.com:scalability-llnl/spack into develop 2015-07-14 23:43:59 -07:00
Todd Gamblin
6f8a4318c5 Remove python 2.6-incompatible format expression. 2015-07-13 18:25:18 +00:00
Tom Scogland
889485181e adding gnu global tags and exuberant ctags 2015-07-10 13:54:38 -07:00
Tom Scogland
fda208f6b8 adding YAPF (Yet Another Python Formatter) 2015-07-09 14:55:27 -07:00
Gregory L. Lee
2e37523428 for LaunchMON added latest git commit and dependences 2015-07-08 11:25:41 -07:00
Gregory L. Lee
ddfc276688 removed workaround 2015-07-02 15:14:30 -07:00
Florent Pruvost
e06d351f7a add cblas headers in install directory 2015-07-02 02:05:00 -07:00
Todd Gamblin
7625881cb3 Merge pull request #75 from alfredo-gimenez/develop 
Thanks!
 2015-07-02 01:27:47 -07:00
Todd Gamblin
6f94a2567b Add py-lockfile and py-python-daemon packages. 2015-07-02 00:40:25 -07:00
Alfredo Gimenez
25c1678004 Commented out old version 2015-06-23 17:39:23 -07:00
Alfredo Gimenez
9f27ddc256 New mpfr release invalidates previous download link (not sure where old version is...) 2015-06-23 17:36:57 -07:00
Todd Gamblin
a51d4afe3e Minor simplification (os.environ -> env) 2015-06-20 20:25:12 -07:00
Alfredo Gimenez
314ecc54fe Thrift python support 2015-06-18 17:29:16 -07:00
Alfredo Gimenez
f832719ceb Added silo 4.8 with HDF5 (for LULESH 2.0) 2015-06-18 12:31:01 -07:00
Alfredo Gimenez
0c028e24b4 Removed Lua dependency 2015-06-18 10:30:02 -07:00
Alfredo Gimenez
55e24548c3 Added Thrift (HBase management in C++) 2015-06-18 10:29:34 -07:00
Tom Scogland
912c29471a adding python pyelftools package 2015-06-17 15:19:46 -07:00
Todd Gamblin
607f263fbc Merge pull request #61 from alfredo-gimenez/develop 
Mitos 0.9.1
 2015-06-11 16:31:28 -07:00
Todd Gamblin
3cb10f92af Merge pull request #62 from trws/tmuxinator 
Partial ruby extension and tmuxinator package
 2015-06-11 16:31:15 -07:00
Todd Gamblin
9955df896b Merge pull request #63 from trws/silver-searcher 
adding package for the silver searcher
 2015-06-11 16:31:04 -07:00
Tom Scogland
a087fd71e4 Removing comment line 
Missed that the auto-generated comment line stuck around.
 2015-06-11 13:57:19 -07:00
Tom Scogland
d92ac2a6b2 Small ruby enhancement and tmuxinator package 
It is currently less painful to pull the source from github, compile it into a
gem, then install the gem, than it is to download a gem and install it.  This
still lacks an activation mechanism, but `spack use tmuxinator` is functional.
 2015-06-11 13:51:53 -07:00
Alfredo Gimenez
afe3c5b6bb Mitos 0.9.1 2015-06-11 11:02:51 -07:00
Tom Scogland
cd581d1d5a adding package for the silver searcher 2015-06-10 14:24:38 -07:00
Tom Scogland
2d465ffd10 partial upgrade to vim package 2015-06-10 14:14:31 -07:00
Todd Gamblin
04bcf43649 Merge pull request #58 from trws/python-cffi 
Python cffi
 2015-06-10 00:36:37 -07:00
Todd Gamblin
874326a1ad Merge pull request #56 from trws/uuid-task-and-taskd 
package files for libuuid, needed for flux and taskwarrior packages
 2015-06-10 00:35:30 -07:00
Tom Scogland
c8ad456fd6 nettle depends on gmp, without it the nettle build fails on gcc 4.9.2 2015-06-09 19:37:42 -07:00
Tom Scogland
8839eeb421 new package files for python-cffi and its dependency pycparser 2015-06-09 19:36:08 -07:00
Tom Scogland
eab3d4811e package files for libuuid, needed for flux and taskwarrior packages, along with the taskwarrior packages 2015-06-09 19:26:49 -07:00
Todd Gamblin
e64c0f4e4e Fix Boost finding in Dyninst 8.2.1. 2015-06-09 17:48:38 -07:00
Todd Gamblin
bde9c7eee3 Upate ATLAS and netlib-blas. 2015-06-07 15:41:15 -07:00
Todd Gamblin
0570660d81 Make blas a virtual dependency, default netlib-blas. 2015-06-06 18:23:12 -07:00
Todd Gamblin
26b9592780 Add disablement of cpu throttle check. 2015-06-06 18:19:05 -07:00
Todd Gamblin
8b9dcfe635 Delete lapack/atlas combined package. 2015-06-06 18:18:51 -07:00
Todd Gamblin
5d94864b6c Rename netlib_blas -> netlib-blas 2015-06-06 18:18:44 -07:00
Todd Gamblin
50d7b3df2b Merge branch 'psaravan-fastmath' into features/fastmath 
Conflicts:
	var/spack/packages/lapack/package.py
 2015-06-06 18:17:59 -07:00
Todd Gamblin
8215c85619 Merge branch 'develop' into features/fastmath 2015-06-06 18:15:52 -07:00
Todd Gamblin
c43b5d670b Remove dummy fastmath package. 2015-06-06 17:48:33 -07:00
Todd Gamblin
b6ad37557f fix up Saravan's petsc install 2015-06-06 17:41:15 -07:00
Todd Gamblin
d266bf0184 Working Hypre, PARPACK. 2015-06-06 17:21:11 -07:00
Todd Gamblin
5294e2b9b9 CGM package working on cab. 2015-06-06 16:56:59 -07:00
Todd Gamblin
c5ab3f4e82 CBLAS package working and patching in spack compilers. 2015-06-06 16:29:37 -07:00
Todd Gamblin
f29fc5822b Working boxlib package. 2015-06-06 16:16:19 -07:00
Todd Gamblin
b9746de52e Working ARPACK package. 2015-06-06 15:26:54 -07:00
Todd Gamblin
03780ea105 Remove autosave files from saravan's PR 2015-06-06 15:26:54 -07:00
Todd Gamblin
422a75e4b8 Clean up arpack build, use the Spack f77 compiler. 2015-06-06 15:26:54 -07:00
Saravan Pantham
1f0246f970 Updated HDF5 to use MPI. 2015-06-06 15:26:43 -07:00
Saravan Pantham
9d71093500 Updated Zoltan. 2015-06-06 15:26:42 -07:00
Saravan Pantham
fd34f4b119 Added more FASTMath packages. 2015-06-06 15:26:38 -07:00
Saravan Pantham
c174fe6199 Fixed BLAS and Lapack installations 2015-06-06 15:26:31 -07:00
Saravan Pantham
d461aa3722 Added Lapack package 2015-06-06 13:06:18 -07:00
Saravan Pantham
a23e1579e3 Added BLAS package 2015-06-06 13:06:17 -07:00
Todd Gamblin
ab31f989db Merge Alfredo's Mitos changes from github with Greg's Python changes. 2015-06-06 12:53:28 -07:00
Gregory L. Lee
96ec75f7fe Merge branch 'develop' of ssh://cz-stash.llnl.gov:7999/scale/spack into develop 2015-06-04 15:49:57 -07:00
Gregory L. Lee
5ac5c021b8 new package versions 2015-06-04 15:49:55 -07:00
Alfredo Gimenez
dae33a31c0 Dyninst 8.2.1+ dependency for cmake 2015-06-03 22:02:47 -07:00
Alfredo Gimenez
15aee0de1a Mitos updated with new release 2015-06-03 21:58:44 -07:00
Gregory L. Lee
c4f5a881e6 new Python extensions 2015-06-03 10:08:07 -07:00
Gregory L. Lee
6dffe2ddd1 updated url 2015-06-03 10:07:21 -07:00
Gregory L. Lee
74b0a9c059 updated Python extension versions 2015-06-01 08:39:01 -07:00
Gregory L. Lee
83af842a74 fixed cython activation conflict 2015-06-01 08:38:32 -07:00
Todd Gamblin
f813d823a1 Merge branch 'features/optional-deps' into develop 
This includes:
- Much better variant support (+debug/-debug)
- Optional dependency support (depends_on(... , when='<condition>')
- New config file format (YAML in ~/.spack)
- New Spec format (YAML in $prefix/.spack/spec.yaml)
 2015-05-18 16:16:20 -07:00
Matthew LeGendre
46b91ddf57 YAML config files for compilers and mirrors 2015-05-18 16:01:21 -07:00
Gregory L. Lee
50970b72d8 added py-pandas 2015-05-12 13:47:48 -07:00
Todd Gamblin
cd5fa128c5 Work on SPACK-41: Optional dependencies work for simple conditions. 
- Can depend conditionally based on variant, compiler, arch, deps, etc
  - normalize() is not iterative yet: no chaining depends_ons
  - really need a SAT solver, but iterative will at least handle
    simple cases.

- Added "strict" option to Spec.satisfies()
  - strict checks that ALL of other's constraints are met (not just
    the ones self shares)
  - Consider splitting these out into two methods: could_satisfy() and
    satisfies()
    - didn't do this yet as it would require changing code that uses
      satisfies()

- Changed semantics of __contains__ to use strict satisfaction (SPACK-56)

- Added tests for optional dependencies.

- The constrain() method on Specs, compilers, versions, etc. now
  returns whether the spec changed as a result of the call.
 2015-05-12 09:56:59 -07:00
Todd Gamblin
ef9deeccd1 Merge branch 'features/yaml-spec' into features/optional-deps 2015-05-10 19:28:47 -07:00
Todd Gamblin
43e5465592 Fix bug in directory layout hidden files() 2015-05-10 17:56:27 -07:00
Todd Gamblin
3b1898b8e4 Fix SPACK-40: Finish adding variant directive. 
- Variants are now declarable in packages using the variant() directive.
- Variants are checked - you can't just ask for a random variant, it has to be declared.
- conditional logic (@when, if, '+debug' in spec, etc.) still required in package to
  implement variant.
 2015-05-10 12:24:03 -07:00
Cyrus Harrison
8c4fe6d249 added simple spack package files for uncrustify and cppcheck 2015-04-30 22:42:53 -07:00
Alfredo Gimenez
0f5b26c9cd MemAxes and Mitos 2015-04-09 14:46:33 -07:00
Todd Gamblin
37a5c3b09f Version bump for adept-utils 2015-04-01 00:05:26 -07:00
Matthew LeGendre
89731d4a7d Add binutils as a gcc dependency so it doesn't use the system linker/assembler. 2015-03-30 14:23:02 -07:00
Matthew LeGendre
50687e08cb Fix QT with gcc 4.9 build error where QT's -Wl,--no-undefined interfered with gcc's implicit libgcc_s.so library 2015-03-27 17:32:37 -07:00
Todd Gamblin
c10773503b Merge branch 'benjaminwalters-develop' into features/blas 
Conflicts:
	var/spack/packages/lapack/package.py
 2015-03-26 00:31:34 -07:00
Todd Gamblin
fa53bb835c Merge branch 'kev40293-develop' into features/blas 2015-03-26 00:12:41 -07:00
Benjamin Walters
1b75b34eb6 Removed subprocess.call calls and replaced with spack symlink calls 2015-03-19 04:37:21 -05:00
Benjamin Walters
3d2df174d1 Added package files for Lapack (has virtual dependency blas) and Netlib blas (provides virtual dependency blas). 2015-03-19 03:20:24 -05:00
Todd Gamblin
32244ac733 MPICH provides environment vars to make MPI compilers behave like spack. 2015-03-13 13:32:24 -07:00
Todd Gamblin
b80e091f46 metis package. 2015-03-13 00:03:33 -07:00
Todd Gamblin
32e2f21e8d Working scotch package. 2015-03-12 08:49:45 -07:00
Todd Gamblin
81d518438c Point ravel download at the github release page. 2015-03-12 06:54:15 -07:00
Todd Gamblin
b24aca6da2 Add -Wno-dev to avoid cmake policy warnings. 2015-03-12 06:54:15 -07:00
Todd Gamblin
e624ebec07 Working ravel package. 2015-03-12 06:54:15 -07:00
Todd Gamblin
14a79a2ddf Add OTF package. 2015-03-12 06:54:14 -07:00
Todd Gamblin
d6c14f40b2 SAMRAI builds on cab with new URL. 2015-03-11 19:14:43 -07:00
Todd Gamblin
f8044e0290 SAMRAI URL update. 2015-03-11 18:58:29 -07:00
Todd Gamblin
fbebb94cd6 Add cram package. 2015-03-05 11:05:42 -08:00
Todd Gamblin
30e45df8a5 Updates to atlas packages. 2015-03-04 09:34:42 -08:00
Kevin Brandstatter
8921d52a82 Working lapack install linking to installed ATLAS 2015-03-03 22:27:16 -06:00
Kevin Brandstatter
0de021d427 Added LAPACK package file that depends on and builds against ATLAS 2015-03-03 19:21:02 -06:00
Kevin Brandstatter
08f37d478f Removed FIXME comments from atlas 2015-03-01 21:26:37 -06:00
Kevin Brandstatter
2f2eab0e15 Merge branch 'develop' of github.com:kev40293/spack into develop 2015-02-26 14:42:12 -06:00
Kevin Brandstatter
bbfc519ee5 Added packaging files for ATLAS with and without netlib's LAPACK 2015-02-26 14:41:46 -06:00
Todd Gamblin
ffdb90f39a Last minute Qt bugfix. 2015-02-24 10:42:35 -08:00
Todd Gamblin
daef78f538 Update packaging documentataion. 2015-02-23 10:31:22 -08:00
Saravan Pantham
14e70ad689 Added netcdf package support. 2015-02-18 18:05:57 -08:00
Todd Gamblin
c7b8a4e25c Fix for SPACK-46: cleanup spack clean, spack restage. 2015-02-18 14:00:37 -08:00
Todd Gamblin
db11373351 Resurrect combined qt4/5 package from b7dacb 2015-02-18 13:16:22 -08:00
Gregory L. Lee
59198e29f9 Merge branch 'develop' of ssh://cz-stash.llnl.gov:7999/scale/spack into develop 2015-02-18 13:14:26 -08:00
Gregory L. Lee
6e13d0985c fixed deps for python packages 2015-02-18 13:13:19 -08:00
Todd Gamblin
3e5aa4b0f5 llvm/clang version bump 2015-02-18 10:59:03 -08:00
Todd Gamblin
959ce4f985 Downgrade standard version of ImageMagick to a non-changing URL. 
- bleeding edge still available but commented by default.
 2015-02-18 10:59:03 -08:00
Gregory L. Lee
44003449d5 fixed install steps for version 4 2015-02-17 16:26:00 -08:00
Todd Gamblin
17ac609d23 Merge branch 'features/memaxes' into develop 
Conflicts:
	var/spack/packages/libpng/package.py
 2015-02-17 00:49:52 -08:00
Todd Gamblin
724b72bdaf take out dyninst 8.2 for now. 
- doesn't build correctly with boost 1.55
 2015-02-17 00:47:35 -08:00
Todd Gamblin
4af85441db Merge branch 'features/python-modules' into develop 2015-02-17 00:44:02 -08:00
Todd Gamblin
57f331e2ac Ignore conflicting nose tests in py-nose and py-matplotlib. 2015-02-17 00:22:18 -08:00
Todd Gamblin
67db8ddca8 Factor ignore logic into a predicate builder. 2015-02-17 00:21:15 -08:00
Todd Gamblin
06d6b0b205 More py-setuptools dependencies added. 2015-02-16 21:53:55 -08:00
Todd Gamblin
13376efafc Add package-specific rpath back to shiboken and pyside. 2015-02-16 21:53:34 -08:00
Todd Gamblin
614c22fc1b Allow forced deactivation -- best effort unlinking 
spack deactivate -f will unlink even if Spack thinks the package isn't enabled.
Made deactivate routines idempotent.
 2015-02-16 12:41:22 -08:00
Todd Gamblin
8aa3afcfde Python package cleanup. 
- Added a number of dependencies to python packages.
- Python packages may still not build without some OS support.
- Example: Numpy needs ATLAS, and will use a system ATLAS install.
  - Atlas requires turning off CPU throttling to build.
  - can't do this as a regular user -- how to build ATLAS with Spack
  - currnetly relying on a system ATLAS install.
 2015-02-15 23:04:20 -08:00
Todd Gamblin
847ed8ad39 Add libxslt, cleanup libxml2. 2015-02-15 23:04:04 -08:00
Todd Gamblin
b86eb69552 libgcrypt and libgpg-error packages. 2015-02-15 23:03:33 -08:00
Todd Gamblin
65d60f92f5 qhull package. 2015-02-15 23:02:51 -08:00
Todd Gamblin
36579844d9 Add Tcl/Tk packages. 2015-02-15 23:02:36 -08:00
Todd Gamblin
ce011501f9 Add R package. 2015-02-15 23:02:21 -08:00
Todd Gamblin
b11061f99d Rename py-pyqt4 to py-pyqt. 2015-02-15 12:40:02 -08:00
Todd Gamblin
2f67cdaf10 Better time output on build completion. 2015-02-15 12:39:10 -08:00
Todd Gamblin
3c0048dd89 py-sip installs properly into a prefix 2015-02-15 01:59:36 -08:00
Todd Gamblin
c0c0879924 Better extension activation/deactivation 2015-02-15 01:58:35 -08:00
Todd Gamblin
0c94a6e2b0 Merge branch 'features/python-modules' into features/memaxes 
Conflicts:
	var/spack/packages/qt/package.py
 2015-02-12 10:01:58 -08:00
Gregory L. Lee
5c2608b032 typo: Self -> self 2015-02-09 15:55:18 -08:00
Todd Gamblin
25af341954 Python package improvements. 2015-02-09 02:54:49 -08:00
Alfredo Gimenez
27617670f0 qt with hardware accelerated opengl working 2015-02-09 00:01:07 -08:00
Todd Gamblin
20ec80295d setup_extension_environment is now setup_dependent_environment. 
- other packages, like Qt, can now use this to set up relevant build
  variables and env vars for their dependencies.

- not just extensions anymore.
 2015-02-08 19:41:17 -08:00
Todd Gamblin
e51e01f4f0 Cleaned up python to remove redundant line. 2015-02-08 19:39:36 -08:00
Alfredo Gimenez
9e878075ac mesa 8.0.5 working 2015-02-08 16:09:13 -08:00
Alfredo Gimenez
cc684a3ebe older mesa for 2.6 kernel (not workin yet) 2015-02-08 13:34:45 -08:00
Alfredo Gimenez
1605e04d44 mesa and systemd (systemd not working yet) 2015-02-07 22:08:50 -08:00
Alfredo Gimenez
932f3930f4 util-linux added 2015-02-07 09:18:34 -08:00
Alfredo Gimenez
676cc84c9e more mesa dependencies 2015-02-06 17:24:55 -08:00
Alfredo Gimenez
5fdf5438ea flex and bison 2015-02-06 16:55:48 -08:00
Alfredo Gimenez
d95d48bbe6 py-mako and fix for setup-env.sh 2015-02-06 16:43:21 -08:00
Gregory L. Lee
5cc369c2b8 add dependent packages to PYTHONPATH for build 2015-02-06 16:35:35 -08:00
Alfredo Gimenez
a4ac1977a4 merge with python-modules 2015-02-06 16:27:33 -08:00
Todd Gamblin
457f2d1d51 Fix libpng to use a better URL 
Sourceforge URLs like this eventually die when the libpng version is bumped:
    http://sourceforge.net/projects/libpng/files/libpng16/1.6.14/libpng-1.6.14.tar.gz/download

But ones like this give you a "permanently moved", which curl -L will follow:
    http://download.sourceforge.net/libpng/libpng-1.6.16.tar.gz
 2015-02-06 08:37:22 -08:00