hlrs-software-stack/spack
7
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity
2586 commits 3 branches 52 tags 188 MiB
Commit graph

1383 commits

Author SHA1 Message Date
Denis Davydov
6699399e51 add when to depends_on scalapack 2016-03-25 17:00:42 +01:00
Denis Davydov
eec50b524b minor cleanup 2016-03-25 16:58:14 +01:00
Denis Davydov
5172f09b9f builds on OSX again (modulo CC wrappers are solved) 2016-03-25 16:47:48 +01:00
Denis Davydov
26a72619ae add missing sys 2016-03-25 12:42:26 +01:00
Denis Davydov
21e81e92a9 try to disable VerifyFortranC tests on Darwin 2016-03-25 12:05:48 +01:00
Denis Davydov
828aeefb1d minor cleanup 2016-03-25 12:01:00 +01:00
Denis Davydov
7f2db8c267 fix w GCC 4.8 on Ubuntu but broke w GCC 5.3/Clang on OSX 2016-03-25 11:56:41 +01:00
Denis Davydov
d096b155f4 fix filter_file 2016-03-25 11:56:40 +01:00
Denis Davydov
c33a63cabc fix python installation 2016-03-25 11:56:40 +01:00
Denis Davydov
416fcd0810 same 2016-03-25 11:56:40 +01:00
Denis Davydov
0fc9326a4c add variants 2016-03-25 11:56:40 +01:00
Denis Davydov
df995c4ef8 minor cleanup 2016-03-25 11:56:40 +01:00
Denis Davydov
8c9f887613 finally builds 2016-03-25 11:56:40 +01:00
Denis Davydov
3f12a51759 keep fiddling 2016-03-25 11:56:40 +01:00
Denis Davydov
e51fe2934e fiddle more 2016-03-25 11:56:40 +01:00
Denis Davydov
fade526ae4 remove tbb 2016-03-25 11:56:40 +01:00
Denis Davydov
7897f10126 fiddle with fortran 2016-03-25 11:56:40 +01:00
Denis Davydov
eb5b0767aa remove gfortran as we have libnotfound... 2016-03-25 11:56:40 +01:00
Denis Davydov
2fb599ea86 minor 2016-03-25 11:56:39 +01:00
Denis Davydov
50e4b609c6 minor 2016-03-25 11:56:39 +01:00
Denis Davydov
7e4e2c988a minor 2016-03-25 11:56:39 +01:00
Denis Davydov
88a7a23132 even more 2016-03-25 11:56:39 +01:00
Denis Davydov
2162627f35 more 2016-03-25 11:56:39 +01:00
Denis Davydov
bc3314a57d more and more 2016-03-25 11:56:39 +01:00
Denis Davydov
45b4895888 patch 2016-03-25 11:56:39 +01:00
Denis Davydov
b6a35716ce same 2016-03-25 11:56:39 +01:00
Denis Davydov
b91a155e8d more specific about dependencies 2016-03-25 11:56:39 +01:00
Denis Davydov
18db930866 rearrange 2016-03-25 11:56:39 +01:00
Denis Davydov
76006fc346 fix typo 2016-03-25 11:56:38 +01:00
Denis Davydov
30ba96e58f same 2016-03-25 11:56:38 +01:00
Denis Davydov
83fea631f1 extend trilinos 2016-03-25 11:56:38 +01:00
Massimiliano Culpo
f15249afe5 Merge branch 'develop' of https://github.com/LLNL/spack into packages/blas_lapack_providers 
Conflicts:
	var/spack/repos/builtin/packages/py-numpy/package.py
 2016-03-25 11:05:05 +01:00
Denis Davydov
3e39daeb12 add fPIC to MUMPS when building shared libs 2016-03-25 09:56:24 +01:00
Denis Davydov
fd67da607e make netcdf link against Spack's curl 2016-03-25 09:32:48 +01:00
Josh Sixsmith
540e57f026 Upload of GDAL, kealib, openjpeg, py-tuiview package builds. 2016-03-25 18:27:02 +11:00
Denis Davydov
fdd7e91ba0 add shared variant to mumps (needed for Trilinos) plus tests 2016-03-25 06:56:46 +01:00
Denis Davydov
03c8a91f6a parmetis: avoid hardcoding -lm; use same approach as in METIS 2016-03-24 22:33:10 +01:00
Denis Davydov
0d4d201b70 patch parmetis to use external GKlib 2016-03-24 21:24:03 +01:00
Denis Davydov
7fb463abb9 install GKlib headers along with METIS 2016-03-24 21:24:03 +01:00
Todd Gamblin
38ea75e8ca Merge pull request #490 from epfl-scitas/packages/atlas 
atlas : provides both 'blas' and 'lapack'
 2016-03-24 11:24:04 -07:00
Todd Gamblin
823edd0bb2 Merge pull request #627 from adamjstewart/features/numpy-scipy 
Simplify NumPy dependencies
 2016-03-24 11:05:09 -07:00
Alfredo Gimenez
254f65f299 Remove incorrect sanity check for libelf 2016-03-24 10:48:38 -07:00
Adam J. Stewart
8643e21913 Simplified NumPy dependencies 2016-03-24 12:34:58 -05:00
alalazo
758a9c9096 python extensions : create PYTHONPATH in module files 2016-03-24 10:57:46 +01:00
Todd Gamblin
7cf1b7ed51 Merge pull request #613 from davydden/superlu_dist_fix_lib 
fix superlu-dist lib installation
 2016-03-24 02:54:43 -07:00
Todd Gamblin
1306cdd998 Merge pull request #618 from epfl-scitas/fixes/espresso_no_module 
fix : no module file gets generated by espresso
 2016-03-24 02:53:56 -07:00
Todd Gamblin
4be8472f61 Merge pull request #612 from davydden/mumps_osx 
fix MUMPS build on OSX (set parallel=False)
 2016-03-24 02:53:29 -07:00
Todd Gamblin
e1848c1d28 Merge pull request #624 from davydden/parmetis_gnu 
fix parmetis on Ubuntu with GNU compilers by linking to lm
 2016-03-24 02:44:40 -07:00
Todd Gamblin
c83d22b5fc Merge pull request #587 from cyrush/cmake_pkg_openssl_as_variant 
cmake package: add variant for openssl support
 2016-03-24 02:42:39 -07:00
Denis Davydov
9b8b17b6f1 fix parmetis on Ubuntu with GNU compilers by linking to lm 2016-03-24 10:36:02 +01:00
Denis Davydov
4e5dfc8b18 fix missing (depricated) _dggsvd_ and _sggsvd_ in Openblas 0.2.16 2016-03-23 22:09:39 +01:00
alalazo
acaa589bdd Merge branch 'develop' of https://github.com/LLNL/spack into packages/blas_lapack_providers 
Conflicts:
	var/spack/repos/builtin/packages/netlib-lapack/package.py
 2016-03-23 17:25:00 +01:00
alalazo
34a8f0c96b espresso : fixes #454 2016-03-23 17:01:52 +01:00
Todd Gamblin
cc582dd4b4 Add mock python package. 2016-03-23 02:03:27 -07:00
Todd Gamblin
091fcc3aa9 Merge pull request #599 from davydden/slepc 
add Slepc package
 2016-03-23 01:53:32 -07:00
Todd Gamblin
a4f5084589 Merge pull request #609 from xjrc/packages/silo 
Update Package : Silo
 2016-03-23 01:52:56 -07:00
Todd Gamblin
71c976d212 Merge pull request #611 from davydden/p4est 
add p4est package
 2016-03-23 01:52:38 -07:00
Denis Davydov
01918a6f48 fix MUMPS build on OSX (set parallel=False) 2016-03-23 09:29:24 +01:00
Todd Gamblin
c4134ee71e Fix #608: broken numpy build. 
- Failed to catch all instances of modify_module when it was renamed
  to setup_dependent_package.

- Refactored remaining modify_module calls.

- Also modified Python's setup_dependent_package slightly: only
  creates empty site-packages directory for Python extensions now, not
  for all dependents.
 2016-03-23 00:36:32 -07:00
Denis Davydov
5b3c96a9bb fix superlu-dist lib installation 2016-03-23 08:07:45 +01:00
Joseph Ciurej
474db2085e Simplified the 'url_for_version' function for the 'Crypto++' package. 2016-03-22 15:55:54 -07:00
Denis Davydov
0ee993569f add deal.ii package 2016-03-22 23:04:59 +01:00
Denis Davydov
6c8d51f403 add p4est package 2016-03-22 22:58:14 +01:00
Denis Davydov
24264eb00e add slepc package 2016-03-22 22:44:10 +01:00
Denis Davydov
27f337aa11 petsc: set PETSC_DIR in dependent_env 2016-03-22 22:12:01 +01:00
Todd Gamblin
2d69f386d0 Merge pull request #600 from davydden/arpack_mpi_fix 
arpack: fix for +mpi variant
 2016-03-22 13:05:55 -07:00
Todd Gamblin
4a15477783 Merge pull request #605 from davydden/hypre_osx 
temporary fix Hypre for OSX by building static lib by default
 2016-03-22 12:42:14 -07:00
Todd Gamblin
8823a5ac1c Merge pull request #602 from davydden/oce 
add OCE package
 2016-03-22 12:41:14 -07:00
Todd Gamblin
cb2e6c9d02 Merge pull request #603 from davydden/tbb 
add Intel TBB package
 2016-03-22 12:40:49 -07:00
Todd Gamblin
4f44431900 Merge pull request #606 from davydden/gettext 
add gettext package
 2016-03-22 12:38:34 -07:00
Joseph Ciurej
1728a0c3e6 Updated the 'crypto++' package to use an improved URL formation scheme (inspired by changes made to the 'Silo' package). 2016-03-22 12:33:11 -07:00
Joseph Ciurej
d05e4581c9 Added the '+silex' variant to the Silo package. 
Added a number of different versions to the Silo package.
 2016-03-22 12:31:26 -07:00
Denis Davydov
fd1784369a add muparser package 2016-03-22 19:50:15 +01:00
Denis Davydov
5f68e14d3b add gettext package 2016-03-22 19:41:31 +01:00
Cyrus Harrison
e56f5c4d6b add Intel TBB package 2016-03-22 19:21:34 +01:00
Erik Schnetter
7618dc504c temporary fix Hypre for OSX by building static lib by default 2016-03-22 19:18:04 +01:00
Kelly (KT) Thompson
1f8d79b69a + Provide a ~perl variant to support building on systems w/o the perl-devel 
package installed.
 2016-03-22 09:33:49 -06:00
Denis Davydov
d25026b749 add OCE package 2016-03-22 16:26:16 +01:00
Kelly (KT) Thompson
3214cd0d56 Merge remote-tracking branch 'upstream/develop' into pkg-graphviz 2016-03-22 09:24:31 -06:00
Denis Davydov
6eb97a30a3 arpack: fix for +mpi variant 2016-03-22 14:24:27 +01:00
Todd Gamblin
e32eb7e990 Merge pull request #585 from davydden/mumps_w_parmetis 
fix mumps: when installed with parmetis has to be linked with metis
 2016-03-22 02:44:04 -07:00
Todd Gamblin
f323f54704 Merge pull request #591 from epfl-scitas/package/llvm 
llvm : added version 3.8.0
 2016-03-22 02:22:39 -07:00
Todd Gamblin
1a3bdf03c3 Merge pull request #598 from davydden/suite_sparse_rename 
Suite sparse rename
 2016-03-22 02:15:08 -07:00
Todd Gamblin
eed0ccad73 Merge pull request #597 from davydden/arpack 
arpack: add a patch for 3.3
 2016-03-22 02:10:14 -07:00
Todd Gamblin
a5a4cce7f1 Merge pull request #582 from KineticTheory/develop 
+ Provide fpic variant for netlib-lapack.
 2016-03-22 02:05:43 -07:00
Todd Gamblin
a26992ef55 Change from PR #552: rename setup_dependent_python_module -> setup_dependent_package 
- Fixed in package.py
- Fixed wrong prototypes in packages that use it.
- Fixed build_environment to set module variables properly
  - added hacky fix to ensure spec/package consistency in build processes.
  - Need to think about defensive spec copy done by `Repo.get`.  May be
    time to think about an immutable spec implementation.
 2016-03-22 01:56:16 -07:00
Denis Davydov
cb97e8dd93 adjust eigen and octave to use new names of suite sparse 2016-03-22 09:43:37 +01:00
Denis Davydov
3c5a1605d5 adjust the class name for suite sparse 2016-03-22 09:27:39 +01:00
Denis Davydov
aca8b5c89d move suite sparse to a proper folder 2016-03-22 09:27:00 +01:00
Denis Davydov
23bf70296e arpack: add a patch for 3.3 2016-03-22 09:24:15 +01:00
Todd Gamblin
3f32dd767e Merge pull request #589 from davydden/petsc_osx 
fix petsc on osx
 2016-03-22 00:33:34 -07:00
Kelly (KT) Thompson
7ec450912d + Provide subversion and required packages apr and apr-util. 
+ Installation of subversion may need to be modified to include python and perl
  bindings. I have provided comments to this end, but the code is not active.
 2016-03-21 21:14:03 -06:00
Kelly (KT) Thompson
039efd55d5 Merge remote-tracking branch 'upstream/develop' into pkg-graphviz 2016-03-21 20:43:22 -06:00
Kelly (KT) Thompson
8bf8617876 Merge remote-tracking branch 'upstream/develop' into pkg-numdiff 2016-03-21 20:42:21 -06:00
Kelly (KT) Thompson
4b46e21685 + Provide package numdiff. 2016-03-21 19:55:54 -06:00
Todd Gamblin
b1516f64eb Rename some environment methods to be less repetitive, add set_path. 2016-03-21 16:01:40 -07:00
Todd Gamblin
439d47b4e4 Refactor environment setup. 
- Gave setup_environment and setup_dependent_environment more similar
  signatures. They now allows editing the Spack env and the runtime
  env for *this* package and dependents, respectively.

- modify_module renamed to setup_dependent_python_module for symmetry
  with setup_dependent_environment and to avoid confusion with
  environment modules.

- removed need for patching Package objects at runtime.

- adjust packages to reflect these changes.
 2016-03-21 16:01:35 -07:00
Todd Gamblin
861a235ecb Merge pull request #552 from epfl-scitas/features/env_objects_flying_around 
enhancement proposal : customization of module files
 2016-03-21 15:56:20 -07:00
Kelly (KT) Thompson
799f1f6768 Merge remote-tracking branch 'upstream/develop' into pkg-graphviz 2016-03-21 16:24:17 -06:00
Todd Gamblin
624e56db6a Merge pull request #592 from mathstuf/paraview-python 
Paraview python
 2016-03-21 14:59:41 -07:00
Denis Davydov
953fb35f82 add superlu_dist package 2016-03-21 18:00:32 +01:00
Ben Boeckel
553fff270a paraview: disallow python3 
ParaView is not Python3-ready.
 2016-03-21 11:55:09 -04:00
Ben Boeckel
8e77f17760 paraview: fix variant description typo 2016-03-21 11:55:09 -04:00
Ben Boeckel
c5c92d50eb paraview: remove trailing whitespace 2016-03-21 11:24:36 -04:00
alalazo
efef229b85 Merge branch 'develop' of https://github.com/LLNL/spack into package/llvm 2016-03-21 16:22:34 +01:00
alalazo
7569204a53 llvm : does not support python 3 2016-03-21 16:18:02 +01:00
Denis Davydov
3a3443dff6 parmetis patches by PETSc developers 2016-03-21 15:14:48 +01:00
alalazo
3fcaf5b903 llvm : update to 3.8.0 2016-03-21 14:47:05 +01:00
Denis Davydov
b926d8a0cd build parmetis against external metis 2016-03-21 14:33:00 +01:00
alalazo
fbeffee91e Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around 
Conflicts:
	lib/spack/spack/package.py
	var/spack/repos/builtin/packages/netlib-scalapack/package.py
 2016-03-21 09:46:49 +01:00
Denis Davydov
7b283bfaff fix petsc on osx 2016-03-21 07:50:10 +01:00
Cyrus Harrison
bba66cbe28 cmake: depend on openssl when openssl variant=true 2016-03-20 19:27:22 -07:00
Cyrus Harrison
d493658a58 cmake package: add variant for openssl support 
The openssl variant defaults to true to preserve spack's
current CMake configuration, which is using OpenSSL.

Signed-off-by: Cyrus Harrison <cyrush@llnl.gov>
 2016-03-20 15:32:54 -07:00
Todd Gamblin
c0f0350634 Merge pull request #583 from davydden/openblas_osx 
fix openblas suffix for OS-X
 2016-03-20 03:37:30 -07:00
Denis Davydov
db61a09cf1 fix mumps: when installed with parmetis has to be linked with metis 2016-03-20 09:47:15 +01:00
Denis Davydov
95ad2875b6 fix scalapack suffix for osx 2016-03-20 09:27:07 +01:00
Denis Davydov
620c120503 fix openblas suffix for OS-X 2016-03-20 09:26:11 +01:00
Kelly (KT) Thompson
ed0b5e649d + Provide fpic variant for netlib-lapack. 2016-03-19 20:45:35 -06:00
alalazo
5f6f2d5f51 Revert "openssl : solved glitch to prevent spack to freeze when the network is unreachable" 
This reverts commit 4cf4bf3a03.
 2016-03-18 14:42:24 +01:00
alalazo
ec8cc2b528 PYTHONPATH : python patches methods for its extensions 2016-03-18 14:40:53 +01:00
alalazo
82ba0c6c07 Merge branch 'bugfix/openssl' into features/env_objects_flying_around 2016-03-18 11:08:55 +01:00
Erik Schnetter
3b24db92b5 Update PAPI to 5.4.3 2016-03-18 11:08:16 +01:00
alalazo
4cf4bf3a03 openssl : solved glitch to prevent spack to freeze when the network is unreachable 2016-03-18 11:05:59 +01:00
alalazo
f9438c75d0 Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around 2016-03-18 10:26:34 +01:00
Todd Gamblin
179ed7cce6 Merge pull request #566 from eschnett/eschnett/papi 
Update PAPI to 5.4.3
 2016-03-17 18:52:44 -07:00
Todd Gamblin
1689131043 Merge pull request #567 from eschnett/eschnett/openblas 
Update OpenBLAS to 0.2.16
 2016-03-17 18:52:32 -07:00
Todd Gamblin
a88c02854a Merge pull request #565 from eschnett/eschnett/curl 
Update curl to 7.47.1
 2016-03-17 18:52:02 -07:00
Erik Schnetter
1b279cd7ff Update OpenBLAS to 0.2.16 2016-03-17 21:51:26 -04:00
Erik Schnetter
802acb4d16 Update PAPI to 5.4.3 2016-03-17 21:50:21 -04:00
Todd Gamblin
90268876f7 Change sanity_check_[file|dir] to sanity_check_is_[file|dir], per #554 
- Add documentation as well.
 2016-03-17 18:49:58 -07:00
Erik Schnetter
9e4c757f50 Update curl to 7.47.1 2016-03-17 21:49:36 -04:00
alalazo
e558809043 python : fixed typo 2016-03-17 19:32:31 +01:00
alalazo
ac394718ec python : implemented possible solution 2016-03-17 18:22:07 +01:00
alalazo
f0f0663d1b package : split environment_modifications into setup_environment and setup_dependent_environment. 
package : renamed `module_modifications` to `modify_module` for consistency
 2016-03-17 15:11:39 +01:00
Kelly (KT) Thompson
f07d4c9439 + Provide ~perl and ~shared variants. 2016-03-16 21:30:41 -06:00
citibeth
fa2a66db67 1. Disabled git versions known to have vulnerabilities. 
2. Added autoconf command to allow building directly from GitHub source.
 2016-03-16 15:46:59 -04:00
Todd Gamblin
905549ea2d Merge pull request #555 from epfl-scitas/packages/binutils 
Adding latest version in binutils
 2016-03-16 08:39:13 -07:00
alalazo
597727f8be tclmodules : added hooks to process EnvironmentModifications objects 2016-03-16 15:19:13 +01:00
Nicolas Richart
9c29966674 Change urls in binutils to help 'spack checksum/versions' + adding latest version 2016-03-16 12:57:17 +01:00
alalazo
b45ec3f04e environment : simplified modification of the environment 2016-03-16 10:55:28 +01:00
alalazo
b2c98feea4 Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around 2016-03-16 09:02:35 +01:00
Todd Gamblin
68d22253ec Add sanity checks to the libelf build. 2016-03-15 17:22:48 -07:00
Matthew LeGendre
108ea1522a Merge pull request #549 from LLNL/bugfix/gh538-less-greedy-concretize 
Bugfix/gh538 less greedy concretize
 2016-03-15 16:18:54 -07:00
Todd Gamblin
cdd2ea3067 Merge pull request #537 from adamjstewart/features/octave 
Add GNU Octave package
 2016-03-15 11:23:40 -07:00
alalazo
572cb93bf8 package : renamed setup_dependent_environment to module_modifications 2016-03-15 14:05:30 +01:00
alalazo
c85888eb57 package : added environment_modifications 2016-03-15 13:36:41 +01:00
alalazo
bcea1df01c environment : refactoreded set_build_environment_variables 2016-03-15 10:49:33 +01:00
Adam J. Stewart
0d9a6d3c25 Updates to qrupdate 2016-03-14 14:19:30 -05:00
Todd Gamblin
f45b8b1083 Add some tests for packages with multiple virtual dependencies. 
- Added mock `hypre` package, depends on `lapack` and `blas`.

- test cases where some packages provide both `lapack` and `blas`, but
  others do not.
 2016-03-14 05:02:50 -07:00
Erik Schnetter
8b715d9c3f Update tmux 2016-03-13 21:31:48 -04:00
Elizabeth F
7cd478418d New version of LAPACK 2016-03-11 23:28:36 -05:00
Elizabeth F
90f2e40ff9 Added comment to Emacs. 2016-03-11 23:28:16 -05:00
Adam J. Stewart
145390c7f3 Add gl2ps and qrupdate packages 2016-03-11 16:57:37 -06:00
Todd Gamblin
081bdd0828 Merge pull request #528 from citibeth/efischer/160309-Emacs 
Added Emacs package
 2016-03-11 13:31:58 -08:00
Adam J. Stewart
6ec65cd4ca Add GNU Octave package 2016-03-11 15:03:37 -06:00
Todd Gamblin
4574f768ef Merge pull request #526 from KineticTheory/develop 
Provide instructions for cmake/3.5.0 (plus 2 new variants) and qt/5.4.2
 2016-03-11 09:20:47 -08:00
Kelly (KT) Thompson
f5e8857c5e + Rename variant 'sphinxbuild' to 'doc' as recommended in the discussion of 
PR#526. Also, remove a debug print statement that was accidentally committed.
 2016-03-11 09:51:12 -07:00
Kelly (KT) Thompson
280384fce3 Merge remote-tracking branch 'upstream/develop' into develop 2016-03-10 09:09:16 -07:00
Todd Gamblin
b637f75164 Merge branch 'mplegendre-features/external-packages' into develop 2016-03-10 02:04:44 -08:00
alalazo
4f14db8af2 netlib-lapack : optional dependency on external blas 2016-03-10 10:34:51 +01:00
Todd Gamblin
1fe196f95c whitespace and formatting 2016-03-10 01:29:55 -08:00
Todd Gamblin
ad6625456e Merge pull request #513 from alfredo-gimenez/develop 
Variants and fixes to thrift package
 2016-03-10 00:59:15 -08:00
Elizabeth F
b701aa10d4 Fixed up 2016-03-09 21:21:25 -05:00
Elizabeth F
267e83d8a7 Added emacs package. 2016-03-09 21:16:50 -05:00
Todd Gamblin
bf1639e044 Merge pull request #522 from epfl-scitas/bugfix/mpfr 
change of url for mpfr
 2016-03-09 17:17:23 -08:00
Kelly (KT) Thompson
23cbc2b1d9 + Provide download/build instructions for qt/5.4.2. 
- This version provides updates to provided cmake scripts that are required
    for building cmake-gui.
+ Provide download/build instructions for version 3.5.0.
  - When building the +qt variant, add a validate function to ensure that
    qt-5.4.0 is not used (this version of qt has errors related to cmake).
 2016-03-09 17:59:39 -07:00
Nicolas Richart
6e82ab1f15 change of url for mpfr 2016-03-09 21:18:44 +01:00
Todd Gamblin
b93a2ba1cf Merge pull request #520 from LLNL/bugfix/remove-hdf5-unsupported-variant 
Removing `unsupported` variant from HDF5.
 2016-03-09 11:39:06 -08:00
Kelly (KT) Thompson
113e942c3c Merge remote-tracking branch 'upstream/develop' into develop. 2016-03-09 12:38:48 -07:00
Todd Gamblin
45ef496dd5 Add some descriptive language to a list comprehension. 2016-03-09 11:26:37 -08:00
Alfredo Adolfo Gimenez
383e73a5f5 Remove unneccessary depends_on 2016-03-09 11:25:51 -08:00
Todd Gamblin
d06ebf23d4 Removing unsupported variant from HDF5. 
- `unsupported` shouldn't be a variant.
 2016-03-09 11:16:35 -08:00
Matthew LeGendre
87db69478d Merge branch 'develop' into features/external-packages 
Conflicts:
	lib/spack/spack/package.py
 2016-03-09 11:09:37 -08:00
Todd Gamblin
b43c277dc6 Merge @citibeth and @alalazo's petsc fixes from #515 and #517 2016-03-09 10:55:50 -08:00
Todd Gamblin
ad7d89b165 Merge branch 'efischer/160309-HypreFix' of git://github.com/citibeth/spack into citibeth-efischer/160309-HypreFix 2016-03-09 10:54:08 -08:00
Todd Gamblin
8ac1752743 Merge pull request #501 from adamjstewart/patches/m4 
Add patch to allow PGI to build M4
 2016-03-09 10:29:48 -08:00
Adam J. Stewart
8e76cda200 Patch config.hin, not extern-inline.m4 2016-03-09 10:41:31 -06:00
alalazo
f01d1c4385 petsc : added variants and logic to build various flavors 2016-03-09 14:36:37 +01:00
Elizabeth F
c67b922185 Added shared library capability. 2016-03-09 00:34:08 -05:00
Elizabeth F
5b22873b3d Fixed issues with hypre: 
1. --with-lapack-lib was wrong.
2. --with-MPI was wrong; set env vars for MPI wrappers instead.
3. Added version 2.10.1
4. Added shared library variant (True by default).  Hypre can build shared or static libraries, but not both in the same build.
 2016-03-09 00:27:25 -05:00
Alfredo Gimenez
0c7d0c0b6c Variants and fixes to thrift package 2016-03-08 12:26:40 -08:00
Adam J. Stewart
e0e545774a Add more versions to Autotools 2016-03-08 12:15:40 -06:00
Todd Gamblin
18ce5ccf8f Avoid race in pango's make install, set parallel=False 2016-03-08 02:49:11 -08:00
Adam J. Stewart
b7750cf61c Autoreconf is necessary after patch 2016-03-07 15:52:22 -06:00
Adam J. Stewart
1e7d946d91 Add patch to allow PGI to build M4 2016-03-07 12:37:51 -06:00
Todd Gamblin
96e1b2d25c Merge pull request #486 from RemoteConnectionManager/paraview_fix 
Paraview new version
 2016-03-07 02:48:12 -08:00
Todd Gamblin
bff7107f56 Merge pull request #491 from citibeth/efischer/160229-NewPackages-2 
(2) New packages added: blitz, netcdf-cxx4, netcdf-fortran, proj, udunits2
 2016-03-07 02:45:37 -08:00
Erik Schnetter
a399451e1e Update OpenSSL to 1.0.2g 2016-03-06 23:34:48 -05:00
citibeth
ae87948a23 Fixed URLs 
Removed vestigal mpi variant in netcdf-fortran
 2016-03-05 23:05:45 -05:00
Todd Gamblin
c59546fae0 Merge branch 'adamjstewart-features/libsigsegv' into develop 2016-03-05 15:15:08 -08:00
Todd Gamblin
7d847f4dc4 Minor tweaks to m4 -- be sure to add sigsegv args explicitly. 2016-03-05 15:14:21 -08:00
Todd Gamblin
07255da6e9 Merge branch 'features/libsigsegv' of https://github.com/adamjstewart/spack into adamjstewart-features/libsigsegv 2016-03-05 15:06:49 -08:00
Adam J. Stewart
220b6a9fee Make libsigsegv an optional dependency 2016-03-05 16:46:32 -06:00
Todd Gamblin
24f0757d82 Merge pull request #343 from adamjstewart/features/mpc 
Add different URL for older source code
 2016-03-05 14:37:43 -08:00
Todd Gamblin
3dd630d0a5 Make openssl a variant in libevent. 2016-03-05 14:33:23 -08:00
Todd Gamblin
0b864aacdc Merge branch 'eschnett/libevent' of https://github.com/eschnett/spack into eschnett-eschnett/libevent 2016-03-05 14:23:06 -08:00
Todd Gamblin
ac67f3b53e Merge pull request #487 from spakin/llvm-3.7.1 
Added LLVM 3.7.1 support
 2016-03-05 14:19:31 -08:00
Todd Gamblin
a9d7135c19 Merge pull request #495 from alfredo-gimenez/develop 
Fixed unmatched function signature for do_fetch in jdk package
 2016-03-05 14:16:09 -08:00
Mark Miller
f663d37da7 Adding zfp package. 2016-03-04 17:08:11 -08:00
Alfredo Gimenez
f90eaa5f46 Fixed unmatched function signature for do_fetch in jdk package 2016-03-04 14:53:08 -08:00
Adam J. Stewart
a7b918837e GNU m4 depends on libsigsegv 2016-03-04 15:22:28 -06:00
Elizabeth Fischer
648d08eb30 Update package.py 
Updated homepage URL to general NetCDF homepage.
 2016-03-04 12:05:43 -05:00
Elizabeth Fischer
b043c4a5b8 Update package.py 
Removed comments on configure options.
 2016-03-04 12:04:41 -05:00
Elizabeth F
0eb6ef2cd0 1. Removed fake MPI dependency from netcdf-cxx4 and netcdf-fortran. 
2. Removed Fortran bootstrap variant from netcdf.  Users who need NetCDF Fortran interface should install netcdf-fortran.

3. Added result of ./configure --help on the netcdf-fortran.  Verified  the package has no additional options that should be exposed through Spack.
 2016-03-04 11:14:52 -05:00
alalazo
a2af4940aa atlas : disabling parallel builds 2016-03-04 09:59:16 +01:00
alalazo
310099d888 atlas : provides blas and lapack 2016-03-04 09:32:01 +01:00
Scott Pakin
7183db1b7d Added LLVM 3.7.1 support 2016-03-03 11:30:57 -07:00
alalazo
63ae407169 netlib-lapack : unified build with netlib-blas 
openssl : updated version
py-numpy : updated dependencies
 2016-03-03 16:39:21 +01:00
Luigi Calori
f5cc63156c Merge branch 'develop' of https://github.com/RemoteConnectionManager/spack into paraview_fix 
merge upstream develop
 2016-03-03 12:43:38 +01:00
citibeth
976d0240c4 Removed FIXMEs. 2016-03-02 18:58:47 -05:00
Todd Gamblin
8421dcb762 Merge pull request #452 from epfl-scitas/llvm/cleanup 
Cleaned package : llvm
 2016-03-02 01:32:08 -08:00
Todd Gamblin
9c565b155a Merge pull request #462 from xjrc/packages/silo 
Update Package : Silo
 2016-03-02 01:31:10 -08:00
Kelly (KT) Thompson
8174489787 + Provide two new variants for cmake: 
1) +qt          - build the cmake-gui Qt application.
                  - adds a dependency on Qt.
  2) +sphinxbuild - build the html CMake documentation.
                  - adds a dependency on python and py-sphinx
 2016-03-01 15:25:57 -07:00
citibeth
eb1d90a8cf Undid accidental change on this branch. 2016-02-29 23:31:54 -05:00
Elizabeth F
15ae92aae9 New packages added: blitz, netcdf-cxx4, netcdf-fortran, proj, udunits2 2016-02-29 23:21:44 -05:00
Elizabeth F
e414c5fdfb Added missing cmake dependencies 2016-02-29 23:21:08 -05:00
Ian Lee
67f327f805 Updated links to use new llnl.gov address 2016-02-28 19:47:19 -08:00
Luigi Calori
8f3ac9ac8b adding new version to praview, compiled with spack -d install -j 8 --keep-stage paraview@5.0.0+qt+python+tcl+opengl2%gcc@4.8.2 ^netcdf -mpi 2016-02-27 01:40:32 +01:00
Joseph Ciurej
30d9ca2bde Updated the silo package and added the '+fortran' variant. 2016-02-26 16:06:17 -08:00
Erik Schnetter
20845a739f Libevent depends on OpenSSL 2016-02-24 22:18:51 -05:00
alalazo
976ae91dcc llvm : removed duplicate version 2016-02-24 14:11:57 +01:00
Todd Gamblin
0d23ff92b0 Merge pull request #446 from LLNL/bugfix/python_config_compiler 
modify compiler commands in python config files, fix for #431
 2016-02-24 10:52:06 +09:00
Todd Gamblin
87610a5102 Merge pull request #448 from epfl-scitas/packages/gromacs 
Added package : gromacs
 2016-02-24 10:49:06 +09:00
Tom Scogland
5c8dd6c3c8 llvm trunk version 
Adding a trunk version to the llvm package.  This has all the features
and requirements of the others, with the additional caveat that the llvm
project makes no guarantee that trunk on all repositories together will
necessarily make a working compiler.  It has been tested, and worked
with a version today, but not yesterday, so if you test keep that in
mind.
 2016-02-20 17:23:55 -08:00
Todd Gamblin
97c3854c40 Merge pull request #422 from epfl-scitas/packages/openssl_url 
openssl : url computation
 2016-02-19 16:28:02 -08:00
alalazo
30c3047482 gromacs : added package 2016-02-19 12:39:38 +01:00
Todd Gamblin
3c1aa9a4ad Merge pull request #298 from epfl-scitas/refactoring/resource_directive 
refactoring proposal : composite for Stage and FetchStrategy
 2016-02-18 23:13:12 -08:00
Gregory L. Lee
19d10291bf modify compiler commands in python config files, fix for #431 2016-02-18 15:45:29 -08:00
Joseph Ciurej
6cd76d69c3 Fixed the "+shared" variant in the "hdf5" package. 2016-02-17 11:51:24 -08:00
Joseph Ciurej
0388093f7a Changed the hdf5 "+static" variant to become the "+shared" variant. 2016-02-16 17:33:19 -08:00
Joseph Ciurej
fca7ef2f7b Moved "Triangle" to "triangle" to be more in line with Spack package naming conventions. 2016-02-16 17:23:37 -08:00
Joseph Ciurej
8cab10214e Added the installation files for the "ExodusII" package. 
Added the "+static" variant to "hdf5" to enable "ExodusII" support.
 2016-02-16 16:43:24 -08:00
Joseph Ciurej
09254014b1 Added the installation files for the "TetGen" package. 2016-02-16 13:24:01 -08:00
Joseph Ciurej
3c8bbeafc7 Added the installation files for the "Triangle" package. 2016-02-16 13:01:18 -08:00
Joseph Ciurej
9a6221ea40 Added the installation files for the "ndiff" package. 2016-02-16 12:47:14 -08:00
Joseph Ciurej
db50f52bbc Adding the "Crypto++" package installation files. 2016-02-16 11:40:00 -08:00
Todd Gamblin
9e4671a4b4 Merge pull request #340 from adamjstewart/features/xz 
Remove unnecessary URLs
 2016-02-16 10:24:42 -08:00
Adam J. Stewart
bf162e60f1 Add latest version 2016-02-15 10:53:50 -06:00
Todd Gamblin
d8c0edcc81 Minor code cleanup for gcc. 2016-02-14 14:40:25 -08:00
Todd Gamblin
63911d4165 Merge pull request #354 from eschnett/eschnett/libedit 
libedit depends on ncurses
 2016-02-12 10:33:08 -08:00
Erik Schnetter
8e33cc1ae1 Properly wrap all long lines 2016-02-12 13:11:45 -05:00
Erik Schnetter
77c17e1d92 Since my last patch didn't get traction, here is a new approach to building gcc on Darwin: 
- Add a variant specifying whether to build with binutils, defaulting to true
- Auto-detect whether this is Darwin; if so, set binutils and gold defaults to false, as they don't work on Darwin
- Disable Go, which doesn't build on Darwin
- Clean up handling configure options
 2016-02-12 12:52:47 -05:00
alalazo
247a4bc751 mpich : added back MPI_F90 2016-02-12 12:15:09 +01:00
Massimiliano Culpo
70985170e5 qe : compiled on rhle6 2016-02-12 12:08:31 +01:00
Erik Schnetter
d7f674ce96 libedit depends on ncurses 2016-02-11 14:53:20 -05:00
alalazo
e8704433de espresso : added directories to search path 2016-02-11 18:57:40 +01:00
alalazo
b272a8881b espresso : fixed dependency handling 2016-02-11 18:18:05 +01:00
alalazo
ca3cdb4458 espresso : current working tree 2016-02-11 17:45:09 +01:00
alalazo
157ec210a7 espresso : synchronized with current develop 2016-02-11 13:05:31 +01:00
alalazo
e7454132a2 Merge branch 'develop' of https://github.com/LLNL/spack into packages/espresso 2016-02-11 13:03:47 +01:00
Todd Gamblin
bcf705b85e Merge pull request #432 from RemoteConnectionManager/paraview_fix 
Paraview fix
 2016-02-10 13:59:08 -08:00
Todd Gamblin
e23c260cb0 Merge pull request #402 from epfl-scitas/bugfix/netlib-scalapack 
Bugfix: netlib-scalapack does not work with all versions of python
 2016-02-10 11:40:31 -08:00
Luigi Calori
d7b3ed08ab add variant to select OpenGL2 Paraview backend 2016-02-10 15:40:05 +01:00
Luigi Calori
a1bd65550e fix a reported hash mismatch on netcdf-4.4.0 tar download 2016-02-10 15:17:54 +01:00
Luigi Calori
fe8aca630c add a variant to Qt for make dependency on mesa swlwctable 2016-02-10 14:58:00 +01:00
Luigi Calori
f729cf621a fixing qhull: seems that dependency on cmake is essential when it is used 2016-02-10 13:29:36 +01:00
alalazo
71a25a109a arpack-ng : added package 2016-02-05 11:00:37 +01:00
Todd Gamblin
15324c276f Merge pull request #426 from epfl-scitas/packages/suitesparse 
Added package : SuiteSparse
 2016-02-04 18:08:07 -07:00
alalazo
e2a95d4b50 eigen : added support for SuiteSparse 2016-02-04 16:27:26 +01:00
alalazo
e3a0e1881d suitesparse : basic implementation 2016-02-04 16:00:39 +01:00
alalazo
031c292136 dakota : basic installation 2016-02-04 13:48:21 +01:00
Adam J. Stewart
e1b3c286ef Add url for cmake, simplify url_for_version 2016-02-03 16:28:09 -06:00
Todd Gamblin
f38851b73d Merge remote-tracking branch 'github/pull/99' into develop 
Conflicts:
	var/spack/repos/builtin/packages/cmake/package.py
 2016-02-03 14:24:59 -07:00
Todd Gamblin
72ca311f17 Merge pull request #414 from epfl-scitas/issues/trilinos_385 
fix : trilinos and dependencies
 2016-02-03 11:42:53 -07:00
Todd Gamblin
c5455ceee5 Merge pull request #417 from mathstuf/hdf5-unsupported-flag 
hdf5: always pass the unsupported flag
 2016-02-03 08:56:30 -07:00
Todd Gamblin
5a3338323c Merge pull request #419 from adamjstewart/features/libgpg-error 
Add latest libgpg-error version
 2016-02-03 08:56:06 -07:00
Todd Gamblin
8a4b86dac9 Merge pull request #420 from adamjstewart/features/qhull 
Add latest qhull version
 2016-02-03 08:55:32 -07:00
Todd Gamblin
bc4bf71d8f Merge pull request #421 from adamjstewart/features/phonopy 
Add Phonopy and PyYAML Python modules
 2016-02-03 08:54:22 -07:00
Todd Gamblin
fe358e24e3 Merge pull request #423 from epfl-scitas/packages/opencv 
Added package : OpenCV
 2016-02-03 08:52:58 -07:00
alalazo
44c1b06609 opencv : added package 2016-02-03 13:36:25 +01:00
alalazo
587d356d6e openssl : added logic to version computation. The package now warns user if he depends on an old version of the library 2016-02-03 08:59:26 +01:00
Adam J. Stewart
d2fb1522a3 Add Phonopy and PyYAML Python modules 2016-02-02 12:54:24 -06:00
Adam J. Stewart
ab3698e3a4 Add latest qhull version 2016-02-02 11:42:31 -06:00
Adam J. Stewart
422e87badb Add latest libgpg-error version 2016-02-02 10:57:58 -06:00
Ben Boeckel
2b140b9a34 hdf5: default +unsupported to on 
This flag can end up being required if a dependency tree ends up needing
hdf5+cxx+parallel, but nothing turns it on. Since the core spack code
puts this together, it ends up that the end user needs to specify it
manually. Instead, just assume an unsupported configuration (since these
*are* useful setups) and if anyone wants to seek upstream support,
masking the flag can be done.
 2016-02-01 11:46:33 -05:00
alalazo
c8d2275c06 opencv : reverted url_for_version modifications 2016-02-01 10:56:48 +01:00
alalazo
e67507478a opencv : reverted url_for_version modifications 2016-02-01 10:55:39 +01:00
alalazo
b0707a61e7 Merge branch 'develop' of https://github.com/LLNL/spack into issues/trilinos_385 2016-02-01 10:54:17 +01:00
Todd Gamblin
9eb037bc87 Merge pull request #415 from adamjstewart/features/hwloc 
Checksum fix for hwloc
 2016-02-01 02:41:47 -07:00
Todd Gamblin
140510fedf Merge pull request #408 from adamjstewart/features/fish 
Modify url settings for fish package
 2016-02-01 02:39:54 -07:00
alalazo
360abb070a netcdf : fixed typo in configure option 
openssl : smarter URL computation
 2016-02-01 08:33:03 +01:00
Gregory L. Lee
3bf6fed7b3 updated openssl version 2016-01-29 11:29:27 -08:00
Adam J. Stewart
d14d50beb6 Checksum fix for hwloc 2016-01-29 09:47:57 -06:00
Abhishek Kulkarni
74225544c6 Rename the hpx package to hpx-5. 2016-01-29 10:35:54 -05:00
Massimiliano Culpo
cd54793913 Cleaning up 2016-01-29 11:42:06 +01:00
alalazo
b574c4ad51 trilinos : updated package to meet changes in dependencies 2016-01-29 08:57:07 +01:00
Abhishek Kulkarni
5907cc0de5 Merge remote-tracking branch 'upstream/develop' into develop 2016-01-29 00:32:34 -05:00
Abhishek Kulkarni
2bea7f8d69 Add the HPX-5 package. 2016-01-29 00:29:20 -05:00
Todd Gamblin
9fb5ddbb4c Merge pull request #411 from adamjstewart/features/pnetcdf 
Add PnetCDF and M4 packages
 2016-01-28 20:52:59 -07:00
David Beckingsale
d9548c01af Correct package URL 2016-01-28 15:47:37 -07:00
Adam J. Stewart
4f34031534 Add PnetCDF and M4 packages 2016-01-28 15:41:58 -06:00
David Beckingsale
7e65f4da82 Add the Caliper package 2016-01-28 13:22:56 -08:00
Gregory L. Lee
0e52c30bb8 added py-wheel package 2016-01-28 10:42:46 -08:00
Adam J. Stewart
06f3cc33ba Modify url settings for fish package 2016-01-28 11:41:12 -06:00
alalazo
07bb6fef01 resource directive : now works with all the fetch strategies available 2016-01-28 10:58:56 +01:00
Adam J. Stewart
6122642b81 More NetCDF changes 2016-01-27 16:16:33 -06:00
Nicolas Richart
f1d8f30342 Bug fix: precedence in % operator seems to change depending in the python version 2016-01-27 10:54:41 +01:00
Todd Gamblin
90750f59c1 Merge pull request #400 from adamjstewart/features/netcdf 
Extensive modifications to NetCDF package
 2016-01-26 19:31:14 -07:00
Tom Scogland
23af31cb1c adding the cmocka unit testing library 2016-01-26 17:55:32 -08:00
Todd Gamblin
c344b30fc4 Merge pull request #342 from adamjstewart/features/hwloc 
Add url_for_version function to calculate url
 2016-01-26 16:01:17 -08:00
Todd Gamblin
d7bd023afa Merge pull request #339 from adamjstewart/features/hdf 
Add HDF package
 2016-01-26 15:51:57 -08:00
Adam J. Stewart
81ccba202c Make szip a variant 2016-01-26 15:38:22 -06:00
Adam J. Stewart
c6bb00085f Extensive modifications to NetCDF package 2016-01-26 12:04:48 -06:00
Adam J. Stewart
1d18f2031c Add szip variant 2016-01-25 14:57:33 -06:00
Matthew LeGendre
fa888a4ba1 Merge branch 'develop' into features/external-packages 
Conflicts:
	lib/spack/spack/cmd/mirror.py
	lib/spack/spack/concretize.py
	lib/spack/spack/config.py
	lib/spack/spack/spec.py
	lib/spack/spack/stage.py
	var/spack/packages/mvapich2/package.py
 2016-01-25 10:52:17 -08:00
Todd Gamblin
b6731ea47c Merge pull request #336 from scheibelp/features/boost-additive-libs 
additive compilation of boost libraries
 2016-01-22 14:09:19 -08:00
Peter Scheibel
a653d2f5e2 Slightly more robust approach for setting defaults for noinstall_libs 2016-01-22 13:43:16 -08:00
Peter Scheibel
9f99ee61c7 1. added default install libs (atomic, test, locale, program_options) 
2. clarify comment for default_noinstall_libs
3. renamed regex_icu variant to icu_support (both the locale and regex libs can
use it)
4. explicitly set b2 install ICU_PATH when regex_icu is activated
 2016-01-22 13:25:45 -08:00
Alfredo Gimenez
10de5a3ec7 Patch fix for boost@1.60.0%gcc@4.4.7 2016-01-22 13:02:18 -08:00
Peter Scheibel
4a55b97d11 Fixed reference 2016-01-22 12:37:12 -08:00
Peter Scheibel
2e58bc3113 Sticking with additive approach but now most libraries are installed by default. 2016-01-21 19:57:49 -08:00
Erik Schnetter
2f70c842b8 Disable patch that was merged into upstream in 1.10.2 2016-01-21 14:13:39 -05:00
Erik Schnetter
6b3f023d98 Update OpenMPI to 1.10.2 2016-01-21 14:05:16 -05:00
Todd Gamblin
10848c2e9a Refactor args for Executable.__call__ 
- simplify output, error, and input redirection
- `return_output=True` is now `output=str`
- `return_output=True` will still work for the time being but is
  deprecated.

- previously you could say `return_output=True` and `output=<stream>`,
  which wouldn't actually write to the stream.  Now you actually can't
  specify erroneous cases since there is only one parameter with
  mutually exclusive options..
 2016-01-21 10:46:33 -08:00
Todd Gamblin
25f7dbd3e9 Merge pull request #384 from epfl-scitas/packages/elpa 
added package : elpa
 2016-01-21 09:14:28 -08:00
Adam J. Stewart
03d5ee6738 Remove constraint on dependency version 2016-01-21 10:02:33 -06:00
Adam J. Stewart
ea9d0c0263 Remove constraints on dependency versions 2016-01-21 09:58:47 -06:00
Adam J. Stewart
950246b331 Remove constraint on dependency version 2016-01-21 09:54:24 -06:00
alalazo
d9b344a247 Merge branch 'develop' of https://github.com/LLNL/spack into packages/elpa 2016-01-21 12:05:28 +01:00
Todd Gamblin
f0a6bfa23c Merge pull request #376 from adamjstewart/features/mvapich2 
Various updates to MVAPICH2 package
 2016-01-21 01:59:35 -08:00
Todd Gamblin
dab65e4ba6 Merge pull request #380 from epfl-scitas/packages/mumps 
Adding packages MUMPS and ScaLAPACK
 2016-01-21 01:58:57 -08:00
alalazo
785c01218f elpa : added missing dependencies 2016-01-21 10:06:43 +01:00
alalazo
88f2a1d43a Merge remote-tracking branch 'scitas/packages/mumps' into packages/elpa 2016-01-21 08:34:44 +01:00
alalazo
a8132470e4 Merge branch 'develop' into packages/elpa 2016-01-21 08:33:59 +01:00
Nicolas Richart
b71b478a36 Minor correction to install mumps+mpi 2016-01-20 18:31:02 +01:00
alalazo
19caac69d8 openmpi : turned torque support into a variant (default false) 
hdf5 : fixed a few bugs, removed suspicious macro deinition, etc.
 2016-01-20 15:22:49 +01:00
Nicolas Richart
974fc65e0f renaming packages to follow changes on develop 2016-01-20 14:38:55 +01:00
Nicolas Richart
65f65ec4e4 Adding MUMPS and ScaLAPACK 2016-01-20 14:21:44 +01:00
alalazo
ab27fdc692 elpa : commit partial package. Blocked by missing scalapack 2016-01-20 09:35:15 +01:00
Peter Scheibel
965af75d23 Merge branch 'develop' into features/boost-additive-libs 2016-01-19 17:27:18 -08:00
Adam J. Stewart
98706d31dc Various updates to MVAPICH2 package 
Use url_for_version function to specify urls
Add version 2.2b
Add dedicated MRAIL variant
Fix typo
Make fortran compiler flags more specific
 2016-01-19 12:46:15 -06:00
Todd Gamblin
9be37da077 Merge pull request #373 from adamjstewart/features/mpich 
Add verbs variant, remove deprecated configure flags
 2016-01-19 08:59:59 -08:00
alalazo
e121faffa1 eigen : added package 2016-01-19 17:26:26 +01:00
Adam J. Stewart
0d42cdaffd Merge branch 'develop' into features/hdf 2016-01-19 10:09:25 -06:00
Adam J. Stewart
530f8e5b26 Merge branch 'develop' into features/hdf 
* develop: (85 commits)
  Make libxcb compile with gcc 4.9.
  disable parallel install for glib (found races)
  disable cairo-trace, which is incompatible with older libiberty.h.
  Fix LaunchMon on newer gcc versions.
  Simplify output redirection in spack.util.executable
  Allow completely empty config files.
  Update cmake package to use http in all URLs.
  Fix create, diy, edit, and repo commands to use multiple repos.
  Add namespace option to find command.
  Temporary fix: Clang is the default compiler on Mac OS X.
  Netcdf requires cmake >=2.8.12
  Mbedtls depends on cmake
  Update libtool to 2.4.6
  Update Julia to 0.4.3
  Make binutils build on OS X
  Add verbs and psm variants
  py-matplotlib: depend on freetype
  py-numpy: make blas/lapack optional dependencies
  qhull: apply patch to work with libc++'s standard library
  New package GNU tar
  ...
 2016-01-19 10:07:21 -06:00
Adam J. Stewart
fbab88b0e1 Merge branch 'develop' into features/xz 
* develop: (85 commits)
  Make libxcb compile with gcc 4.9.
  disable parallel install for glib (found races)
  disable cairo-trace, which is incompatible with older libiberty.h.
  Fix LaunchMon on newer gcc versions.
  Simplify output redirection in spack.util.executable
  Allow completely empty config files.
  Update cmake package to use http in all URLs.
  Fix create, diy, edit, and repo commands to use multiple repos.
  Add namespace option to find command.
  Temporary fix: Clang is the default compiler on Mac OS X.
  Netcdf requires cmake >=2.8.12
  Mbedtls depends on cmake
  Update libtool to 2.4.6
  Update Julia to 0.4.3
  Make binutils build on OS X
  Add verbs and psm variants
  py-matplotlib: depend on freetype
  py-numpy: make blas/lapack optional dependencies
  qhull: apply patch to work with libc++'s standard library
  New package GNU tar
  ...
 2016-01-19 10:05:50 -06:00
Adam J. Stewart
58f18d5b12 Merge branch 'develop' into features/hwloc 
* develop: (85 commits)
  Make libxcb compile with gcc 4.9.
  disable parallel install for glib (found races)
  disable cairo-trace, which is incompatible with older libiberty.h.
  Fix LaunchMon on newer gcc versions.
  Simplify output redirection in spack.util.executable
  Allow completely empty config files.
  Update cmake package to use http in all URLs.
  Fix create, diy, edit, and repo commands to use multiple repos.
  Add namespace option to find command.
  Temporary fix: Clang is the default compiler on Mac OS X.
  Netcdf requires cmake >=2.8.12
  Mbedtls depends on cmake
  Update libtool to 2.4.6
  Update Julia to 0.4.3
  Make binutils build on OS X
  Add verbs and psm variants
  py-matplotlib: depend on freetype
  py-numpy: make blas/lapack optional dependencies
  qhull: apply patch to work with libc++'s standard library
  New package GNU tar
  ...
 2016-01-19 10:01:42 -06:00
Adam J. Stewart
d20ca32440 Merge branch 'develop' into features/mpc 
* develop: (85 commits)
  Make libxcb compile with gcc 4.9.
  disable parallel install for glib (found races)
  disable cairo-trace, which is incompatible with older libiberty.h.
  Fix LaunchMon on newer gcc versions.
  Simplify output redirection in spack.util.executable
  Allow completely empty config files.
  Update cmake package to use http in all URLs.
  Fix create, diy, edit, and repo commands to use multiple repos.
  Add namespace option to find command.
  Temporary fix: Clang is the default compiler on Mac OS X.
  Netcdf requires cmake >=2.8.12
  Mbedtls depends on cmake
  Update libtool to 2.4.6
  Update Julia to 0.4.3
  Make binutils build on OS X
  Add verbs and psm variants
  py-matplotlib: depend on freetype
  py-numpy: make blas/lapack optional dependencies
  qhull: apply patch to work with libc++'s standard library
  New package GNU tar
  ...
 2016-01-19 09:58:07 -06:00
Adam J. Stewart
f48fc0d8b1 Revert deprecated configure flags 2016-01-19 09:43:28 -06:00
Adam J. Stewart
16f1267c29 Merge branch 'develop' into features/mpich 
* develop: (43 commits)
  Make libxcb compile with gcc 4.9.
  disable parallel install for glib (found races)
  disable cairo-trace, which is incompatible with older libiberty.h.
  Fix LaunchMon on newer gcc versions.
  Simplify output redirection in spack.util.executable
  Allow completely empty config files.
  Fix create, diy, edit, and repo commands to use multiple repos.
  Add namespace option to find command.
  Temporary fix: Clang is the default compiler on Mac OS X.
  update compiler config test.
  add sanity check on config write as well as validation on read.
  Add jsonschema validation for config files.
  Make text wrapping off by default in tty, add a kwarg for it.
  add/remove/list working for new config format.
  Add Python 3 aliases to our argparse backport.
  All tests that call concretize() need to be MockPackagesTests.
  Fix bug in tests.
  Rework mirror configuration.
  Rework compiler configuration and simplify config.py logic.
  Remove mock_configs; tests no longer modify spack home directory.
  ...
 2016-01-19 09:37:53 -06:00
Todd Gamblin
01c5b53ba1 Make libxcb compile with gcc 4.9. 2016-01-19 01:16:15 -08:00
Todd Gamblin
047f1b9de9 disable parallel install for glib (found races) 2016-01-19 01:16:15 -08:00
Todd Gamblin
b7b4faff96 disable cairo-trace, which is incompatible with older libiberty.h. 2016-01-19 01:16:14 -08:00
Todd Gamblin
67ea7ce0ab Fix LaunchMon on newer gcc versions. 2016-01-19 01:16:14 -08:00
Todd Gamblin
8d6342c53d Merge branch 'mplegendre-multi_pkgsrc_roots' into develop 
- This moves var/spack/packages to var/spack/repos/builtin/packages.

- Packages that did not exist in the source branch, or were changed in
  develop, were moved into var/spack/repos/builtin/packages as part of
  the integration.

Conflicts:
	lib/spack/spack/test/unit_install.py
	var/spack/repos/builtin/packages/clang/package.py
 2016-01-19 01:16:08 -08:00
Adam J. Stewart
58162ec170 Add verbs variant, remove deprecated configure flags 2016-01-18 16:03:41 -06:00
Todd Gamblin
d802165e03 Merge pull request #355 from eschnett/eschnett/llvm 
LLVM depends on cmake, and does not depend on isl
 2016-01-17 19:24:17 -08:00
Todd Gamblin
4bab6f9fdb Update cmake package to use http in all URLs. 2016-01-17 18:55:36 -08:00
Todd Gamblin
afcd5420ee Merge pull request #356 from eschnett/eschnett/tar 
New package GNU tar
 2016-01-17 18:49:14 -08:00
Todd Gamblin
85e8f8eb6a Merge pull request #353 from eschnett/eschnett/ncurses 
Install ncurses properly
 2016-01-17 18:49:00 -08:00
Todd Gamblin
635e053e6d Merge pull request #358 from adamjstewart/features/openmpi 
Add psm and verbs variants
 2016-01-17 18:45:13 -08:00
Todd Gamblin
77c6038711 Merge pull request #370 from eschnett/eschnett/netcdf-cmake 
Netcdf requires cmake >=2.8.12
 2016-01-17 18:31:56 -08:00
Todd Gamblin
a473830533 Merge pull request #367 from eschnett/eschnett/mbedtls-cmake 
Mbedtls depends on cmake
 2016-01-17 18:26:07 -08:00
Todd Gamblin
99390be127 Merge pull request #366 from eschnett/eschnett/libtool-2.4.6 
Update libtool to 2.4.6
 2016-01-17 18:25:55 -08:00
Todd Gamblin
c20f8eb5b3 Merge pull request #365 from eschnett/eschnett/julia-0.4.3 
Update Julia to 0.4.3
 2016-01-17 18:25:45 -08:00
Todd Gamblin
1a145f68a7 Merge pull request #362 from eschnett/eschnett/binutils-osx 
Make binutils build on OS X
 2016-01-17 18:25:24 -08:00
Erik Schnetter
81f1311a60 Netcdf requires cmake >=2.8.12 2016-01-17 14:57:08 -08:00
Erik Schnetter
f4b87e2967 Mbedtls depends on cmake 2016-01-17 11:05:15 -05:00
Erik Schnetter
60656b6255 Update libtool to 2.4.6 2016-01-17 11:03:40 -05:00
Erik Schnetter
e585a5d8a3 Update Julia to 0.4.3 2016-01-17 11:02:30 -05:00
Erik Schnetter
981cefe8d3 Make Boost build with MPI on OS X 
Boost does not build on OS X with either gold or binutils. The gold linker does not exist on Darwin, and binutils on Darwin provides an assembler that doesn't work for Boost.

- Introduce a variant that specifies whether to build with binutils, defaulting to true for backward compatibility
- Auto-detect whether we build on Darwin; in this case, set the gold and binutils variant defaults to false
- Clean up configure flags for as and ld
 2016-01-17 10:54:12 -05:00
Erik Schnetter
36a428b8fc Make binutils build on OS X 
Binutils defines several global variables multiple times. Apparently this works fine under Linux, but it leads to a linker error on Darwin. Rename these global variables.

Note that binutils on OS X is still not really useful, as important tools (e.g. ld) are not supported.
 2016-01-17 10:49:13 -05:00
Peter Scheibel
d22cf1aed1 1. raise an exception if the multithreaded and singlethreaded options are both 
disabled
2. invoke the b2 installation once for each enabled threading option (apparently
the install fails if a single call has both options enabled for mpi)
 2016-01-15 18:07:41 -08:00
Adam J. Stewart
eac795abc3 Add verbs and psm variants 2016-01-15 15:09:36 -06:00
Ben Boeckel
4f60948bff py-matplotlib: depend on freetype 
Probably a missed dependency, but appeared on OS X.
 2016-01-15 16:04:49 -05:00
Ben Boeckel
c3bf1a7741 py-numpy: make blas/lapack optional dependencies 
OS X is having trouble building these libraries, so make them optional
dependencies.
 2016-01-15 16:03:51 -05:00
Ben Boeckel
f6680a0051 qhull: apply patch to work with libc++'s standard library 
Only seen on OS X with clang right now.
 2016-01-15 16:02:35 -05:00
Nicola Varini
7fc308ed26 Update to version 5.3 2016-01-15 17:04:25 +01:00
Nicola Varini
7d0256c9fb Quantum-ESPRESSO package 2016-01-15 10:27:38 +01:00
Erik Schnetter
0a993cd9d7 New package GNU tar 2016-01-14 20:44:51 -05:00
Erik Schnetter
3e703cc281 LLVM depends on cmake, and does not depend on isl 
Add cmake requirement.

Remove gmp and isl requirements. Using an external isl leads to a build failure for me on a fairly standard Fedora Linux workstation. The Spack package file says that isl is required for polly, however, the polly documentation states that as of LLVM 3.7, polly includes isl, and has no external dependencies any more.
 2016-01-14 17:52:28 -05:00
Erik Schnetter
aa3897a880 Install ncurses properly 
Currently, ncurses's include files are installed into two separate subdirectories, "install/ncurses" and "install/ncursesw". The second level of subdirectories ("ncurses" and "ncursesw") are non-standard. I checked several systems to confirm this, and ncurses examples on the web also simply contain "#include <ncurses.h>" instead of "#include <ncurses/ncurses.h>", which would be necessary to use the currently installed ncurses packages. For example, this also breaks llvm, which uses ncurses, but does not expect the second level of subdirectories.

I am now using the option "--enable-overwrite", which installs the header files directly in to ".../include". I also enable "widec" support all the time. These options are e.g. similar to the ones used by MacPorts, and I confirm that they make the llvm package build (which didn't build before).
 2016-01-14 17:40:11 -05:00
Todd Gamblin
1268b41570 Merge pull request #293 from trws/llvm-rework 
Llvm rework
 2016-01-14 01:13:39 -08:00
Todd Gamblin
93fdb06d7d Merge pull request #273 from epfl-scitas/packages/R 
R : updated package
 2016-01-14 00:13:27 -08:00
Adam J. Stewart
244ee673d6 Add latest version 2016-01-13 11:44:51 -06:00
Todd Gamblin
a56575a6d2 Merge pull request #324 from eschnett/eschnett/openblas-lapack 
Ensure that OpenBLAS provides a file liblapack.a
 2016-01-13 08:26:26 -08:00
Erik Schnetter
aa1f96c73b New package "cereal" 2016-01-13 11:21:52 -05:00
alalazo
78b57787fa gmsh : added hdf5 support 2016-01-13 12:22:59 +01:00
alalazo
767f286a9f gmsh : added fltk support 2016-01-13 11:26:10 +01:00
alalazo
ffaa4a8922 gmsh : added package with basic compile options 2016-01-13 10:05:19 +01:00
Todd Gamblin
8ead7783ab Merge pull request #345 from eschnett/eschnett/petsc-python-2 
Correct Python version constraint syntax
 2016-01-12 14:26:28 -08:00
Erik Schnetter
8eb16ba02d Merge branch 'develop' into eschnett/petsc-python-2 
# Conflicts:
#	var/spack/packages/petsc/package.py
 2016-01-12 14:36:37 -05:00
Adam J. Stewart
a6f2cc9cbf Add required dependency version 2016-01-12 13:28:48 -06:00
Adam J. Stewart
180c673c78 Add different URL for older source code 2016-01-12 13:21:53 -06:00
Adam J. Stewart
6985d2c914 Add url_for_version function to calculate url 2016-01-12 13:00:05 -06:00
Adam J. Stewart
5520ce3c4a Removed unnecessary URLs 2016-01-12 12:19:03 -06:00
Adam J. Stewart
9b3e0255f4 Add HDF package 2016-01-12 11:55:42 -06:00
Todd Gamblin
4ac530d289 Merge pull request #314 from eschnett/eschnett/libpciaccess-configure 
Build libpciaccess from tarball
 2016-01-12 09:14:19 -08:00
Todd Gamblin
5bdc6e53e5 Merge pull request #323 from eschnett/eschnett/openssl-apps 
Ensure the APPS environment variable is not set when building OpenSSL
 2016-01-12 09:13:50 -08:00
Todd Gamblin
dd0aa90aa1 Merge pull request #328 from eschnett/eschnett/lua-readline 
Resolve readline/ncurses dependency when building Lua
 2016-01-12 09:13:21 -08:00
Todd Gamblin
1a3c0063a5 Merge pull request #329 from epfl-scitas/packages/cmake 
cmake : added variant that activates the build of the ncurses gui
 2016-01-12 09:12:06 -08:00
alalazo
1f78b9c7af parmetis : removed leftover import statement 2016-01-12 16:59:47 +01:00
alalazo
da8b08b5fe parmetis : used spack install method instead of shutil.copy 2016-01-12 14:55:29 +01:00
alalazo
30da85c3d8 metis : added variant specified in BUILD.txt. Fixed wrong dependency on MPI. 
parmetis : added variants as in metis
 2016-01-12 14:25:06 +01:00
Peter Scheibel
50727527bc This commit makes the following changes: 
There are two sensible defaults for building boost libraries: build all of them
or build none of them. Previously the Spack boost package took the first
approach. This commit changes to building no libraries by default. The user can
specify which libraries they need using variants (e.g. +iostreams to compile the
boost iostreams library). If no libraries are built then a header-only install
is performed (no compilation, just copy header files to prefix). The consequence
of this change is that packages which specify a dependency on boost may now fail
(until they are updated to specify exactly which boost libraries they need
compiled).

The user may now specify whether to build shared libraries (static libraries are
always built) and whether to build libraries with/out multi-threading support
(default is to only build with multi-threading support).

The executable on the user-config.jam toolset line is set to Spack's cc script.
Before, without this, the desired toolset was used but Spack deferred to the
boost build system to choose the compiler version.

bzip2 and zlib are always specified as dependencies when iostreams is built
(before this could be controlled with the +compression variant).
 2016-01-11 15:51:59 -08:00
Erik Schnetter
36d74d2a97 Correct Python version constraint syntax 2016-01-11 17:39:39 -05:00
Erik Schnetter
a5588e4bb7 Download package version with a configure script 
This avoids having to use autoconf, which requires many m4 scripts that are not always available.
 2016-01-11 17:37:13 -05:00
Erik Schnetter
8af8c10559 Avoid key error when env var is unset 2016-01-11 17:33:44 -05:00
Todd Gamblin
85220dd77d Revert "Require Python for PETSc" 2016-01-11 13:57:21 -08:00
Todd Gamblin
01f2c38ee7 Merge pull request #320 from eschnett/eschnett/parmetis-cmake 
parmetis requires cmake @2.8:
 2016-01-11 13:56:28 -08:00