Abhinav Bhatele
a9a29d207d
add versions 2.2rc2 and 2.1 to the mvapich2 package ( #1630 )
2016-08-28 20:18:57 -07:00
Erik Schnetter
e119c32a9c
Hot-fix for qthreads ( #1632 )
...
The download tarball for qthreads vanished. Install it from a git branch instead as temporary work-around.
2016-08-28 20:18:24 -07:00
Jeffrey Salmond
82808f944a
New package: opencoarrays ( #1633 )
...
* opencoarrays: new package
* opencoarrays: remove tests from install due to (unimportant) failures in some configurations
* opencoarrays: fix flake8 errors
2016-08-28 20:17:22 -07:00
Todd Gamblin
ed365614f4
Add git-lfs package.
2016-08-28 19:27:59 -07:00
Robert D. French
974749aaf6
Provide mpi-less variant for nco ( #1643 )
2016-08-28 19:15:15 -07:00
Erik Schnetter
6acfcd82b1
Update Julia to 0.5 release branch; install some Julia package as well ( #1637 )
...
* Update Julia to 0.5 release branch; install some Julia package as well
* Add comments, correct flake8 error
* Correct flake8 error
2016-08-28 17:46:10 -07:00
Robert D. French
079d063c6d
Variant for building cdo without mpi ( #1638 )
2016-08-28 17:43:54 -07:00
Erik Schnetter
db7c3d2de6
New package for the Mercurial (hg) version control system ( #1644 )
...
* New package "mercurial"
* Disable self-checks
The self-checks require subversion, which we don't want to require.
2016-08-28 17:31:15 -07:00
becker33
e73a1a4ec3
Merge pull request #1558 from mcfadden8/mmcfadden-features/gcc-pic-libraries
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Added variant to gcc package to install PIC versions of libgfortran and libstdc++
2016-08-25 16:00:00 -07:00
Gregory Lee
77c24d4127
Merge pull request #1379 from LLNL/features/graphlib3
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added stat 3.0 beta and added pygtk and dependent packages
2016-08-25 09:14:36 -07:00
Todd Gamblin
8170bcfcdd
Merge pull request #1574 from ARCCA/plumed-push
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Update plumed package to include optional modules
2016-08-25 02:45:33 -07:00
Andrew Williams
07e0da24c5
Reverted url to point to tarball rather than git tag
2016-08-25 10:21:56 +01:00
Todd Gamblin
22d2786940
Merge pull request #1580 from davydden/pkg/trilinos_url_fix
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trilinos: switch to github url; fix missing py-numpy dependency
2016-08-25 02:10:05 -07:00
Kelly (KT) Thompson
2ddaabed25
+ Boost: fix recipe for intel compilers.
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This is the same patch provided by PR #550 , but rebased against the current
develop branch. It also passes the flake8 checks.
2016-08-24 15:57:28 -06:00
Todd Gamblin
93cb2db531
Fix build dependency.
2016-08-24 14:10:12 -07:00
Todd Gamblin
a7e568b1d1
Merge branch 'eschnett/sympol' of git://github.com/eschnett/spack into eschnett-eschnett/sympol
2016-08-24 14:05:05 -07:00
Todd Gamblin
19bbe5e421
Merge pull request #1596 from eschnett/eschnett/git-update
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Update git to 2.9.3
2016-08-24 14:03:04 -07:00
Todd Gamblin
86fe78f5f1
Merge pull request #1582 from eschnett/eschnett/gcc-update
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Update gcc to @6.2.0
2016-08-24 14:02:54 -07:00
Adam J. Stewart
eace068788
Use self.run_tests for make check
2016-08-24 15:21:23 -05:00
Adam J. Stewart
70bb1f1707
Reduce number of variants, just use system or no-system libs
2016-08-24 14:39:05 -05:00
Todd Gamblin
e6bac6f208
Merge pull request #1613 from eschnett/eschnett/cmake-update
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Update cmake to 3.6.1
2016-08-24 08:49:33 -07:00
Todd Gamblin
63859bf113
Merge pull request #1575 from davydden/pkg/nwchem
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nwchem: add new package
2016-08-24 08:49:11 -07:00
Todd Gamblin
5cfa74801f
Merge pull request #1565 from adamjstewart/features/fftw
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Add latest version of fftw
2016-08-24 08:49:00 -07:00
Adam J. Stewart
5970b7a00a
Only run tests if explicitly requested
2016-08-24 10:34:20 -05:00
Erik Schnetter
41750ce70d
Update cmake to 3.6.1
2016-08-24 10:45:13 -04:00
Denis Davydov
d154f151aa
py-cclib: new package
2016-08-24 16:26:35 +02:00
Denis Davydov
6d2d5806b5
nwchem: add python module
2016-08-24 13:40:02 +02:00
Denis Davydov
dae219d5c3
nwchem: add another patch
2016-08-23 22:24:16 +02:00
Denis Davydov
459b6eae11
nwchem: add another patch
2016-08-23 22:15:38 +02:00
Erik Schnetter
3194f2001b
Update git to 2.9.3
2016-08-23 15:35:43 -04:00
Erik Schnetter
05f5ba4bf9
Correct flake8 errors
2016-08-23 14:57:29 -04:00
Erik Schnetter
73cae8d9c4
Implement review requests
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- use two empty lines before `class`
- change version numbering scheme for packages, use `url_for_version` to make things work
- specify dependency types
- add comment about temporarily moved download location
- update two packages to newer versions
2016-08-23 13:52:28 -04:00
Denis Davydov
52ae0ea055
trilinos: use version.dashed
2016-08-23 18:48:17 +02:00
David Beckingsale
243d516bf0
Ensure RAJA builds out-of-source
2016-08-23 08:18:26 -07:00
Denis Davydov
6500ac80e4
nwchem: fix lapack detection
2016-08-23 16:46:40 +02:00
Erik Schnetter
a2692e4ef5
sympol: Add package
2016-08-23 10:41:08 -04:00
Erik Schnetter
bdc825fc3c
cddlib: Point download url to a (more reliable) Fedora server
2016-08-23 09:59:56 -04:00
Erik Schnetter
64d3f87e60
Merge branch 'develop' into eschnett/sympol
2016-08-23 09:45:46 -04:00
Denis Davydov
7eb386e55e
nwchem: add patches
2016-08-23 14:52:18 +02:00
Denis Davydov
5da9116c06
nwchem: add scalapack; extra steps for 32bit blas/lapack
2016-08-23 11:55:00 +02:00
Denis Davydov
aca8576de4
trilinos: switch to github url; fix missing py-numpy dependency
2016-08-23 10:50:08 +02:00
Todd Gamblin
e81f3daa28
Merge pull request #1519 from mathstuf/fix-deptypes
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Fix deptypes
2016-08-22 21:40:25 -07:00
Erik Schnetter
7b49166f9b
Update gcc to @6.2.0
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Also add some missing older version.
Update download location to original GNU location.
2016-08-22 20:26:54 -04:00
Denis Davydov
a44beee172
nwchem: add new package
2016-08-23 02:22:44 +02:00
Andrew Williams
65abd279cd
Renamed intelmpi as suggested
2016-08-22 13:44:21 +01:00
Andrew Williams
87d15212eb
Cleaned branch to only include plumed package
2016-08-22 12:30:17 +01:00
Andrew Williams
226d4f04f3
Spelling tweaks and consistent quoting
2016-08-22 12:09:50 +01:00
Andrew Williams
5661afa315
Passed flake8 tests
2016-08-22 12:03:47 +01:00
Andrew Williams
0c8462723b
Found upstream plumed package and modified this one to match
2016-08-22 11:24:03 +01:00
Erik Schnetter
78685addbb
hdf5-blosc: Correct download url
2016-08-21 14:39:54 -04:00
Todd Gamblin
55b1182a4c
Merge pull request #1554 from eschnett/eschnett/hdf5-blosc
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hdf5-blosc: Remove commit id from version specification
2016-08-21 09:44:25 -07:00
Adam J. Stewart
d5903e4612
Flake8
2016-08-19 17:06:34 -05:00
Adam J. Stewart
f0f2c6c486
Add latest version of fftw
2016-08-19 17:05:14 -05:00
Gregory L. Lee
a177b9be8a
updated stat 3.0.0b url
2016-08-19 13:11:21 -07:00
Adam J. Stewart
835b8f246e
py-sphinx requires py-setuptools during runtime
2016-08-19 14:20:31 -05:00
Adam J. Stewart
d7873b5319
Swap lowercase for uppercase in URL
2016-08-19 14:00:50 -05:00
Adam J. Stewart
c1af0d3806
Fix binary conflicts during sphinx activation
2016-08-19 13:54:22 -05:00
Adam J. Stewart
d4e3699510
Add all Sphinx dependencies
2016-08-19 13:44:00 -05:00
Erik Schnetter
466da3afcc
Remove commented-out outdated commit id
2016-08-19 11:52:40 -04:00
Andrew Williams
90e5ccd98c
Cleaned up commented out code in intelmpi package
2016-08-19 15:01:46 +01:00
Andrew Williams
13f636ec68
Added required arguments to get plumed to build with intelmpi
2016-08-19 15:00:21 +01:00
Adam J. Stewart
28537ae7b7
Workaround until variant forwarding works properly
2016-08-18 14:40:21 -05:00
Stephen Herbein
3445a781eb
py-cffi: set LDSHARED env so that rpath is set
...
py-cffi's .so was being built without the rpath being set. distutils
looks at the LDSHARED for which compiler to use to build the final .so.
Since it was not set, distutils fell back to the system provided
compiler. Setting it forces the shared library to be compiled with the
spack compiler (meaning that the rpath is set correctly).
2016-08-18 11:32:19 -07:00
Andrew Williams
6641f42417
Not compiling due to mpi error. Also getting this error from the command line so could be separate issue. Otherwise package definition first draft complete.
2016-08-18 13:19:36 +01:00
Erik Schnetter
296212d78d
hdf5-blosc: Remove commit id from version specification
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The respective commit seems to have vanished.
Now using the master branch without specifying a particular commit.
2016-08-17 16:36:33 -04:00
Adam J. Stewart
4d12c5455a
Fix NetCDF/HDF5 dependency resolution problems
2016-08-17 13:03:56 -05:00
Marty McFadden
f4ec99ecb4
Added +piclibs variant for building PIC versions of libgfortran.a and libstdc++.a
2016-08-17 09:28:21 -07:00
Andrew Williams
b99e945e6d
Added variants and dependencies to plumed but I'm getting an error when trying to resolve mpi to a valid virtual package
2016-08-17 15:43:59 +01:00
becker33
7f57405eac
Merge pull request #1531 from davydden/pkg/ape
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ape: add new package
2016-08-16 10:52:27 -07:00
becker33
e8afbfbce7
Merge pull request #1530 from davydden/pkg/octopus
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octopus: new package
2016-08-16 10:49:41 -07:00
Denis Davydov
5dcc0f7802
ape: add new package
2016-08-16 19:42:32 +02:00
Denis Davydov
9509c10064
octopus: new package
2016-08-16 19:38:38 +02:00
Gregory L. Lee
f182590aae
added pkg-config to build deps of cairo and pixman
2016-08-15 15:17:53 -07:00
Gregory L. Lee
54ef9443d3
fix atk url_for_version
2016-08-15 13:51:54 -07:00
Gregory L. Lee
74dd7a36b5
allow parallel build of stat
2016-08-15 13:51:54 -07:00
Gregory L. Lee
749a4e78c7
gobject-introspection requires glib version 2.48.1
2016-08-15 13:51:54 -07:00
Gregory L. Lee
3df208efc0
stat and dependences package updates
2016-08-15 13:51:53 -07:00
Gregory L. Lee
69931996bf
added dyninst patches for stat+dysect
2016-08-15 13:51:53 -07:00
Gregory L. Lee
f9cb21e886
flake 8 fixes for dyninst
2016-08-15 13:51:53 -07:00
Gregory L. Lee
0074ecd6fa
dyninst package use spec.satisfies instead of @when
2016-08-15 13:51:52 -07:00
Gregory L. Lee
8b94937609
flake 8 fixes for stat and dependents
...
flake 8 fixes for dyninst
flake 8 fixes for dyninst
flake 8 fixes for dyninst
2016-08-15 13:50:39 -07:00
Gregory L. Lee
bd8aab00e4
updated stat and added pygtk and dependent packages
2016-08-15 13:48:58 -07:00
Andrew Williams
27793d97dc
temp commit in current state
2016-08-15 16:16:00 +01:00
Ben Boeckel
9ec1c0e18e
opencv: make py-numpy a nolink dependency
2016-08-15 10:47:00 -04:00
Ben Boeckel
042666eb7e
go: mark git as also being a runtime dependency
2016-08-15 10:46:45 -04:00
Ben Boeckel
826732efec
packages: mark builddeps as type='build'
...
Less sure about these.
2016-08-15 10:46:23 -04:00
Ben Boeckel
eb13cbe9bd
r-datatable: fix nolink dependency
2016-08-15 10:46:05 -04:00
Ben Boeckel
0d17d90b29
packages: mark builddeps as type='build'
2016-08-15 10:45:19 -04:00
Andrew Williams
3edfa390f7
Basic package file for plumed and boilerplate for external intel mpi
2016-08-15 11:19:40 +01:00
Adam J. Stewart
bc64990bc6
Replace python('setup.py' with setup_py(
2016-08-12 12:16:48 -05:00
Todd Gamblin
e1c2ea5123
Merge pull request #1342 from adamjstewart/features/cgns
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Add CGNS package
2016-08-12 09:19:07 -07:00
Adam J. Stewart
d4377c1293
Add Python 3.5 support, latest version of PySide
2016-08-12 09:59:38 -05:00
Adam J. Stewart
633e540a17
Use GitHub URL for ImageMagick
2016-08-11 14:13:33 -05:00
Adam J. Stewart
f147d64527
Rebase messed up flake8
2016-08-11 11:01:57 -05:00
Adam J. Stewart
04cee45ac9
Skip webengine until webkit support is added
2016-08-11 10:33:43 -05:00
Adam J. Stewart
2b0444b6f4
Latest version of pyside still has problems, add deps
2016-08-11 10:33:43 -05:00
Adam J. Stewart
b6fad65f52
Combine patch for all versions
...
Patch doesn't work with @when unless you specify a patch for every
version. When running `spack patch` for a version without a patch,
spack thinks that a patch exists, tries to apply it, but it doesn't
exist. Spack gets very confused.
2016-08-11 10:33:43 -05:00
Adam J. Stewart
1363b05e93
Add test dependencies
2016-08-11 10:33:43 -05:00
Adam J. Stewart
5cc76f7d84
Fix patch for py-pyside 1.2.4
2016-08-11 10:33:43 -05:00
Adam J. Stewart
59ce0c7514
Add patch to build qt 4 with GCC 6
2016-08-11 10:33:42 -05:00
Adam J. Stewart
ddf1879bed
Remove glib dependency, causes problems with PCRE and JavaScript
2016-08-11 10:33:02 -05:00
Adam J. Stewart
90dd26397c
Fix qt patch
2016-08-11 10:33:02 -05:00
Adam J. Stewart
7135299a66
Add latest version of pcre
2016-08-11 10:33:02 -05:00
Adam J. Stewart
ac15d5d619
Add patch for qt gamepad compilation problems
2016-08-11 10:33:01 -05:00
Adam J. Stewart
eac9a5905f
Flake8 and url_for_version changes
2016-08-11 10:33:01 -05:00
Adam J. Stewart
80742b2647
Add latest version of qt
2016-08-11 10:30:31 -05:00
Adam J. Stewart
8a0824df09
Update matplotlibrc filtering for GUI backends
2016-08-11 10:28:35 -05:00
Adam J. Stewart
a388871083
Update ImageMagick to latest version
2016-08-11 10:28:35 -05:00
Adam J. Stewart
2b83ea30e7
Re-add ipython support
2016-08-11 10:28:35 -05:00
Adam J. Stewart
f56de63972
Fix cycler dependencies, update qhull version names
2016-08-11 10:28:35 -05:00
Adam J. Stewart
0b8a3ad8ad
Flake8
2016-08-11 10:28:34 -05:00
Adam J. Stewart
aa6a6df640
Undo changes to GUI framework
2016-08-11 10:28:34 -05:00
Adam J. Stewart
e905ce16c9
Flake8
2016-08-11 10:28:34 -05:00
Adam J. Stewart
11e595089d
Matplotlib overhaul
2016-08-11 10:28:33 -05:00
Adam J. Stewart
b47357d73c
Add patch for Intel compilers
2016-08-11 10:22:47 -05:00
Adam J. Stewart
5fc20487e4
Flake8 and formatting changes
2016-08-11 10:22:47 -05:00
Adam J. Stewart
534e1cbf1b
Some tests don't pass with Intel compilers
2016-08-11 10:20:08 -05:00
Adam J. Stewart
ee5e20dae3
Add dependencies to libarchive and cmake
2016-08-11 10:17:42 -05:00
Adam J. Stewart
58d7704060
Overhaul of compression libraries
2016-08-11 10:15:13 -05:00
Todd Gamblin
e6a122417a
Merge pull request #1491 from eschnett/eschnett/curl
...
Update curl to 7.50.1
2016-08-11 03:04:07 -07:00
Todd Gamblin
84e331c586
Remove unneeded noqa comments.
2016-08-10 16:33:39 -07:00
Todd Gamblin
240f1fd223
Spack packages now PEP8 compliant.
2016-08-10 16:33:39 -07:00
Erik Schnetter
158deae625
Update curl to 7.50.1
2016-08-10 13:51:57 -04:00
Matt Belhorn
2be065418b
Openssl package should not require openssl (https) to obtain source.
2016-08-09 15:57:07 -04:00
alalazo
38dcd6bce9
qa : flake8 issues
2016-08-09 09:54:24 +02:00
alalazo
5362864cc9
plumed : fixed name clash on attribute
2016-08-09 09:24:36 +02:00
Massimiliano Culpo
15d9fb1879
plumed : adding dependents
...
* cp2k : added plumed
* gromacs : patched pme load balancing
* gromacs : added plumed
2016-08-09 09:23:53 +02:00
becker33
3ea1325620
Merge pull request #1345 from hartzell/feature/add-perl-dependency-to-git
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Add depends_on('perl'), depends_on('pcre') to git package
2016-08-08 09:44:50 -07:00
Todd Gamblin
dd30066feb
Merge pull request #1449 from hartzell/feature/add-package-for-prank
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Add package for prank and supporting tools
2016-08-07 23:43:40 -07:00
Todd Gamblin
e65a8b6a9a
Merge pull request #1463 from davydden/pkg/opium
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opium: add new package
2016-08-07 15:56:27 -07:00
Todd Gamblin
8121ac2c27
Merge pull request #1464 from hartzell/feature/update-lmod
...
No need to patch Lmod after 6.4.4
2016-08-07 15:55:16 -07:00
Todd Gamblin
93f5a750cb
Merge pull request #1465 from glennpj/pango_url
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Add list_url to pango package
2016-08-07 15:55:04 -07:00
Todd Gamblin
281f6f18e1
Merge pull request #1466 from pramodk/develop
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PDT should download full installer package
2016-08-07 15:54:50 -07:00
Denis Davydov
db87a9d3ce
tar: fix 1.28 on macOS; add 1.29 ( #1462 )
2016-08-07 15:54:01 -07:00
Adam J. Stewart
d7329d7bc2
Fix erroneously stripped trailing whitespace in patch ( #1467 )
2016-08-07 15:53:25 -07:00
Pramod Kumbhar
e9edfec0ec
PDT should download full installer package pdtoolkit-X.tar.gz (default pdt-X.tar.gz is only for x86 and cray)
2016-08-07 01:14:26 +02:00
Glenn Johnson
2ad21e7070
Add list_url to pango package
...
Added a `list_url` so the updated pango tar file can be retrieved.
2016-08-06 18:12:47 -05:00
George Hartzell
09d96bef9f
No need to patch Lmod after 6.4.4
...
The Lmod author changed the src so that it uses the tclsh (and shared
libraries) discovered at configure time. He did it differently that I
did in this patch, but he changes solve our problem too, so...
2016-08-06 17:39:05 -04:00
George Hartzell
9ebbde0e01
Make configure use our gettext library
...
The configure script needs extra encouragement to link against our
gettext/libintl library.
2016-08-06 16:28:47 -04:00
George Hartzell
1de5817b58
Clean up rebase problems
...
My rebase duplicated the depends_on('zlib') and dropped the --with-curl
from the configure.
This fixes those.
2016-08-06 16:28:47 -04:00
George Hartzell
f699d7c08e
[Whitespace] Gather the depends_on's together.
2016-08-06 16:28:47 -04:00
George Hartzell
152fa33a55
Call configure --with-libpcre=... to use our pcre
...
An earlier commit claimed that this package depends_on('pcre') but I
didn't fix the call to configure that enabled it.
This fixes that.
2016-08-06 16:28:47 -04:00
George Hartzell
3cf2fd40a8
Enable depends_on('pcre') also
...
While I have the patient on the operating table, @adamjstewart asked
me to uncomment and test the depends_on('pcre').
Did it and it Works For Me(tm).
2016-08-06 16:28:47 -04:00
George Hartzell
653905e3a2
Add depends_on('perl') to git package
...
This commit changes the git package to depend_on('perl'). The system
perl is not always sufficient to install git (e.g. a CentOS7 system with
the development tools group installed has perl but not the
ExtUtils::MakeMaker package that git needs) and one can't always update
the system's perl.
This PR depends_on PR #1339 , which adds a perl package to spack.
2016-08-06 16:28:47 -04:00
George Hartzell
f800708ef3
Switch to using *std_cmake_args
2016-08-06 16:27:40 -04:00
George Hartzell
6a62a6b693
Flake8 whitespace cleanup
2016-08-06 16:27:40 -04:00
George Hartzell
a07a0ef54b
Add Bio++ tool suite and supporting libs
...
Add the Bio++ suite and its supporting libraries.
2016-08-06 16:27:40 -04:00
George Hartzell
3c81bb44ba
Add package for mafft
2016-08-06 16:27:40 -04:00
George Hartzell
e0db1f0268
Add package for exonerate
2016-08-06 16:27:40 -04:00
George Hartzell
9e16902397
Fix name of bpp-suite (missing -...)
2016-08-06 16:27:40 -04:00
