Commit graph

21492 commits

Author SHA1 Message Date
Robert Cohn
09ee3f8d8e
add required libs for sycl programs (#20728) 2021-01-18 23:15:24 -06:00
yellowhat
83eec2d170
NAMD: FIX build +cuda and mpi ~smp (#20778)
* NAMD: FIX build +cuda

Hi,
If I try to compile NAMD with CUDA support, it fails because cannot file the file "{self.arch}.cuda" because it is undet the "arch" folder.

* NAMD: FIX mpi ~smp

Fix `spack install namd ^charmpp backend=mpi ~smp`
2021-01-18 23:12:06 -06:00
Rao Garimella
a36c40b61d
Update versions of Wonton and Tangram packages (#20813) 2021-01-18 23:06:26 -06:00
Michael Kuron
2e299c5008
siesta: fix build with gfortran (#20840)
Avoid Error: Line truncated at (1) [-Werror=line-truncation]
2021-01-18 22:59:53 -06:00
Erik Schnetter
a2d8023e2a
ssht: New version 1.3.4 (#20880)
* ssht: New version 1.3.4

ssht changed configuration mechanism from "home-grown" to "cmake. The previously current version 1.2b1 (a beta release) is thus unfortunately not available any more.

* ssht: Don't set build type

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-01-18 22:57:53 -06:00
Vicente Bolea
94f1e838b2
ParaView: add new ParaView-5.9.0-RC4 release (#21132)
* ParaView: add new ParaView-5.9.0-RC4 release

Signed-off-by: Vicente Adolfo Bolea Sanchez <vicente.bolea@kitware.com>

* ParaView: add official maintainer @vicentebolea

Signed-off-by: Vicente Adolfo Bolea Sanchez <vicente.bolea@kitware.com>
2021-01-18 22:53:17 -06:00
Toyohisa Kameyama
3143222d87
salmon-tddft: add eigenexa variant (#21140) 2021-01-18 22:52:50 -06:00
Thomas Madlener
d1174bd40f
Make sure sio library is properly propagated (#20940) 2021-01-18 22:52:27 -06:00
darmac
fe32d256d2
ceres-solver: add v2.0.0 (#21005) 2021-01-18 22:51:57 -06:00
Harmen Stoppels
1dab789504
Don't use CUDA for hipblas (#20935)
* Don't use CUDA for hipblas

* old versions use TRY_CUDA

* Update var/spack/repos/builtin/packages/hipblas/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-18 22:49:59 -06:00
Glenn Johnson
85838e98fb
add version 2.2-2 to r-gwmodel (#21121)
* add version 2.2-2 to r-gwmodel

* Update var/spack/repos/builtin/packages/r-gwmodel/package.py

Fix comma, space issue.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-18 16:59:05 -06:00
Glenn Johnson
c7d3651356
add version 0.3.17 to r-inline (#21053)
* add version 0.3.17 to r-inline

* Drop R version constraint

A really old version of R was specified in the 0.3.14 and 0.3.15
versions of r-inline. This constraint was dropped in the 0.3.17 version.
Drop it from the spack recipe as well.
2021-01-18 16:58:08 -06:00
Michael Kuron
cec784bb10
vasp: fix build with gfortran 10 and add version 6.1.1 (#20900)
* vasp: fix build with gfortran 10

Avoid Error: Type mismatch between actual argument at (1) and actual argument at (2)

* vasp: add version 6.1.1

* vasp 6: allow building without CUDA
2021-01-18 16:54:52 -06:00
kuramoto-fj
bd51f81e20
Mapsplice2: Add new package (#20901) 2021-01-18 16:53:50 -06:00
Thomas Madlener
e960721c65
Use shared=True to find libraries, since this is the default (#20907)
package also does not expose a shared variant
2021-01-18 16:51:44 -06:00
Atsushi Hori
777901843f
New Package: Process-in-Process (PiP) -- 2nd trial (#20925)
* Adding PiP recipe

* pip@1 recipe (it seems working)

* change install dir hierarchy

* installing PiP man pages

* add pip-glibc & pip-gdb

* fix configure option designations, fix dependency types

* fix dependency type of pip

* use AutotoolsPackage in pip recipe

* add patch for pip-glibc & pip-gdb to enable 'disable-werror'

* change glibc install directory

* add linux distro check to pip-gdb

* create process-in-process package

* use flag_handler and join_path

* add gcc version constraint, change install-test to check-installed

* fix gcc version designations on conflicts()

* add constraint of target cpu, fix flake8 warnings

* add version constraint to resource()

* Some fixes to adapt the current version
	not to execute 'piplnlibs'
	change documentation install command

* Update
	new branch name of PiP-gdb
	adapting PiP-Testsuite

* update pip-gdb github urls

* The very first commit of Process-in-Process (PiP)
	details can be found at https://github.com/RIKEN-SysSoft/PiP

* Fix comment style issues

* New Package: Process-in-Process (PiP) -- 2nd trial

* fix style issue

* change inline comments style (required to have two spaces)

Co-authored-by: Daiki Matsunaga <daikim@axe.bz>
2021-01-18 16:50:48 -06:00
Tomoyasu Nojiri
b7badf2447
gengetopt: Add texinfo depend (#20929) 2021-01-18 16:40:34 -06:00
bryanherman
c500ea80c3
Add SVN extension to Git (#20939)
* added package for svn extension to perl

* added svn variant to git recipe
2021-01-18 16:39:56 -06:00
takanori-ihara
a5963d686c
eigenexa: new package. (#20934) 2021-01-18 23:37:09 +01:00
G-Ragghianti
335c5ed5cb
Updated with requirements for openblas dependency (#20956)
* Updated with requirements for openblas dependency

* Python style fixes
2021-01-18 16:34:21 -06:00
Simon Frasch
e91ff86882
spfft: add version 1.0.0 (#20959) 2021-01-18 16:33:18 -06:00
Glenn Johnson
699df81a95
add version 1.2-9 to r-aer (#20965) 2021-01-18 12:57:28 -06:00
Glenn Johnson
5fb647d17c
The latest version of imagemagick needs libtool linking (#20969)
Imagemagick-7.0.8 needs to link against libltdl. Otherwise, the build will fail with:

```
2 errors found in build log:
     503    checking for libltdl...
     504    checking ltdl.h usability... no
     505    checking ltdl.h presence... no
     506    checking for ltdl.h... no
     507    checking for lt_dlinit in -lltdl... no
     508    checking if libltdl package is complete... no
  >> 509    configure: error: in `/tmp/gpjohnsn/spack-stage/spack-stage-imagemagick-7.0.8-7-4y44gaklhhciiwjzhfpxjfwdj5q
            ltjp3/spack-src':
  >> 510    configure: error: libltdl is required for modules and OpenCL builds
     511    See `config.log' for more details
```
2021-01-18 12:57:15 -06:00
Glenn Johnson
8f5651e63e
add version 3.3.3 to r-ggplot2 (#21021) 2021-01-18 12:56:36 -06:00
Glenn Johnson
e879c4176d
add version 0.6-2 to r-gmp (#21028) 2021-01-18 12:56:21 -06:00
Glenn Johnson
bd404d8ff8
add version 0.5-1 to r-gridgraphics (#21034) 2021-01-18 12:56:06 -06:00
Glenn Johnson
7f7f9a7bfb
add version 3.8.2 to r-gtools (#21038)
* add version 3.8.2 to r-gtools

* Improve formatting of description

In case the list gets formatted as a non-list:
- added semicolons to end of list items
- replaced dashes with [#]
2021-01-18 12:55:51 -06:00
Glenn Johnson
415cff5061
add version 1.30 to r-knitr (#21061)
* add version 1.30 to r-knitr

* Fix version constraints

- r-digest
- r-formatr

The version constraints on those packages should actually be in the `when`
clause.
2021-01-18 12:55:33 -06:00
Glenn Johnson
91fcd49484
add version 1.0-6 to r-libcoin (#21075) 2021-01-18 12:55:18 -06:00
Glenn Johnson
978f74eac7
add version 1.2.0 to r-gh (#21112) 2021-01-18 12:55:04 -06:00
Glenn Johnson
2c3550ae18
add version 1.1.2 to r-tidyr (#21113) 2021-01-18 12:54:51 -06:00
Glenn Johnson
b424dbfead
new package: r-rcppdate (#21114)
'date' is a C++ header library offering extensive date and time
functionality for the C++11, C++14 and C++17 standards written by Howard
Hinnant and released under the MIT license. A slightly modified version
has been accepted (along with 'tz.h') as part of C++20. This package
regroups all header files from the upstream repository by Howard Hinnant
so that other R packages can use them in their C++ code. At present, few
of the types have explicit 'Rcpp' wrapper though these may be added as
needed.
2021-01-18 12:54:35 -06:00
Glenn Johnson
563d939804
add version 2.0.2 to r-mnormt (#21115) 2021-01-18 12:54:22 -06:00
Glenn Johnson
e132195d6c
add version 3.12.0 to r-mice (#21116) 2021-01-18 12:54:06 -06:00
Glenn Johnson
ca9e103994
new package: r-mutoss (#21117)
Designed to ease the application and comparison of multiple hypothesis
testing procedures for FWER, gFWER, FDR and FDX. Methods are
standardized and usable by the accompanying 'mutossGUI'.
2021-01-18 12:53:53 -06:00
Glenn Johnson
5a42df5944
add version 2.0.4.1 to r-leaflet (#21118) 2021-01-18 12:53:38 -06:00
Glenn Johnson
a693a56459
add version 2.1.0 to r-janitor (#21120) 2021-01-18 12:53:23 -06:00
Glenn Johnson
42748f389f
new package: r-parallelly (#21122)
Utility functions that enhance the 'parallel' package and support the
built-in parallel backends of the 'future' package. For example,
availableCores() gives the number of CPU cores available to your R
process as given by the operating system, 'cgroups' and Linux
containers, R options, and environment variables, including those set by
job schedulers on high-performance compute clusters. If none is set, it
will fall back to parallel::detectCores(). Another example is
makeClusterPSOCK(), which is backward compatible with
parallel::makePSOCKcluster() while doing a better job in setting up
remote cluster workers without the need for configuring the firewall to
do port-forwarding to your local computer.
2021-01-18 12:53:09 -06:00
Glenn Johnson
b9c5a73a48
add version 2.0.0 to r-dbplyr (#21123) 2021-01-18 12:52:55 -06:00
vvolkl
93740d5600
[genfit] add tags and first version (#21127) 2021-01-18 12:49:58 -06:00
Hadrien G
d996fc080a
[acts] Add version 4.1, bump minimal dependencies (#21128) 2021-01-18 12:49:19 -06:00
Michael Kuron
98788aa4bd
py-mdanalysis: correctly depend on py-gsd (#21133) 2021-01-18 12:45:50 -06:00
Sergey Kosukhin
723f132531
python: improve building with Intel (#21134) 2021-01-18 12:44:22 -06:00
dithwick
fa53838d2f
ibm-java: new version (#21135) 2021-01-18 12:43:18 -06:00
darmac
3b064b3a96
py-pycairo: update version and fix setup.py test error (#21004)
* py-pycairo: update version and fix setup.py test error

* py-pycairo: update dependency
2021-01-18 12:34:41 -06:00
Tomoyasu Nojiri
385ca1529a
hssp: Fix checksum for 3.0.10 (#20894)
* hssp: Fix checksum for 3.0.10

* hssp: Fix checksum for 3.0.1 to 3.0.9
2021-01-18 12:21:49 -06:00
Toyohisa Kameyama
3ee8c11910
mpas-model: New package. (#21124)
* mpas-model: New package.

* remove pnetcdf variant.
remove debug print.

* remove unnessesary line.

* style fix.
2021-01-18 12:10:21 -06:00
bryanherman
2cfe349828
added new python package py-f90wrap (#20957) 2021-01-17 22:38:16 -06:00
darmac
5b75dde872
Libconfuse: refine autoreconf and add some dependencies (#21006)
* libconfuse: add some build dependencies

* libconfuse: use autogen.sh to do the autoreconf
2021-01-17 22:30:42 -06:00
Robert Underwood
16ee9dc110
sz: version 2.1.11.1 (#21008) 2021-01-17 22:28:51 -06:00