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Author SHA1 Message Date
Glenn Johnson
37a4c0ff59
r-prettydoc: fix dependency (#27791) 
The markdown dependency is `r-rmarkdown` rather than `r-markdown`.
 2021-12-06 17:13:44 +01:00
Glenn Johnson
30007f7897
r-affy: set r version constraint (#27792) 2021-12-06 17:00:03 +01:00
Glenn Johnson
caba5c4692
Remove the autotools resources (#27793) 
This essentially reverts #18917 as it seems to no longer be necessary
due to recent autotools changes in core spack.
 2021-12-06 16:59:25 +01:00
Wouter Deconinck
bc3a3d9249
opencascade: add v7.6.0 (#27799) 2021-12-06 16:44:19 +01:00
Glenn Johnson
599b8c3533
suite-sparse: Add CXSparse and SPQR to targets (#27804) 2021-12-06 16:40:07 +01:00
Michael Kuhn
e6432d2380
glib: add 2.70.2 (#27812) 2021-12-06 16:34:26 +01:00
Glenn Johnson
39ebf9c5a7
Set preferred version of vtk to 9.0.3 (#27817) 
There is a library symbol issue with libioss and python with version
9.1.0 so set preferred version to 9.0.3.
 2021-12-06 16:28:35 +01:00
Wouter Deconinck
a332c26780
acts: use variants['cuda_arch'] only when +cuda (#27813) 
Since #27185, the cuda_arch variant values are conditional on +cuda. This means that for -cuda specs, the installation fails with:
```
==> acts: Executing phase: 'cmake'
==> Error: KeyError: 'cuda_arch'

/home/wdconinc/git/spack/var/spack/repos/builtin/packages/acts/package.py:222, in cmake_args:
        219        log_failure_threshold = spec.variants['log_failure_threshold'].value
        220        args.append("-DACTS_LOG_FAILURE_THRESHOLD={0}".format(log_failure_threshold))
        221
  >>    222        cuda_arch = spec.variants['cuda_arch'].value
        223        if cuda_arch != 'none':
        224            args.append('-DCUDA_FLAGS=-arch=sm_{0}'.format(cuda_arch[0]))
        225
```
 2021-12-06 16:25:27 +01:00
Glenn Johnson
a8a226b748
bohrium: missing dependencies (#27807) 2021-12-06 16:23:25 +01:00
Wouter Deconinck
9b1b38d2de
librsvg,libcroco: add doc variant to avoid unsolvable constraints due to gtkplus (#27790) 
* [libcroco] add variant doc, depends_on gtk-doc when +doc
* [librsvg] add variant doc, depends_on gtk-doc when +doc
 2021-12-06 14:08:22 +01:00
Wouter Deconinck
2bb075c850
rivet: hepmc=3: Fix prefix of --with-hepmc3 (#27814) 2021-12-06 10:42:54 +01:00
Glenn Johnson
235edd0742
new package: py-tensorflow-datasets (#27746) 
* new package: py-tensorflow-datasets

- includes new dependency package: py-tensorflow-metadata

* Update var/spack/repos/builtin/packages/py-tensorflow-datasets/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-tensorflow-metadata/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-12-05 12:06:43 -06:00
Glenn Johnson
252cd48b9c
py-astropy: set version constraint on cfitsio (#27805) 2021-12-05 12:06:09 -06:00
Ben Bergen
c2def5c2f4
cgdb: add depends_on('gdb', type='run') (#27753) 
* Added gdb Dependency

When using spack to install cgdb, a spack-built gdb is necessary to
avoid dynamic link errors.

- Added maintainer: tuxfan
- Set preferred to 'master' (best version for spack currently)

* Update: The gdb dependency added by this PR is for runtime

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
 2021-12-05 08:02:23 -07:00
Manuela Kuhn
25a9888102
r-v8: add 3.6.0 (#27714) 
* r-v8: add 3.6.0

* Add conflict and deprecate version 3.4.0
 2021-12-05 00:56:47 -06:00
Manuela Kuhn
1eec99ce1d
py-imagesize: add 1.3.0 (#27787) 2021-12-03 21:05:05 -07:00
Manuela Kuhn
c0dab7617f
py-jeepney: add 0.7.1 (#27786) 2021-12-03 20:16:56 -07:00
Chung ShinYee
041973d1d5
julia: update versions and add znver3 to Julia's CPU target (#27770) 
* julia: new versions.

* julia: Support AMD Milan CPU znver3.
 2021-12-03 18:31:47 -07:00
kwryankrattiger
203ccdd976
LLVM: Revert build_llvm_dylib to llvm_dylib (#27761) 2021-12-03 23:47:05 +01:00
Tamara Dahlgren
6f9dc1c926
berkeley-db: Add minimal external detection (#27752) 2021-12-03 23:42:45 +01:00
Manuela Kuhn
324e046f06
r-tictoc: add 1.0.1 (#27715) 2021-12-03 16:14:29 -06:00
Asher Mancinelli
21d1e03e37
ExaGO: add new versions (#27768) 2021-12-03 13:59:16 -08:00
Mark W. Krentel
34c1d196a4
hpctoolkit: add support for smoke tests (#27783) 
This adds support in spack for both build/install tests (spack install
--run-tests) and post-install smoke tests (spack test run).

Hpctoolkit itself only recently added tests, so for now, this only
applies to branch master.
 2021-12-03 12:52:34 -08:00
Jen Herting
bd2b5cc7aa
[libzmq] added version 4.3.4 (#27780) 2021-12-03 13:44:04 -07:00
Simo Tuomisto
cfb8d6f8ac
New package: mujoco (#27656) 2021-12-03 11:40:09 -08:00
Weiqun Zhang
0a656de60b
amrex: add new release 21.12 (#27781) 2021-12-03 11:00:14 -08:00
Hans Pabst
23bd0f3178
LIBXSMM 1.17 (#27775) 2021-12-03 10:48:40 -08:00
Hans Pabst
0e7220b2f2
Fixed typo (NAMD). (#27774) 2021-12-03 10:40:34 -08:00
Bernhard Kaindl
53eb24af9b
singularity, singularityce: Add 3.8.5 and ce-3.9.1 (#27778) 2021-12-03 11:23:08 -07:00
Richarda Butler
86b17193de
Parallel-netcdf: Update Spack test dir (#27232) 
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2021-12-03 10:03:14 -08:00
Filippo Spiga
96a50db344
CUDA: add v11.5.1 (#27689) 2021-12-03 06:13:51 -07:00
Ethan Stam
4c922ec572
ParaView: add dependencies needed in paraview@master (#27745) 
* The proj and nlohmann-json packages are needed in paraview@master
* ParaView: bump master subdir version to 5.10
 2021-12-02 17:18:23 -08:00
Terry Cojean
b80b085575
Ginkgo package: add oneAPI support (#26868) 
To use this, you can "spack install intel-oneapi-compilers" and then
"spack compiler add" the new compiler. You would need to install with
"spack install ginkgo+oneapi%dpcpp"
 2021-12-02 17:13:25 -08:00
Michael Kuhn
fbd67feead
nss: add 3.73 (#27767) 2021-12-03 00:55:57 +01:00
Peter Scheibel
edb971a10e
Support packages which need to explicitly refer to dpcpp by name (#27168) 
* Hack to support packages which need to explicitly refer to dpcpp by name
* cc script needs to know about dpcpp
 2021-12-02 15:49:20 -08:00
Michael Kuhn
693a15ea00
nspr: add 4.32 (#27766) 2021-12-03 00:36:50 +01:00
Bernhard Kaindl
4d1a6cd362
libseccomp package: add version 2.5.3 (#27756) 
- Use .tar.gz archive
- Update 2.3.3 to use .tar.gz archive (and update checksum)
- autoreconf dependency is no-longer required
- The new version depends on gperf
 2021-12-02 14:52:23 -08:00
Bernhard Kaindl
9e1e7fa1d7
lvm2 package: add version 2.03.14 (#27760) 2021-12-02 14:37:59 -08:00
Ben Darwin
07ab4623e6
New package: f3d (add version 1.1.1) (#27755) 2021-12-02 14:35:55 -08:00
Jen Herting
66c5199362
New package: py-fire (#27731) 
* dependency for stylegan2

* fixed copyright

* [py-fire]

- fixed some formatting
- url -> pypi

* [py-fire] removed extra https://

* [py-fire]

- removed python version restriction
- enum34 -> py-enum34

* [py-fire] removed .999

Co-authored-by: Sid Pendelberry <sid@rit.edu>
 2021-12-02 14:58:25 -06:00
Jen Herting
ca32b08825
New package: py-vector-quantize-pytorch (#27759) 
* [py-vector-quantize-pytorch] New package

* [py-vector-quantize-pytorch] flake8

* [py-vector-quantize-pytorch] removed unnecessary dependency

Co-authored-by: Sid Pendelberry <sid@rit.edu>
 2021-12-02 14:53:49 -06:00
Ye Luo
1cdb764422
QMCPACK: fix use of MPI wrappers (#27744) 2021-12-01 18:39:06 -08:00
Tiziano Müller
d0beab8012
elpa package: add version 2021.05.002_bugfix (#27748) 
* elpa: filter _bugfix in version for include dir
* libxc: add version 5.1.7
 2021-12-01 18:29:23 -08:00
Bernhard Kaindl
04519d261d
New package: goshimmer (#27339) 2021-12-01 17:05:30 -08:00
Axel Huebl
e590ec6f3f
Add: openPMD-viewer (#27516) 
* Add: openPMD-viewer

Add the `py-openpmd-viewer` package.

* openPMD-viewer: Improve Variant Control

* openPMD-viewer: Update to Source from Pip/PyPA

https://spack.readthedocs.io/en/latest/build_systems/pythonpackage.html#pypi-vs-github

* Fix style: comment

* openPMD-viewer: fix requirements

add reviewer feedback
 2021-12-01 16:19:54 -07:00
Tiziano Müller
08b00f8804
cp2k: fix build issues without cuda, and with elpa on openSUSE (#27738) 2021-12-01 17:00:01 -06:00
Vanessasaurus
326acea29d
py-tern: new package (#27599) 
Signed-off-by: vsoch <vsoch@users.noreply.github.com>
Co-authored-by: vsoch <vsoch@users.noreply.github.com>
 2021-12-01 14:41:05 -07:00
Jen Herting
97126cac4b
New package: py-yq (#27729) 
* pypi build of yq

* [py-yq]

- removed duplicate py-yaml dependency
- fixed py-yaml version number

* [py-yq] fix py-xmltodict version range

* [py-yq] self assign maintainer

* [py-yq] setuptools is runtime dependency

Co-authored-by: Sid Pendelberry <sid@rit.edu>
 2021-12-01 13:25:24 -08:00
Jen Herting
2ddc522864
New package: py-retry (#27730) 
* package dependency

* [py-retry]

- added homepage
- removed unnecessary depends_on

* [py-retry] added dependencies back

* [py-retry] removed .999

Co-authored-by: Sid Pendelberry <sid@rit.edu>
 2021-12-01 14:14:55 -07:00
Joseph Wang
d7b21fc40b
madgraph5amc package: use Spack compiler wrapper (#27523) 
This fix allows madgraph5amc to build with Clang.
 2021-12-01 12:18:07 -08:00