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1972 commits

Author SHA1 Message Date
Adam J. Stewart
cf8f14780f MVAPICH2 depends on libpciaccess 2016-07-21 11:13:17 -05:00
Glenn Johnson
ead1b93f75 MPI related changes 
- Redid the code for setting the itac symlink for the cluster edition.
- Removed the *PATH variables for MPI to avoid a conflict with other MPI
  environment modules.
- Added missing test for `+all` when checking variants.
 2016-07-20 20:03:05 -05:00
Glenn Johnson
0be4c7dfbd Changes as discussed in PR review 
- removed unneeded entry for `debugger/gdb/intel64_mic`
- set `+mpi` directory name to impi
 2016-07-20 20:03:05 -05:00
Glenn Johnson
5e5e36a659 Fix flake8 errors. 2016-07-20 19:54:35 -05:00
Glenn Johnson
16f67b5bb1 Setup environment for Intel Parallel Studio 
Set up the environment for the Intel compilers and tools. This commit
does the following:

- Unset variables that were incorrect from the auto guess prefix
  inspections.
- Add a RemovePath environment_modifications_formats for dotkit.
- Set the module environment variables appropriate for the different
  variants.
- Change the component logic so that the '+all' variant works. It was
  getting split by letter and leaving COMPONENTS empty.
- Added a variant checking function.
- Added NONRPM_DB_DIR to the silent.cfg so that the product database
  goes to the installation directory.
- With the product database in prefix the code to remove the product
  database file from the home directory is no longer needed and was
  removed.
- Reformat the 'tools' variant description.

There are probably more variables needed for the '+tools' for the
'professional' product version but I do not have access to that.
 2016-07-20 19:54:35 -05:00
Todd Gamblin
e389afedaa Merge pull request #1323 from glennpj/rlib 
Set environment variables for R
 2016-07-20 15:43:26 -07:00
Todd Gamblin
b9c79824a2 Merge pull request #1313 from sknigh/gnu-tools 
Added packages for GNU tools screen, datamash, and parallel
 2016-07-20 15:38:55 -07:00
Todd Gamblin
0777d3a5ba Merge pull request #1326 from mwilliammyers/package-openexr 
openexr : Add new package
 2016-07-20 15:35:36 -07:00
Glenn Johnson
0c75174ec3 Fix indent/flake8 error. 2016-07-20 15:56:20 -05:00
mwilliammyers
e973adf84b openexr : Add new package 2016-07-20 14:49:03 -06:00
Glenn Johnson
f9137f606f Set environment variables 
This commit adds `setup_environment` to export the libraries and
headers.

Fixes #1314.
 2016-07-20 15:37:31 -05:00
Todd Gamblin
d8acd41ba1 Merge pull request #1321 from mwilliammyers/package-ilmbase 
ilmbase : Add new IlmBase package
 2016-07-20 13:13:21 -07:00
Todd Gamblin
8efbec3c0b Merge pull request #1292 from eschnett/eschnett/hdf5-default-1.10 
Make newest HDF5 release the default version
 2016-07-20 12:57:45 -07:00
Todd Gamblin
4c7c9f4ff5 Merge pull request #1303 from adamjstewart/features/armadillo 
Updates to Armadillo package
 2016-07-20 12:56:41 -07:00
Samuel Knight
24c14ff7a8 Added gnu packages datamash, parallel, and screen 2016-07-20 19:53:14 +00:00
mwilliammyers
c9f4e8ce5a ilmbase : Add new IlmBase package 2016-07-20 13:13:47 -06:00
Todd Gamblin
4434f482c0 remove FIXMEs 2016-07-20 09:48:54 -07:00
Todd Gamblin
3def8ef60e Merge branch 'cdo' of https://github.com/robertdfrench/spack into robertdfrench-cdo 2016-07-20 09:48:01 -07:00
Todd Gamblin
20584ab084 Merge pull request #1302 from robertdfrench/adios-url 
Get adios from github, not NCCS
 2016-07-20 09:47:23 -07:00
Todd Gamblin
7c28338d60 Merge pull request #1301 from robertdfrench/silver-searcher 
Silver Searcher 0.32 is out
 2016-07-20 09:47:12 -07:00
Todd Gamblin
17a63c9646 Merge pull request #1284 from eschnett/eschnett/py-h5py.2 
Declare dependency of "py-h5py +mpi" on "py-mpi4py"
 2016-07-20 09:45:54 -07:00
Todd Gamblin
7f20678969 Merge pull request #1291 from eschnett/eschnett/netcdf-4.4.1 
Update NetCDF to version 4.4.1
 2016-07-20 09:34:14 -07:00
Erik Schnetter
69e36c9821 Ensure that per-4.4.1 NetCDF doesn't use HDF5 1.10 2016-07-20 11:25:46 -04:00
Robert D. French
6b0fb476ab Draft CDO 2016-07-19 15:57:55 -07:00
Robert D. French
1c9cf668a1 Silver Search 0.32 is out 
PEP8 Love + Re-adding v0.30.0
 2016-07-19 10:48:53 -07:00
Adam J. Stewart
8034536054 Fix shared object suffix for macOS 2016-07-19 12:37:34 -05:00
Adam J. Stewart
afa4cdc2d8 Updates to Armadillo package 2016-07-19 12:33:04 -05:00
Robert D. French
25e765baae Download Adios from Github 
Get adios from github, not NCCS

Use correct hash, thanks Ben
 2016-07-19 10:31:59 -07:00
Todd Gamblin
a64a2e72cf Merge pull request #1226 from adamjstewart/features/tkinter 
Add Tkinter support for Python
 2016-07-19 09:41:12 -07:00
Todd Gamblin
4ad29b6c9b Merge pull request #1262 from davydden/pkg/suite_sparse_fix_blas 
suite-sparse: enable TBB and fix Blas/Lapack libs
 2016-07-19 09:18:42 -07:00
Erik Schnetter
71684cb071 Flex requires m4 2016-07-18 23:04:20 -04:00
Erik Schnetter
4dec06e4f4 Make HDF5 1.10 the default version 
Apply this only after NetCDF 4.4.1 is supported.
 2016-07-18 20:14:44 -04:00
Erik Schnetter
94df1b801a Update NetCDF to version 4.4.1 
This version supports HDF5 1.10 in a backward-compatible manner.
 2016-07-18 20:11:32 -04:00
Todd Gamblin
7555c3d949 Merge pull request #1204 from goxberry/cmake-3.6.0 
cmake@3.6.0
 2016-07-18 16:53:17 -07:00
Todd Gamblin
25a9181a1b Merge pull request #1287 from mwilliammyers/package-jasper 
jasper: Add new jasper package
 2016-07-18 15:43:18 -07:00
mwilliammyers
02340062b4 package - jasper - Add new jasper package 2016-07-18 16:17:07 -06:00
Todd Gamblin
607813d5ce setuptools is a build dependency in numpy. 2016-07-18 14:13:14 -07:00
Erik Schnetter
67fade5b1e Declare dependency of "py-h5py +mpi" on "py-mpi4py" 2016-07-18 17:08:56 -04:00
Todd Gamblin
a9ed2296a1 Merge pull request #1282 from eschnett/eschnett/py-numpy 
py-numpy: Add py-setuptools dependencies
 2016-07-18 13:58:17 -07:00
Todd Gamblin
fa0bbb57ea Merge pull request #1270 from davydden/pkg/mumps_scalapack_fix_blas 
Pkg/mumps scalapack fix blas
 2016-07-18 13:57:26 -07:00
Erik Schnetter
49cd6f6269 py-numpy: Add py-setuptools dependencies 
Closes #1281.
 2016-07-18 16:01:48 -04:00
Todd Gamblin
089189afaf Merge pull request #1238 from davydden/pkg/mkl_update 
mkl: add provide blas/lapack
 2016-07-18 11:52:30 -07:00
Adam J. Stewart
ea425a101a Flake8 and new tk version 2016-07-18 07:51:08 -05:00
Adam J. Stewart
583232ea52 Build Python with Tkinter support 2016-07-18 07:51:08 -05:00
Todd Gamblin
b3789a4693 Merge pull request #1269 from davydden/pkg/hypre_trilinos_blas 
Pkg/hypre trilinos blas
 2016-07-18 03:06:37 -07:00
Denis Davydov
2e4966c854 netlib-scalapack: use dso_suffix 2016-07-18 10:11:18 +02:00
Todd Gamblin
c898b9db04 Merge pull request #1188 from epfl-scitas/packages/py-numpy 
RPATH for blas in py numpy
 2016-07-17 21:20:39 -07:00
Todd Gamblin
28ce08b9e2 Merge pull request #1258 from eschnett/eschnett/openmpi-2.0.0 
Update to OpenMPI 2.0.0
 2016-07-17 21:01:21 -07:00
Denis Davydov
1bd3a702c9 mumps: flake8 fixes 2016-07-16 15:14:06 +02:00
Denis Davydov
561748a063 netlib-scalapack: flake8 fixes 2016-07-16 08:03:54 +02:00