Commit graph

10095 commits

Author SHA1 Message Date
darmac
4d3bd1116c
scala: added v2.12.10 and v2.13.1 (#14823) 2020-02-07 13:21:15 +01:00
darmac
7de3ea4e19
squashfs: added v4.4 (#14825) 2020-02-07 13:19:09 +01:00
darmac
710fabd68a
wireshark: added new versions up to v3.2.1 (#14828) 2020-02-07 13:18:29 +01:00
darmac
f9889526f2
thrift: added v0.12.0 and v0.13.0 (#14831) 2020-02-07 13:14:16 +01:00
darmac
7d9a0fa180
hunspell : fix 1.7.0 sha256sum (#14832) 2020-02-07 13:13:22 +01:00
Figroc Chen
458c9a22bf
tensorflow-serving-client: add new version 2.1.0 (#14786) 2020-02-06 12:20:55 -06:00
Robert Mijakovic
6b19582198
update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel… (#14783)
* update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel-studio, pin, tbb and makes url parameter consistent and always use single quote.

* Fixes a typo with one of the sha256 checksum..
2020-02-06 09:20:01 -06:00
Benoist LAURENT
f7e2e84647
Update package.py (#14784)
Fix download link
2020-02-06 09:18:16 -06:00
Massimiliano Culpo
759f6b6d13
Added optimized version of Blis for AMD (#14780)
The Blis package has been refactored to be able to
reuse the build logic for the fork of the project
optimized for AMD.
2020-02-06 07:58:51 -06:00
Figroc Chen
e62c82de7f
grpc: added v1.25.0, v1.26.0 and v1.27.0 (#14781) 2020-02-06 13:20:37 +01:00
darmac
88289cd2c7
graphicsmagick: added versions up to v1.3.34 (#14778) 2020-02-06 11:12:10 +01:00
darmac
1a846abbe8
go: added v1.13.7 (#14777) 2020-02-06 10:54:10 +01:00
iarspider
f66f56287d
geant4: add missing dependency on geant4-data (#14767) 2020-02-06 10:40:56 +01:00
darmac
f745b790f3
gnuplot: added v5.2.8 (#14776) 2020-02-06 10:34:04 +01:00
darmac
bb0b88f38a
enchant: added v2.2.6 and v2.2.7 (#14775) 2020-02-06 10:33:16 +01:00
darmac
588c87c665
blis: added v0.6.1 (#14766) 2020-02-06 10:03:08 +01:00
darmac
c2460dbcd2
cln: added v1.3.5 and v1.3.6 (#14768) 2020-02-06 09:59:51 +01:00
darmac
3b38a45a76
gl2ps: added v1.4.0 (#14773) 2020-02-06 09:58:46 +01:00
darmac
29a906d20c
ghostscript: added v9.27 and v9.50 (#14772) 2020-02-06 09:57:42 +01:00
darmac
0a92b54701
coreutils: added v8.30 and v8.31 (#14770) 2020-02-06 09:56:01 +01:00
darmac
2dab92742d
atop: added versions up to v2.5.0 (#14765) 2020-02-06 08:51:34 +01:00
darmac
58a905ec76
ant: added versions up to v1.10.7 (#14764) 2020-02-06 08:46:13 +01:00
Glenn Johnson
1f6f812696
Update llvm, adjust dependency specs and conflicts (#14561)
This PR adds a new version of llvm and fixes the dependency specs.

- This package depends on libtinfo in all cases so change the ncurses
  dependency to reflect that
- if +lldb is in the spec but +python is not then do not build the lldb
  python support
- build lldb python support only if +python is in the spec with +lldb
- install the llvm python bindings if +python is in the spec
- install the clang python bindings if +clang and +python are in the spec
- Fixes for conflicts with ~clang
- Fix typo in conflict of compiler-rt and flang
2020-02-05 20:37:08 -06:00
Michael Kuhn
1a0c31703a
acts-core package: build root with cxxstd=17 for 0.8.1 and newer (#14761)
The build fails if root uses an older C++ standard.
2020-02-05 17:45:17 -08:00
Cameron Smith
bce4bec059
PUMI package: add version 2.2.2 (#14751) 2020-02-05 17:32:35 -08:00
Themos Tsikas
ba25bb3050
NAG Compiler 6.2 (Build 6252) download checksum (#14750) 2020-02-05 08:02:46 -06:00
Seth R. Johnson
57cc7831bf
qt: fix on Intel (#14748)
Follow up from #14745
2020-02-05 10:23:58 +01:00
Eisuke Kawashima
ffdde40f56
Bump Open Babel to 3 (#14738) 2020-02-04 21:05:19 -06:00
Seth R. Johnson
29a01f488c
Fix QT on Intel (#14745)
- More robustly handle compiler version switching between QT4 and 5, and
  mac/linux, and gcc/intel/clang
- Remove assumption about intel linker being in path
2020-02-04 21:03:47 -06:00
Seth R. Johnson
731148e0e1
Use CMake for libmng package (#14747)
* Convert libmng to use CMake rather than autoconf

The autoconf script failed to recognize the intel compiler; it was
harwired to use gcc.

* Simplify cmake logic and remove unused variant
2020-02-04 19:33:33 -06:00
Seth R. Johnson
52d1f5b839
Remove python patch for inapplicable versions (#14746)
This patch was merged in to upstream python 3.7 and is fixed in 3.7.6.
2020-02-04 19:32:48 -06:00
Christoph Junghans
1974ad4e7f
heffte: initial commit (#14744) 2020-02-04 15:06:03 -07:00
Jennifer Herting
d4d82281d1
[rust] added version 1.41.0 (#14742) 2020-02-04 15:11:36 -06:00
Jennifer Herting
997a0f4207
New version for mariadb and disable dtrace (#14734)
* [mariadb] added version 10.4.8

* [mariadb] disabled dtrace
2020-02-04 15:01:25 -06:00
Rao Garimella
b34e7ad28f
MSTK package: add version 3.3.2 (#14689) 2020-02-04 11:15:45 -08:00
Christoph Junghans
603e2794db
cray-libsci: initial commit (#14709)
* cray-libsci: initial commit
2020-02-04 10:18:20 -07:00
Massimiliano Culpo
1bbe0a1f74
abinit: fix dependency on fftw (#14739)
fixes #14578

Abinit's recipe requires double precision FFTW libraries
2020-02-04 15:29:21 +01:00
Dr. Christian Tacke
0ec9377852
pythia8: added old versions, build depend on rsync (#14740) 2020-02-04 15:27:57 +01:00
Nicolas Richart
19ff3c0f67
akantu: new package at v3.0.0 (#14685) 2020-02-04 11:04:59 +01:00
Andrew W Elble
4accc78409
Git fetching: add option to remove submodules (#14370)
Add an optional 'submodules_delete' field to Git versions in Spack
packages that allows them to remove specific submodules.

For example: the nervanagpu submodule has become unavailable for the
PyTorch project (see issue 19457 at
https://github.com/pytorch/pytorch/issues/). Removing this submodule
allows 0.4.1 to build.
2020-02-03 19:02:45 -08:00
Rob Latham
7d444f08e7
update pmdk to 1.8 (#14733)
new upstream release
- notable in that it has experimental powerpc-le support (e.g. summit)
- required a new patch to disable documentation
2020-02-03 19:15:52 -06:00
Massimiliano Culpo
42633b0869
octave: mkoctfile doesn't use compiler wrappers (#14726)
* Octave: moved the short description in its own paragraph

* Octave: patch mkoctfile.in.cc to avoid using compiler wrappers

* Added a check to ensure mkoctfile works correctly
2020-02-03 15:08:44 -06:00
Adam J. Stewart
74c8f25826
Add new versions of matplotlib (#14731) 2020-02-03 15:07:12 -06:00
albestro
94971d519c
Fix CMake and update libarchive (#14684)
* update libarchive and fix version of libarchive cmake dependency

* (at least) libarchive 3.3.3 dependency from cmake 3.15.0

* cmake depends on libarchive 3.1.0 if not specified differently

currently it is applied to cmake <3.15.0

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-03 11:26:38 -05:00
Andrew W Elble
30dd7ae176
clingo: new versions (#14728)
5.3.0 and 5.4.0
2020-02-03 07:58:34 -06:00
Jean-Paul Pelteret
dcaa50c9d0
deal.II: Add patch for TBB version check (#14724) 2020-02-03 13:04:12 +01:00
Mark W. Krentel
3d9787a8bf
hpcviewer: add version 2020.01 (#14718) 2020-02-02 09:26:21 -06:00
Jean-Paul Pelteret
44f60f9fec
Update package: SymEngine 0.5.0 (#14722) 2020-02-02 09:25:51 -06:00
Adam J. Stewart
0c0aba579a
octave: add maintainer (#14716) 2020-02-01 19:46:35 -06:00
Tim Haines
412c336113
boost: Add versions 1.71.0 and 1.72.0, use Clang toolset on Darwin (#14678)
* boost: Add versions 1.71.0 and 1.72.0

* Remove 'darwin' target

* Add hainest as maintainer
2020-01-31 17:56:40 -06:00
Kelly (KT) Thompson
0c9ac8d8d1
draco: update versions (#14690)
* draco: update versions

+ Added versions 7.3.0 and 7.4.0.
+ Change several variants to be default TRUE since most consumers need these
  variants enabled (eospac, lapack, parmetis, superlu-dist). Change variant name
  for `+superlu_dist` to use hyphen instead of underscore.  This makes the
  variant name consistent with the spackage name for `superlu-dist`.
+ Clean up `depends_on` instructions and avoid specifying `type` when possible.
+ Provide patch files that are necessary for some machines (mostly Cray
  machines).

* Remove trailing whitespace.

* Revert variant name to use underscore.

* add maintainer information.
2020-01-31 14:03:54 -06:00
Themos Tsikas
04e6fd60f3
NAG Fortran Compiler, 6.0 dropped (unavailable), 7.0 added (#14691)
* NAG Fortran Compiler, 6.0 dropped (unavailable), 7.0 added

* Update package.py

* Update package.py
2020-01-31 14:03:31 -06:00
Dr. Christian Tacke
6f4c90378a
[libfabric@1.9.0] Fix C++ header usage (#14703)
Fix from libfabric's git for 1.9.0.

Compiling C++ software against libfabric@1.9.0 doesn't work
without this patch.

See: 2e95b0efd8
2020-01-31 14:01:58 -06:00
Matthieu Dorier
b7ee2d02e4
Fixed DIY package missing MPI dependency (#14704) 2020-01-31 14:01:17 -06:00
Christoph Junghans
d83309493f
superlu-dist: enforce OpenMP=OFF (#14708) 2020-01-31 13:35:46 -06:00
Christoph Junghans
47ee690076
portage: fix compile on icc (#14707) 2020-01-31 13:35:20 -06:00
Andrew W Elble
b072caadec
fix: py-pillow build_ext vs. install (#14666)
Previously, the install stage would compile in things that were
disabled during the build_ext phase. This would also result in the
build pulling in locally installed versions of libraries that were
disabled. The install process doesn't honor the same command-line
flags that build_ext does, but does call build_ext again. Avoid the
whole issue by just writing the options to setup.cfg

Also, add the Imagemagick dependency for tests.
2020-01-30 14:42:48 -06:00
Massimiliano Culpo
1e0408d05a
Updated docstring and version of lmod to v8.3 (#14687) 2020-01-30 12:33:16 -06:00
Adam J. Stewart
ee35d949f9
Add GDAL 3.0.4 (#14688) 2020-01-30 12:08:47 -06:00
Jennifer Herting
a5b2347cfe
[py-joblib] added version 0.11 (#14672) 2020-01-30 02:27:04 -08:00
Jennifer Herting
23a759cda0
[r-manipulatewidget] added versions (#14674) 2020-01-30 02:26:48 -08:00
Jennifer Herting
39035e4517
[r-rgl] added version 0.100.19 (#14675) 2020-01-30 02:26:24 -08:00
Cameron Smith
488e25ea34
pumi: sim version check, meshes via submodule, ctest (#14597)
* pumi: sim version check, meshes via submodule, ctest

* Apply suggestions from code review

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* pumi: update comment on master version string

* pumi: description of simmodsuite_version_check variant

* pumi: add white space to variant description

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-01-29 18:29:07 -06:00
Greg Becker
bd60e0f137
fix cycle dependency in libxml+python (#13847)
* fix cycle dependency in libxml+python
* comment why we need these dependencies
2020-01-29 12:39:55 -08:00
noguchi-k
da189b8d1d
Fastx-toolkit package: patch for Fujitsu compiler (#14218)
Specify the scope of pragma pack
2020-01-29 11:45:37 -08:00
Adam J. Stewart
ed4d544e8f
Fix py-pillow tests (#14670) 2020-01-29 13:24:44 -06:00
Robert Pavel
b142914b24
Added MiniAMR@1.4.4 (#14667) 2020-01-29 13:24:22 -06:00
Robert Pavel
30c8e1d8a0
Added xsbench@19 to Version List (#14668) 2020-01-29 13:24:03 -06:00
Jennifer Herting
549aae7f72
[py-griddataformats] added new versions (#14671) 2020-01-29 13:23:22 -06:00
Michael Kuhn
52a7f94d9e
pythia8: add new package (#14665) 2020-01-29 11:40:39 -06:00
Matthias Wolf
4e3617fe1d
py-pyperf: add 1.6.{0,1} (#14662) 2020-01-29 09:00:03 -06:00
Matthias Wolf
1af36f0cdc
flatbuffers: add 1.11.0 (#14663) 2020-01-29 08:58:41 -06:00
Matthias Wolf
53d891a501
py-black: update url, add 19.3b0 (#14664) 2020-01-29 08:56:54 -06:00
Andrew W Elble
9d7e482497
git: add version 2.25.0 and fixup pcre dependency (#14649)
* git: add version 2.25.0 and fixup pcre dependency

pcre2 became optional in 2.14 and the default in 2.18. I noticed this
as git was compiling against the system pcre2 (spack was
specifying pcre as the dependency).

* missed a chunk from my internal repo
2020-01-28 21:01:25 -06:00
Glenn Johnson
e710656310 Set netcdf-fortran to build serially with Intel compiler (#14461)
* Set netcdf-fortran to build serially with Intel compiler

This PR turns off parallel builds when the Intel compiler is used.
Builds with the Intel compiler will fail otherwise.

* Change how parallel build is handled

Use patch from netcdf-fortran project to turn off parallel buildi for
version 4.5.2.
2020-01-28 15:13:51 -06:00
darmac
2b0b340aab racon: support aarch64 and fix install error (#14529)
* racon: support aarch64 and fix install error

* add aarch64 patch for racon
2020-01-28 15:12:40 -06:00
noguchi-k
ea0a549db3 pcma: set return value and change return type of function (#14579) 2020-01-28 15:08:35 -06:00
t-karatsu
492b600d29 diffutils: Changed the handling of undeclared functions from warning … (#14593)
* diffutils: Changed the handling of undeclared functions from warning to error.

* diffutils: Change the handling of warnings or error

* Delete '-Werror=implicit-function-declaration'

* Add '-Qunused-arguments'
2020-01-28 15:06:37 -06:00
Glenn Johnson
0605fc1557 Build graphite2 with Intel compiler (#14636)
This PR sets the definition of REGPARM when building with the Intel
compiler.
2020-01-28 15:03:13 -06:00
Matthias Diener
94def872ee Moreutils: add new package (#14653)
* moreutils: add new package

* fix flake8
2020-01-28 15:02:07 -06:00
Brian Van Essen
f17ce36da2 Fixed path for CEREAL and Protobuf (#14641) 2020-01-28 15:01:50 -06:00
Axel Huebl
2b6106524a openPMD-api: With ADIOS2 by Default (#14643)
Replace the deprecated ADIOS1 backend default with ADIOS2 default.
Disable sz since we do not need it and it conflicts with supported
version ranges between ADIOS2 and ADIOS1 if someone enables both.
2020-01-28 15:01:15 -06:00
noguchi-k
635fc62de0 powerapi: add a space between literal and identifier (#14645) 2020-01-28 14:59:59 -06:00
noguchi-k
da091c0cf5 med: add a space between literal and identifier (#14646) 2020-01-28 14:59:23 -06:00
Ben Morgan
16da648d03 intel-tbb: Fix install names on Darwin (#14650)
* intel-tbb: Fix install names on Darwin

Intel-TBB's libraries on Darwin are installed with "@rpath" prefixed
to their install names. This was found to cause issues building the root
package on Darwin due to libtbb not being found when running some of the
generated tools linking to it.

Follow example from other packages with the same issue and fixup up install
names for intel-tbb post install.

* intel-tbb: fix flake8 errors
2020-01-28 14:57:25 -06:00
iarspider
67c6d99219 Fix for #14148 (#14595)
* Dirty hack to fix #14148

* A better way of checking if a package is taken from system

* Update var/spack/repos/builtin/packages/qt/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update qt/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-01-28 14:15:29 -06:00
Christoph Junghans
12b0340d2f ninja: add v1.10.0 (#14647) 2020-01-28 09:34:31 -08:00
Adam Moody
6ab2c3caa3 mpifileutils: add v0.10 (#14644)
Signed-off-by: Adam Moody <moody20@llnl.gov>
2020-01-27 20:33:26 -08:00
Joe Koning
e01c39019c Add the py-merlinwf package (#14622)
* Add the py-merlinwf package

* Fix importlib-resources package name for spack naming convention.

* Add build to dependencies and add updated versions.

* Remove pytest-runner dependency.

* Fix typo.

* Add the py-tabulate dependency.

* Add sha256 for version 1.0.0

* Change to maestro version 1.1.5.

* Increase to version 1.0.4.

* Bump maestrowf version and prepare for new pypi version.

* Add sha256sum for version 1.1.5

* Add version 1.1.1.
Update maestrowf version to 1.1.7

* Add versions 1.0.5, 1.1.0, 1.1.1 and potential 1.2.0.

* Add version 1.2.0 and when on maestrowf@1.1.6.

* Add version 1.2.2 , remove 1.2.1 and 1.1.0.

* Update var/spack/repos/builtin/packages/py-merlinwf/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-merlinwf/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Remove mysql variant until new mysql interface module is enabled.
The mysql code may be removed.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-01-27 17:26:43 -06:00
Erik Schnetter
0f3ae864a5 asdf-cxx: new package (#14637) 2020-01-27 14:50:18 +01:00
Erik Schnetter
b7b27d3862 amrex: Update to version 20.01 (#14635)
Now using Github releases instead of git commits.
2020-01-27 10:07:46 +01:00
Sinan
0e86961b84 pygdal and gdal versions should be in lockstep (#14630) 2020-01-26 18:35:16 -06:00
Adam J. Stewart
71f47b3b26
Add py-vermin package (#14631) 2020-01-26 18:34:56 -06:00
Erik Schnetter
02e077a7fa simulationio: Correct HDF5 dependency bounds (#14626)
The HDF5 dependency bound was inverted. (How did this ever compile? There is a cmake check.)
2020-01-26 17:22:43 -06:00
Erik Schnetter
87c55b79c5 hwloc: New version 2.1.0 (#14627) 2020-01-26 17:22:26 -06:00
Erik Schnetter
06e100d5cc curl: New version 7.68.0 (#14625) 2020-01-26 17:06:38 -06:00
Adam J. Stewart
f8be90cf3f
Add TensorFlow 1.15.2 (#14624) 2020-01-26 15:41:09 -06:00
Erik Schnetter
a26e5caa57 h5cpp: Download from github release instead of git repo (#14573)
* h5cpp: Download from github release instead of git repo

* Correct typo in package description
2020-01-25 18:39:36 -06:00
Adam J. Stewart
cb3f4081a0
Add TensorFlow 2.0.1 (#14623) 2020-01-25 12:45:09 -06:00
Glenn Johnson
c700200959 Get vtk-8.2.0 to build (#14562)
This PR adds some extra dependencies needed for vtk-8.2.0. It also
handles the variable name changes to turn off some of the external
libraries.
2020-01-25 12:44:51 -06:00