Frédéric Simonis
33bec18cc2
Add preCICE xSDK support ( #12356 )
...
* Add preCICE xSDK support
* Cleanup generation of cmake arguments
* Generalize numpy include
* Fix python spec
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Fix numpy spec
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-08-11 12:19:44 -05:00
Adam J. Stewart
0d4114b095
Add NCCL 2.4.8-1 ( #12362 )
2019-08-10 11:53:29 -05:00
Adam J. Stewart
c5c1d1db43
Port py-poster to Python 3 ( #12363 )
...
* Port py-poster to Python 3
* Forgot the patch
2019-08-10 11:53:15 -05:00
Adam J. Stewart
e69456bde2
Add py-clipboard package ( #12364 )
2019-08-10 11:52:52 -05:00
Adam J. Stewart
6e14e74014
Add py-gee-asset-manager package ( #12365 )
2019-08-10 11:52:38 -05:00
Adam J. Stewart
889b625452
Add py-geeadd package ( #12366 )
2019-08-10 11:52:24 -05:00
Adam J. Stewart
8e4d60645f
Add py-geeup package ( #12367 )
2019-08-10 11:52:10 -05:00
Adam J. Stewart
706d57bd23
Add py-google-api-core package ( #12368 )
2019-08-10 11:51:56 -05:00
Adam J. Stewart
09e0f1ad4e
Add py-google-cloud-core package ( #12369 )
2019-08-10 11:51:41 -05:00
Adam J. Stewart
3c54e55546
Add py-google-cloud-storage package ( #12370 )
2019-08-10 11:51:27 -05:00
Adam J. Stewart
a3cc7eb4f7
Add py-google-resumable-media package ( #12371 )
2019-08-10 11:51:12 -05:00
Adam J. Stewart
b329d5f27f
Add py-googleapis-common-protos package ( #12372 )
2019-08-10 11:50:58 -05:00
Adam J. Stewart
fbf386328c
Add py-oauth2client package ( #12373 )
2019-08-10 11:50:43 -05:00
Adam J. Stewart
1d0f61816a
Add py-pathlib package ( #12374 )
2019-08-10 11:50:24 -05:00
Adam J. Stewart
37e59cbd7e
Add py-pyperclip package ( #12375 )
2019-08-10 11:50:10 -05:00
Adam J. Stewart
572bc5cc77
Add py-pysmartdl package ( #12376 )
2019-08-10 11:49:55 -05:00
Adam J. Stewart
3601f1c825
Add py-retrying package ( #12377 )
2019-08-10 11:49:41 -05:00
Adam J. Stewart
25b3946e0b
Add py-selenium package ( #12378 )
2019-08-10 11:49:25 -05:00
Sajid Ali
48016366c8
modified: var/spack/repos/builtin/packages/libflame/package.py ( #12379 )
2019-08-10 11:48:58 -05:00
Cameron Smith
a4a30de8a1
libconfig: add version 1.7.1 ( #12324 )
...
* libconfig: add version 1.7.1
* move 1.7.1 above 1.6, latest version is preferred
2019-08-10 11:08:53 -05:00
Seth R. Johnson
54018b488a
Fix build for moab 4.9.2 on gcc8 ( #12328 )
...
```
5 errors found in build log:
609 CXX mbpart.o
610 CXX quality.o
611 CXX umr.o
612 CXX merge.o
613 CXX parread.o
614 mbpart.cpp: In function 'int main(int, char**)':
>> 615 mbpart.cpp:494:19: error: no match for 'operator<<' (operand types
are 'std::ostream' {aka 'std::basic_ostream<char>'} and 'std::ostri
ngstream' {aka 'std::__cxx11::basic_ostringstream<char>'})
616 std::cerr << tmp_output_file << " : failed to write file."
<< std::endl;
617 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
618 mbpart.cpp:494:19: note: candidate: 'operator<<(int, int)' <built-i
n>
619 mbpart.cpp:494:19: note: no known conversion for argument 2 from
'std::ostringstream' {aka 'std::__cxx11::basic_ostringstream<char>'
} to 'int'
620 In file included from /software/user_tools/centos-7.2.1511/cades-ns
ed-spack/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbum
ioobdbkw4rwfyn2givi4nyvwq/include/c++/8.2.0/iterator:64,
621 from /software/user_tools/centos-7.2.1511/cades-ns
ed-spack/var/spack/stage/moab-4.9.2-77uuzmj4ofb7z7vz6m25sftyks7p5do
7/spack-src/src/moab/Range.hpp:167,
...
886 /software/user_tools/centos-7.2.1511/cades-nsed-spack/opt/spack/lin
ux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbumioobdbkw4rwfyn2givi4ny
vwq/include/c++/8.2.0/ostream:682:5: note: candidate: 'template<cla
ss _Ostream, class _Tp> typename std::enable_if<std::__and_<std::__
not_<std::is_lvalue_reference<_Tp> >, std::__is_convertible_to_basi
c_ostream<_Ostream>, std::__is_insertable<typename std::__is_conver
tible_to_basic_ostream<_Tp>::__ostream_type, const _Tp&, void> >::v
alue, typename std::__is_convertible_to_basic_ostream<_Tp>::__ostre
am_type>::type std::operator<<(_Ostream&&, const _Tp&)'
887 operator<<(_Ostream&& __os, const _Tp& __x)
888 ^~~~~~~~
889 /software/user_tools/centos-7.2.1511/cades-nsed-spack/opt/spack/lin
ux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbumioobdbkw4rwfyn2givi4ny
vwq/include/c++/8.2.0/ostream:682:5: note: template argument dedu
ction/substitution failed:
890 /software/user_tools/centos-7.2.1511/cades-nsed-spack/opt/spack/lin
ux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbumioobdbkw4rwfyn2givi4ny
vwq/include/c++/8.2.0/ostream: In substitution of 'template<class _
Ostream, class _Tp> typename std::enable_if<std::__and_<std::__not_
<std::is_lvalue_reference<_Tp> >, std::__is_convertible_to_basic_os
tream<_Ostream>, std::__is_insertable<typename std::__is_convertibl
e_to_basic_ostream<_Tp>::__ostream_type, const _Tp&, void> >::value
, typename std::__is_convertible_to_basic_ostream<_Tp>::__ostream_t
ype>::type std::operator<<(_Ostream&&, const _Tp&) [with _Ostream =
std::basic_ostream<char>&; _Tp = std::__cxx11::basic_ostringstream
<char>]':
891 mbpart.cpp:494:22: required from here
>> 892 /software/user_tools/centos-7.2.1511/cades-nsed-spack/opt/spack/lin
ux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbumioobdbkw4rwfyn2givi4ny
vwq/include/c++/8.2.0/ostream:682:5: error: no type named 'type' in
'struct std::enable_if<false, std::basic_ostream<char>&>'
893 CXXLD mbdepth
894 CXXLD hexmodops
>> 895 make[2]: *** [mbpart.o] Error 1
896 make[2]: *** Waiting for unfinished jobs....
897 make[2]: Leaving directory `/localscratch/tmp/s3j-spack/spack-stage
/spack-stage-NT13kT/spack-src/tools'
>> 898 make[1]: *** [all-recursive] Error 1
899 make[1]: Leaving directory `/localscratch/tmp/s3j-spack/spack-stage
/spack-stage-NT13kT/spack-src/tools'
>> 900 make: *** [all-recursive] Error 1
```
2019-08-10 11:08:13 -05:00
Adam J. Stewart
f9e6f0fb62
py-numexpr: switch from PyPI to GitHub download ( #12360 )
2019-08-09 22:27:34 -05:00
Ricardo Silva
c5849ce04f
gromacs: fix CPU optimizations detection (simd=auto) ( #12354 )
...
* SL-637
* https://redmine.gromacs.org/issues/2927
* tested with cmake 3.14.4 and 3.15.1
2019-08-09 21:38:16 -05:00
Russell J. Hewett
7cc57d74e4
Updated Blaze version 3.5 and added access to master branch ( #12341 )
...
* blaze: added version 3.5
* blaze: added access to bleeding edge
2019-08-09 21:32:54 -05:00
Cameron Stanavige
13112d6b1c
flatcc: add version 0.5.3 ( #12358 )
...
This updates the flatcc package to have the latest version.
2019-08-09 21:32:10 -05:00
Geoffrey Oxberry
28ffc1a4b9
gnome-common: new package ( #12359 )
2019-08-09 21:31:47 -05:00
Geoffrey Oxberry
92c65f3150
Add new package: libfive@master ( #12334 )
2019-08-09 18:10:00 -05:00
Toyohisa Kameyama
b54576abaf
sdl2: fix dependency for libxext and build on ARM ( #12351 )
...
1. add dependency for libxext2.
2. SSEMATH is off is aarch64.
3. reformat comment for flake8.
2019-08-09 10:24:16 -05:00
Sean McGrath
74fe729be2
New Plink beta version ( #12352 )
...
* Plink 1.9 Beta 6.10 added
* Typo Fix
2019-08-09 10:22:18 -05:00
Sinan
a999092a93
newpackage/tippecanoe ( #12319 )
...
* newpackage/tippecanoe
* make flake8 happy
* add "r" for raw text
2019-08-09 10:18:26 -05:00
Geoffrey Oxberry
7b47178a53
bugfix: hunspell: add missing gettext dependency ( #12347 )
...
* hunspell: write autoreconf method to triage error
This commit fixes the error described in GitHub issue
`AutotoolsPackage` class attempts to call `libtoolize`, which doesn't
exist on macOS systems that externally install `libtool` in Spack via
Homebrew -- Homebrew installzes GNU libtoolize as `glibtoolize`.
The fix is to call `autoreconf` only, and GitHub pull request #12344
makes this change in
AutotoolsPackage (https://github.com/spack/spack/pull/12344 ). However,
while waiting for that pull request to be merged, overriding the
`autoreconf` method achieves the same result for a self-contained
fix. This self-contained fix is necessary to fix a dependency bug in
the `hunspell` package.
* hunspell: add missing gettext dependency
* hunspell: add version 1.7.0
2019-08-09 10:17:57 -05:00
Derick Huth
850b2ad42e
Fixed broken iegenlib package ( #12229 )
...
* Fixed broken iegenlib package
* [IEGenLib] fixed for style
* [IEGenLib] style fixes
* [IEGenLib] removed CMAKE_BUILD_TYPE option from config_args
2019-08-09 10:14:17 -05:00
angel-devicente
e203068125
Added checksum for binutils@2.32 ( #12350 )
2019-08-08 23:56:41 -05:00
Greg Becker
be6ac6ce6d
bugfix: nested matrices in spec lists ( #12320 )
...
* stack concretization: fix handling of variant names with dashes
* spec_list: bugfix for handling nested matrices
2019-08-08 20:53:31 -07:00
Geoffrey Oxberry
9336a8be38
enchant@2.2.5: new package ( #12349 )
2019-08-08 22:50:06 -05:00
Toyohisa Kameyama
14bdd56004
hisea: build on ARM. ( #12302 )
2019-08-08 22:45:23 -05:00
Marc-Andre Hermanns
606246572a
Add new releases of Cube Tools, Opari2, OTF2, and Score-P ( #12303 )
2019-08-08 22:44:33 -05:00
Owen Solberg
178476d8c8
new package: Cromwell ( #12309 )
...
* add new package cromwell
* fix flake8 errors, add cromwell-womtool package
* change name of cromwell to cromwell-server
* renamed cromwell-server to just cromwell
* update description to what is in the project docs
* fixing format call for python2.6 compatibility
2019-08-08 22:39:00 -05:00
Sinan
d1e8ea302f
new package: aria2 ( #12318 )
...
* new package: aria2
* tidy up
2019-08-08 22:36:13 -05:00
Cameron Smith
51adb6a4ef
netcdf-cxx4: add m4 dep for call to autoreconf ( #12325 )
2019-08-08 22:29:42 -05:00
Geoffrey Oxberry
1a432fb213
guile: add versions 2.2.1 through 2.2.6 ( #12333 )
2019-08-08 22:22:17 -05:00
Adam J. Stewart
89af88aa02
Re-add py-cython dependency to py-tables ( #12338 )
2019-08-08 21:57:16 -05:00
Adam J. Stewart
b409283ad5
Add py-certifi 2019.6.16 ( #12339 )
2019-08-08 21:57:01 -05:00
Adam J. Stewart
44f4ad7bbf
Allow Spack to uninstall external extensions without permissions ( #11991 )
...
* Allow Spack to uninstall external extensions without permissions
Raise when self.projections is not empty
2019-08-08 17:46:14 -07:00
Adam J. Stewart
0b4e13c034
openssl package: add versions including 1.1.1c ( #12342 )
...
* Add comment that 1.0.1 versions are no longer supported
* Add comment that 1.0.2 versions are only supported up to
December 2019
* Add versions 1.0.2s, 1.0.2r, and 1.0.2p
* Add versions 1.1.0k, 1.1.0j, and 1.1.0i
* Add version 1.1.1c
* Add comment that 1.1.0 versions are only supported up to
September 2019
2019-08-08 17:04:53 -07:00
Pariksheet Nanda
72bb7646fe
docs: fix compiler config ( #12330 )
...
It's no longer possible to set compiler flags under as an entry under
"paths" in compilers.yaml; instead the user must list these under the
"flags" section. This updates the docs accordingly.
2019-08-08 16:47:24 -07:00
Adam J. Stewart
b4862be875
Fix typo in yaml config docs ( #12312 )
2019-08-08 10:56:11 +02:00
Greg Becker
36fbd6cf4c
bugfix: spack stacks mixed dependency and non-dep constraints ( #12315 )
...
Spack stacks drop invalid dependencies applied to packages by a
spec_list matrix operation
Without this fix, Spack would raise an error if orthogonal dependency
constraints and non-dependency constraints were applied to the same
package by a matrix and the dependency constraint was invalid for
that package. This is an error, fixed by this PR.
An example failing configuration:
spack:
definitions:
- packages: [libelf, hdf5+mpi]
- compilers: ['%gcc']
- mpis: [^openmpi]
specs:
- matrix:
- $packages
- $compilers
- $mpis
2019-08-07 18:34:41 -07:00
Peter Scheibel
a791234676
Revert "add maintainer review action to main.workflow" ( #12316 )
...
This reverts commit 54e3bc31f9
2019-08-07 17:23:47 -07:00
Peter Scheibel
92ec732f9a
compiler bootstrapping: enable both single-node and multi-node DAGS( #12310 )
...
5f74f22
2019-08-07 14:43:25 -07:00
