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Author SHA1 Message Date
darmac
43712b4982 add new package : rabbitmq (#14167) 2019-12-14 12:21:09 -06:00
darmac
2f4521d418 add new package : zookeeper (#14170) 2019-12-14 12:19:40 -06:00
darmac
f40520c6bf add new package : bind9 (#14172) 2019-12-14 12:16:39 -06:00
darmac
33028c8955 add new package : rt-tests (#14174) 2019-12-14 12:12:01 -06:00
Andras Wacha
f757b6f4e5 Patch: explicitly use xbitmaps include dir in the automake package (#14128) 
* Patch: explicitly use xbitmaps include dir in the automake package

* Added dependencies required for autoreconf: libtool, autoconf, automake, m4
 2019-12-14 10:54:27 -06:00
darmac
7e668b1153 add new package : cassandra (#14144) 
* add new package : cassandra

* make stable version as a preferred one
 2019-12-13 22:21:18 -06:00
Adam J. Stewart
43e9fe95ea
Add latest version of jq (#14134) 2019-12-13 15:44:09 -06:00
Matthieu Dorier
f589f69a6c FIX: Making berkeley-db package fetch from correct links (#14147) 
* making berkeley-db package fetch from oracle website

* removed blank space

* making flake8 happy

* fixing typos and order of versions
 2019-12-13 15:19:59 -06:00
Dan Lipsa
0167ceb104 Add shared option to ParaView. (#14131) 
* Add shared option to ParaView.

* Use append for one attribute
 2019-12-13 15:19:31 -06:00
Adam J. Stewart
83baf35246
Add new aws-parallelcluster package (#14139) 2019-12-13 12:55:15 -06:00
Adam J. Stewart
268914e7a2
Add latest version of py-tabulate (#14138) 2019-12-13 12:54:59 -06:00
Adam J. Stewart
988b377382
Add latest version of py-ipaddress (#14137) 2019-12-13 12:54:42 -06:00
Adam J. Stewart
da501564cb
Add latest version of py-botocore (#14136) 2019-12-13 12:54:23 -06:00
Adam J. Stewart
5db615feca
Add latest version of py-boto3 (#14135) 2019-12-13 12:54:05 -06:00
Adam J. Stewart
2e19a9343b
Add latest version of oniguruma (#14133) 2019-12-13 12:53:44 -06:00
Seth R. Johnson
c659408368 Update CMake to version 3.16 (#14152) 2019-12-13 12:53:19 -06:00
noguchi-k
3e5c926a95 gmodel: fix error (#14140) 2019-12-13 12:53:03 -06:00
darmac
481a920fe8 add new package : activemq (#14142) 2019-12-13 12:51:59 -06:00
darmac
3344bb0a96 add new package : alluxio (#14143) 2019-12-13 12:51:30 -06:00
darmac
03203a86b4 fix libev url (#14066) 
* fix libev url

* remove list_url in libev
 2019-12-12 22:58:33 -06:00
Sinan
0d7b9de3be compile python with sqlite loadable extensions (#14132) 2019-12-12 22:58:16 -06:00
t-karatsu
ddfca1b2f2 cmake: Fix checksum of 4075.patch (#14125) 2019-12-12 13:57:23 -05:00
iarspider
d98b433a3c Fix py-jupyter-client version ranges (#14126) 2019-12-12 11:31:47 -06:00
Justin S
c2f45fb4da charmpp: fix build failing from broken hardlink (#13922) 
* charmpp: fix build failing from broken hardlink

* charmpp: use setup_dependent_build_environment
 2019-12-11 20:20:05 -06:00
Glenn Johnson
fec3a852c7 Fix replacement of embedded 'gcc' in augustus (#14116) 
PR #13975 added makefile filtering to replace gcc/g++ with the spack
compiler. This conflicts with other filtering that is done in the package to
add paths for dependencies. The text of the dependency paths might
have 'gcc' in the path name, depending on the install_path_scheme, and
that was being replaced by the new compiler filters. That would mangle
the path to the dependecy resulting in a failed build.

This PR moves the compiler filters to be before the other filters to
make sure that the compiler is set before the dependency paths.
 2019-12-11 20:19:27 -06:00
iarspider
695c09a8b7 Add missing dependency on setuptools to py-subprocess32 (#14074) 
* Add missing dependency on setuptools to py-subprocess32

* Update package.py

* Update var/spack/repos/builtin/packages/py-subprocess32/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py
 2019-12-11 20:18:39 -06:00
Brian Van Essen
53f73e280a Bugfix for bad hydrogen tags (#14119) 2019-12-11 20:17:10 -06:00
Adam J. Stewart
1f9d37c346
TensorFlow: must specify CUDA compute capabilities (#14118) 
* TensorFlow: must specify CUDA compute capabilities

* Correctly restrict cuda_arch version ranges
 2019-12-11 20:16:52 -06:00
Adam J. Stewart
7ec1917d9b
Add try-except for Python installation (#14122) 2019-12-11 20:16:33 -06:00
Adam J. Stewart
47615566ea
Fix JDK 8 download URLs (#14120) 2019-12-11 20:16:16 -06:00
iarspider
aac45154fd Fix py-ppft source extension (#14077) 
* Fix py-ppft source extension

* PEP-8 fix

* Update package.py

* Apply suggestions from code review

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-12-11 14:05:14 -06:00
iarspider
d07e988fbc Fix py-pox build recipe (#14078) 
* Fix py-pox build recipe

* PEP-8 fix

* Update package.py

* Apply suggestions from code review

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-12-11 14:04:50 -06:00
iarspider
a254f7011e Fix py-notebook for Python2 (#14079) 
* Fix py-notebook for Python2

* PEP-8 fix

* Update package.py

* Update package.py

* Syntax fix

* Update var/spack/repos/builtin/packages/py-notebook/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-12-11 14:04:33 -06:00
iarspider
34adebc7cf Fix py-hypothesis (#14084) 
* Fix py-hypothesis

* Update package.py

* Update package.py

* Update package.py
 2019-12-11 14:04:18 -06:00
Dan Lipsa
6f7a58b142 Fix constexpr for llvm 9.0 (#14095) 2019-12-11 14:03:57 -06:00
Adam J. Stewart
69a91b5b6b
Add grass 7.8.2 (#14115) 2019-12-11 14:00:38 -06:00
Brian Van Essen
ee0b9bfa5b Added new versions of hydrogen (#14103) 2019-12-11 12:23:25 -06:00
Michael Kuhn
927f496306 doxygen: Fix libiconv checks (#14106) 
PR #10589 introduced a libiconv dependency to doxygen. This causes
problems on Linux systems, since the iconv symbols are included in libc,
which causes CMake to use the external header but not the external
library. Work around this by always using the external libiconv.
 2019-12-11 12:22:59 -06:00
Glenn Johnson
f2979da2af Build xed CLI for the intel-xed package (#14114) 
The xed CLI is handy, and can be gotten by building the examples in the
intel-xed package. This PR builds the examples and installs the xed CLI.
It would also be possible to install more of the example binaries if
someone thinks they are useful.
 2019-12-11 12:13:27 -06:00
Mark Olesen
77482e102a openfoam relocated to https://develop.openfoam.com/Development/openfoam.git (#14101) 2019-12-11 12:12:30 -06:00
noguchi-k
b0a7c8487d diamond: fix narrowing error. (#14064) 
* diamond: fix narrowing error

* diamond: fix patch

* diamond: add link to the patch source
 2019-12-11 12:07:21 -06:00
iarspider
d4326038b9 Fix py-pkgconfig recipe (#14081) 
* Fix py-pkgconfig recipe

* Update package.py

* Proper fix for py-pkgconfig
 2019-12-11 12:06:18 -06:00
iarspider
bb3bae4bae Fix py-pathos source file extension (#14080) 
* Fix py-pathos source file extension

* PEP-8 fix

* Add version 0.2.3 to spack

* Update package.py
 2019-12-11 12:04:45 -06:00
iarspider
ec3d979899 Fix py-llvmlite (#14083) 
* Fix py-llvmlite

* Update package.py

* Add llvmlite 0.29

* Update package.py
 2019-12-11 12:03:48 -06:00
iarspider
5c2afd0535 Fix py-dill source archive extension (#14085) 
* Fix py-dill source archive extension

* Add py-dill 0.2.7, remove extra str()

* Update package.py

* Update package.py

* Update package.py
 2019-12-11 12:03:28 -06:00
Howard Pritchard
e7a03d07b6 llvm: fix for building llvm using Cray PE (#12734) 
Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
 2019-12-11 11:51:44 -06:00
iarspider
3cd6ca02d2 Fix json-c package (#14087) 
* Fix json-c package

* Fix PEP-8

* Update package.py

* Update package.py
 2019-12-10 17:34:50 -06:00
iarspider
ec060f3d9c Fix libgeotiff dependency of gdal (#14089) 
* Fix libgeotiff dependency of gdal

* Update package.py

* Fix typo

* Update package.py
 2019-12-10 17:34:35 -06:00
Justin S
2c31776007 openmolcas: new package at 19.11 (#14099) 
* openmolcas: new package at 19.11

* openmolcas: fill description

* openmolcas: rewrite using CMakePackage

* openmolcas: add py-six dep

* openmolcas: use setup_build_environment, setup_run_environment

* openmolcas: remove redundant cmake dep

* openmolcas: explicitly cast Executable to str
 2019-12-10 17:33:52 -06:00
iarspider
5b3b522861 Alternative locations for tclConfig and tkConfig (#14071) 
* Alternative locations for tclConfig and tkConfig

* Fix PEP-8
 2019-12-10 15:18:19 -06:00
Eric Berquist
33f603734d Update tmux to 3.0a (#14096) 
* Add tmux@2.9 and tmux@3.0a

* Fix checksums
 2019-12-10 15:06:21 -06:00
Christoph Junghans
34f0195de8 gromacs-2018.8: fix checksum (#14069) 2019-12-10 12:33:41 -06:00
iarspider
fb6d29adfa ROOT: +http variant doesn't require any external dependency (#14072) 2019-12-10 12:29:11 -06:00
iarspider
f96216cf40 Fix py-pyasn1 version for py-pyasn1-modules (#14076) 2019-12-10 12:26:16 -06:00
iarspider
122264609e Fix for DD4Hep build: can't find boost (#14091) 2019-12-10 11:58:52 -06:00
iarspider
dd67868ef6 More variants for cairo (#14092) 2019-12-10 11:58:37 -06:00
Simo Tuomisto
9e8204d075 openfoam-org: Adding openfoam-org versions 6 and 7. (#12859) 
This commit adds openfoam-org versions 6 and 7. It also adding new variant for metis and fixes openfoam-org's old environment modification functions.
 2019-12-10 09:42:01 -06:00
Mark W. Krentel
c627e5a6fc intel-tbb: fix and cleanup patch version ranges (#14053) 
Recent commit e9ee9eaf (#13989) fixed testing version ranges inside
patch when clauses.  Previously, it was necessary to write all revs
individually for packages with multiple length version numbers (2019
and 2019.1).

This fixes the build for the old 2017.* versions.
 2019-12-09 17:11:47 -06:00
Adam J. Stewart
23faffa2d0
TensorFlow: don't override HOME env var (#14054) 2019-12-09 11:22:57 -06:00
Matt Larsen
919a5421b7 fix incorrect gpu arch map for vtk-m package (#14057) 2019-12-09 11:18:51 -06:00
Adam J. Stewart
aa8d5d2e8c
cbtf-krell: fix missing dependencies (#14021) 2019-12-08 15:51:04 -06:00
Adam J. Stewart
2266aab5c5
Add new r-condop package (#14050) 2019-12-08 09:29:51 -06:00
Adam J. Stewart
c72568d01b
Add new r-earth package (#14049) 2019-12-08 09:06:53 -06:00
Adam J. Stewart
bf9661f18a
Add new r-plotmo package (#14048) 2019-12-08 09:06:37 -06:00
Adam J. Stewart
0c1599403d
Add new r-teachingdemos package (#14047) 2019-12-08 09:06:20 -06:00
Adam J. Stewart
cb258daf88
Add new r-graphlayouts package (#14046) 2019-12-08 09:06:04 -06:00
Adam J. Stewart
4593b7b693
Add new r-tidygraph package (#14045) 2019-12-08 09:05:46 -06:00
Adam J. Stewart
3547776921
py-torch: comment out non-existing deps (#14044) 2019-12-08 09:05:21 -06:00
Adam J. Stewart
aca67581e8
Add new py-requests-mock package (#14043) 2019-12-08 09:05:04 -06:00
Adam J. Stewart
99d2bcf64e
py-luigi: fix test dependencies (#14042) 2019-12-08 09:04:45 -06:00
Christoph Junghans
16a61d1422 elpa: port to microarch (#13655) 
* elpa: port to microarch

* flake8

* Update package.py

* Update var/spack/repos/builtin/packages/elpa/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-12-08 09:03:59 -06:00
Adam J. Stewart
4e24c4ca5f
Add new py-pytest-mypy package (#14041) 2019-12-08 00:10:46 -06:00
Adam J. Stewart
4fb03f7222
Add new py-sphinxcontrib-issuetracker package (#14040) 2019-12-08 00:10:32 -06:00
Adam J. Stewart
8d21e39f00
py-python-htmlgen -> py-htmlgen (#14039) 2019-12-08 00:10:17 -06:00
Adam J. Stewart
fdc3176920
Add new py-asserts package (#14038) 2019-12-08 00:10:02 -06:00
Adam J. Stewart
4f7c28e9cd
py-brian2: py-nosetests -> py-nose (#14037) 2019-12-07 23:21:27 -06:00
Adam J. Stewart
ab250a2e3a
polymake: fix dependency name (#14034) 2019-12-07 22:14:48 -06:00
Adam J. Stewart
0a1d2a45f4
Add py-jupyter package (#14035) 2019-12-07 22:14:34 -06:00
Adam J. Stewart
db1026cb62
Add new py-wxmplot package (#14036) 2019-12-07 22:14:20 -06:00
Adam J. Stewart
891ccbea3f
Add new py-stestr package (#14029) 2019-12-07 15:40:08 -06:00
Adam J. Stewart
c1826d9d32
Add new py-testrepository package (#14030) 2019-12-07 15:39:53 -06:00
Adam J. Stewart
129e548ac0
Add new py-testresources package (#14031) 2019-12-07 15:39:38 -06:00
Adam J. Stewart
71ec2db3a9
Add new py-testscenarios package (#14032) 2019-12-07 15:39:24 -06:00
Adam J. Stewart
e77a557ca1
Add new py-testtools package (#14033) 2019-12-07 15:39:11 -06:00
Adam J. Stewart
cec03c2db4
Add new py-python-subunit package (#14028) 2019-12-07 15:38:56 -06:00
Quinn
1a662f428e Add New package feh and supporting packages (#14013) 
* Adding libid3tag package for supporting feh

* Adding libexif package for supporting feh

* Adding imlib2 package for supporting feh

* Adding the feh package

* Rewording the cleanup function for libid3tag

* Fixing some flake8 issues for imlib2 and libid3tag

* Adding sources for the patches and swapping rm for os.remove

* Flake8 fixes

* swapping md5sums for sha256sums
 2019-12-07 15:38:41 -06:00
Adam J. Stewart
a9f6caf863
Add new py-hacking package (#14027) 2019-12-07 14:04:06 -06:00
Adam J. Stewart
c88b95bd28
Add new py-fixtures package (#14026) 2019-12-07 14:03:41 -06:00
Adam J. Stewart
e78865b3ab
Add new py-extras package (#14025) 2019-12-07 14:03:06 -06:00
Adam J. Stewart
b6a6f28482
Add py-tox package (#14024) 2019-12-07 14:02:39 -06:00
Adam J. Stewart
9ece63242a
Add latest version of py-importlib-metadata (#14023) 2019-12-07 14:02:16 -06:00
Adam J. Stewart
31b45d40d9
flann: fix missing dependencies (#14022) 2019-12-07 14:01:39 -06:00
Christoph Junghans
969bc948b5 votca*: add v1.6_rc1 (#14017) 
* votca*: add v1.6_rc1

* votca: prefer v1.5.1
 2019-12-07 10:04:15 -06:00
Axel Huebl
15bb5da99f openPMD-api: 0.10.1 (#14018) 
Add the latest release of openPMD-api.
 2019-12-07 10:02:53 -06:00
Axel Huebl
d705e96a63
Spec Header Dirs: Only first include/ (#13991) 
* CUDA HeaderList: Unit Test

* Spec Header Dirs: Only first include/

Avoid matching recurringly nested include paths that usually
refer to internally shipped libraries in packages.
Example in CUDA Toolkit, shipping a libc++ fork internally
with libcu++ since 10.2.89:
`<prefix>/include/cuda/some/more/details/include/` or
`<prefix>/include/cuda/std/detail/libcxx/include`

regex: non-greedy first match of include

Co-Authored-By: Massimiliano Culpo <massimiliano.culpo@gmail.com>

* CUDA: Re-Enable 10.2.89 as Default
 2019-12-06 23:47:03 -08:00
Mark W. Krentel
9d9737f765 ibm-java: add version 8.0.6.0 (#14003) 
* ibm-java: add version 8.0.6.0

Add version 8.0.6.0 and remove 8.0.5.30.  IBM is fairly aggressive
about removing old versions, and 8.0.5.30 is no longer available from
their download site.

* Restore version 8.0.5.30, although it is no longer available for
download from IBM.
 2019-12-06 18:11:24 -06:00
Francesco Di Natale
01d35a4f3b Packages/py-maestrowf (#14010) 
* Addition of repository branches to maestrowf.

* Addition of 1.1.5dev pre-release.

* Correction of a merge conflict.

* Addition of Maestro release 1.1.5

* Addition of Maestro release 1.1.6 (removal of 1.1.5)

* Sets 1.1.6 to the preferred version.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Tweak to the url to point to latest.
 2019-12-06 18:10:58 -06:00
Adam J. Stewart
66a169e2a5
Add py-parameterized package (#14016) 2019-12-06 18:09:00 -06:00
Adam J. Stewart
350a5422ed
Update py-theano dependencies (#14015) 2019-12-06 18:08:34 -06:00
nicolas le goff
d173ec6a35 mesquite: fix build of the no mpi variant. (#14012) 
* mesquite: fix build of the no mpi variant.

* mesquite: added the --without-mpi option to configure.
 2019-12-06 18:08:13 -06:00