Commit graph

30665 commits

Author SHA1 Message Date
Harmen Stoppels
bf1b2a828c
fix perl libxcrypt.so dep (#33846)
Detected using https://github.com/spack/spack/pull/28109
2022-11-14 18:56:43 +01:00
Dom Heinzeller
2913f8b42b
hdf4: fix build on Apple M1 (#33740) 2022-11-14 17:49:34 +01:00
Harmen Stoppels
57f4c922e9
util-linux: fix deps (#33893) 2022-11-14 17:26:21 +01:00
Todd Gamblin
8d82fecce9 Update CHANGELOG.md for v0.19.0
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-11-14 08:22:29 -06:00
Todd Gamblin
96126cbf17 Update SECURITY.md for v0.19 2022-11-14 08:22:29 -06:00
Todd Gamblin
6ecb57e91f Bump version to v0.20.0.dev0 2022-11-14 08:22:29 -06:00
Harmen Stoppels
a75af62fe3
Get rid of context for exceptions outside PackageBase (#33887) 2022-11-14 14:11:22 +01:00
Massimiliano Culpo
e4e02dbeae
Fix a bug/typo in a config_values.py fixture (#33886) 2022-11-14 05:26:14 -07:00
Massimiliano Culpo
3efa4ee26f
Remove support for running with Python 2.7 (#33063)
* Remove CI jobs related to Python 2.7

* Remove Python 2.7 specific code from Spack core

* Remove externals for Python 2 only

* Remove llnl.util.compat
2022-11-14 13:11:28 +01:00
Harmen Stoppels
f4c3d98064
libxcrypt: 4.4.31 (#33885) 2022-11-14 04:30:04 -07:00
Harmen Stoppels
a4cec82841
Speed up traverse unit tests (#33840) 2022-11-14 09:34:14 +01:00
Veselin Dobrev
3812edd0db
[plasma] add support for building with 'cray-libsci' (#33869) 2022-11-13 21:47:24 -06:00
Harmen Stoppels
3ea9c8529a
tau: checksum (#33873) 2022-11-13 13:06:08 -07:00
Adam J. Stewart
ed28797f83
GDAL: add v3.6.0 (#33856)
* GDAL: add v3.6.0

* Explicitly control BASISU

* More reasonable variant defaults
2022-11-13 13:56:11 -06:00
Adam J. Stewart
eadb6ae774
py-pytorch-lightning: add v1.8.1 (#33854) 2022-11-13 11:45:23 -08:00
Veselin Dobrev
a5d35c3077
[sundials] fix cmake argument generation for '+magma' (#33858)
[dealii] force cmake to accept Scalapack settings from Spack
2022-11-13 09:50:57 -06:00
Todd Gamblin
3d811617e6
hotfix: ensure that schema is compatible with tutorial VM config
We added a hotfix to releases/v0.19 with a feature flag, but the flag
is incompatible with the config schema on `develop`.

- [x] Ensure schema is compatible on develop even though config option is unused.
2022-11-13 09:14:00 -06:00
Massimiliano Culpo
03224e52d2
Speed-up bootstrap and architecture unit tests (#33865)
* Speed-up bootstrap mirror unit test

The unit test doesn't need to concretize, since it checks
only metadata for the mirror.

* architecture.py: use "default_mock_concretization" for slow test
2022-11-13 13:09:22 +01:00
Greg Becker
4ebe57cd64
update tutorial command to newest release branch (#33867) 2022-11-12 13:29:38 -08:00
Greg Becker
343cd04a54
use spack.version_info as source of version truth for spack tutorial command (#33860)
* Use spack.spack_version_info as source of truth

Co-authored-by: Todd Gamblin <gamblin2@llnl.gov>
2022-11-12 11:42:59 -08:00
Morten Kristensen
ed45385b7b
py-vermin: add latest version 1.5.1 (#33861) 2022-11-12 10:31:23 -06:00
Cameron Rutherford
8a3b596042
Update ExaGO for 1.5.0 release. (#33853)
* Update ExaGO for 1.5.0 release
2022-11-11 21:58:56 -06:00
Satish Balay
1792327874
magma: add version 2.7.0 (#33814)
* magma: add version 2.7.0

Co-authored-by: Stan Tomov <tomov@icl.utk.edu>
2022-11-11 21:58:02 -06:00
Veselin Dobrev
d0dedda9a9
[mfem] add a patch to fix some issues with building with ROCm (#33810) 2022-11-11 14:42:42 -08:00
Harmen Stoppels
368dde437a
libxcrypt: 4.4.30 (#33845)
* libxcrypt: 4.4.30

* libxcrypt.so.2 by default

* add libs prop, since libxcrypt provides libcrypt
2022-11-11 15:22:17 -06:00
Massimiliano Culpo
022a2d2eaf
Speed-up unit tests by caching default mock concretization (#33755) 2022-11-11 21:32:40 +01:00
kwryankrattiger
5f8511311c
ParaView: Add variant for VisItBridge (#33783)
* ParaView: Add variant for VisItBridge

* ParaView: Add kwryankrattiger has package maintainer
2022-11-11 13:09:43 -07:00
Greg Becker
2d2c591633
ensure view projections for extensions always point to extendee (#33848) 2022-11-11 10:59:23 -07:00
Satish Balay
d49c992b23
xsdk: update maintainers (#33822) 2022-11-11 08:30:28 -06:00
Satish Balay
f1392bbd49
trilinos: add version 13.4.1 (#33533)
And update dependency on superlu-dist (now works with @8)
2022-11-11 09:28:47 -05:00
Harmen Stoppels
c14dc2f56a
docs: updates related to extensions (#33837) 2022-11-11 13:24:17 +01:00
Harmen Stoppels
0f54a63dfd
remove activate/deactivate support in favor of environments (#29317)
Environments and environment views have taken over the role of `spack activate/deactivate`, and we should deprecate these commands for several reasons:

- Global activation is a really poor idea:
   - Install prefixes should be immutable; since they can have multiple, unrelated dependents; see below
   - Added complexity elsewhere: verification of installations, tarballs for build caches, creation of environment views of packages with unrelated extensions "globally activated"... by removing the feature, it gets easier for people to contribute, and we'd end up with fewer bugs due to edge cases.
- Environment accomplish the same thing for non-global "activation" i.e. `spack view`, but better.

Also we write in the docs:

```
However, Spack global activations have two potential drawbacks:

#. Activated packages that involve compiled C extensions may still
   need their dependencies to be loaded manually.  For example,
   ``spack load openblas`` might be required to make ``py-numpy``
   work.

#. Global activations "break" a core feature of Spack, which is that
   multiple versions of a package can co-exist side-by-side.  For example,
   suppose you wish to run a Python package in two different
   environments but the same basic Python --- one with
   ``py-numpy@1.7`` and one with ``py-numpy@1.8``.  Spack extensions
   will not support this potential debugging use case.
```

Now that environments are established and views can take over the role of activation
non-destructively, we can remove global activation/deactivation.
2022-11-11 00:50:07 -08:00
Greg Becker
f11778bb02
remove deprecated top-level module config (#33828)
* remove deprecated top-level module config per deprecation in 0.18
2022-11-10 23:35:33 -08:00
Brian Van Essen
3437926cde
Fixed a bug where the external HIP library is found in a nested directory, even on newer releases of ROCm. (#33772) 2022-11-10 23:32:55 -08:00
Pranith
d25375da55
emacs: Add version 28.2 (#33255) 2022-11-11 04:07:11 +01:00
Yang Zongze
0b302034df
global: add --with-ncurses with prefix to configure (#33136) 2022-11-11 03:40:03 +01:00
Seth R. Johnson
b9f69a8dfa
go-bootstrap: improve error message for Monterey (#31800)
Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2022-11-11 02:22:37 +01:00
Loïc Pottier
c3e9aeeed0
redis-plus-plus: added initial support (#33803)
* redis-plus-plus: added initial support
* redis-plus-plus: use cmake arg provided by Spack
* redis-plus-plus: oups tiny typo

Signed-off-by: Loïc Pottier <pottier1@llnl.gov>
Signed-off-by: Loïc Pottier <lpottier@arnor>
Co-authored-by: Loïc Pottier <lpottier@arnor>
2022-11-10 17:19:45 -08:00
Greg Becker
277234c044
remove deprecated concretization environment key (#33774) 2022-11-11 00:11:52 +00:00
Harmen Stoppels
0077a25639
Use bfs order in spack find --deps tree (#33782)
* Use bfs order in spack find --deps tree
* fix printing tests
2022-11-10 15:39:07 -08:00
Massimiliano Culpo
6a3e20023e
Delete directory with vestigial configuration file (#33825) 2022-11-11 00:10:29 +01:00
MatthewLieber
f92987b11f
adding sha for 7.0 release (#33823)
Co-authored-by: Matthew Lieber <lieber.31@osu.edu>
2022-11-10 14:24:05 -08:00
Satish Balay
61f198e8af
xsdk: deprecate 0.6.0, and remove older deprecated releases (#33815)
xsdk-examples: deprecate @0.2.0, remove @0.1.0 in sync with older xsdk releases
2022-11-10 14:16:17 -08:00
Glenn Johnson
4d90d663a3
Cran updates (#33819)
* add version 1.7-20 to r-ade4
* add version 1.1-13 to r-adephylo
* add version 0.3-20 to r-adespatial
* add version 1.2-0 to r-afex
* add version 0.8-19 to r-amap
* add version 0.1.8 to r-aplot
* add version 2.0.8 to r-biasedurn
* add version 2.4-4 to r-bio3d
* add version 1.30.19 to r-biocmanager
* add version 1.2-9 to r-brobdingnag
* add version 0.4.1 to r-bslib
* add version 3.7.3 to r-callr
* add version 3.1-1 to r-car
* add version 0.3-62 to r-clue
* add version 1.2.0 to r-colourpicker
* add version 1.8.1 to r-commonmark
* add version 0.4.3 to r-cpp11
* add version 1.14.4 to r-data-table
* add version 1.34 to r-desolve
* add version 2.4.5 to r-devtools
* add version 0.6.30 to r-digest
* add version 0.26 to r-dt
* add version 1.7-12 to r-e1071
* add version 1.8.2 to r-emmeans
* add version 1.1.16 to r-exomedepth
* add version 0.1-8 to r-expint
* add version 0.4.0 to r-fontawesome
* add version 1.5-2 to r-fracdiff
* add version 1.10.0 to r-future-apply
* add version 3.0.1 to r-ggmap
* add version 3.4.0 to r-ggplot2
* add version 2.1.0 to r-ggraph
* add version 0.6.4 to r-ggsignif
* add version 0.6-7 to r-gmp
* add version 2022.10-2 to r-gparotation
* add version 0.8.3 to r-graphlayouts
* add version 1.8.8 to r-grbase
* add version 2.1-0 to r-gstat
* add version 0.18.6 to r-insight
* add version 1.3.1 to r-irkernel
* add version 1.8.3 to r-jsonlite
* add version 1.7.0 to r-lava
* add version 1.1-31 to r-lme4
* add version 5.6.17 to r-lpsolve
* add version 5.5.2.0-17.9 to r-lpsolveapi
* add version 1.2.9 to r-mapproj
* add version 3.4.1 to r-maps
* add version 1.1-5 to r-maptools
* add version 1.3 to r-markdown
* add version 6.0.0 to r-mclust
* add version 4.2-2 to r-memuse
* add version 1.8-41 to r-mgcv
* add version 1.2.5 to r-minqa
* add version 0.3.7 to r-nanotime
* add version 2.4.1.1 to r-nfactors
* add version 3.1-160 to r-nlme
* add version 2.7-1 to r-nmof
* add version 0.60-16 to r-np
* add version 2.0.4 to r-openssl
* add version 4.2.5.1 to r-openxlsx
* add version 0.3-8 to r-pbdzmq
* add version 2.0-3 to r-pcapp
* add version 0.7.0 to r-philentropy
* add version 2.0.3 to r-pkgcache
* add version 1.3.1 to r-pkgload
* add version 1.10-4 to r-polyclip
* add version 3.8.0 to r-processx
* add version 1.7.2 to r-ps
* add version 2.12.1 to r-r-utils
* add version 1.2.4 to r-ragg
* add version 3.7 to r-rainbow
* add version 0.0.20 to r-rcppannoy
* add version 0.3.3.9.3 to r-rcppeigen
* add version 0.3.12 to r-rcppgsl
* add version 1.0.2 to r-recipes
* add version 1.1.10 to r-rmutil
* add version 0.10.24 to r-rmysql
* add version 2.4.8 to r-rnexml
* add version 4.1.19 to r-rpart
* add version 1.7-2 to r-rrcov
* add version 0.8.28 to r-rsconnect
* add version 0.25 to r-servr
* add version 1.7.3 to r-shiny
* add version 3.0-0 to r-spatstat-data
* add version 3.0-3 to r-spatstat-geom
* add version 3.0-1 to r-spatstat-random
* add version 3.0-0 to r-spatstat-sparse
* add version 3.0-1 to r-spatstat-utils
* add version 1.8.0 to r-styler
* add version 3.4.1 to r-sys
* add version 1.5-2 to r-tclust
* add version 0.0.9 to r-tfmpvalue
* add version 1.2.0 to r-tidyselect
* add version 0.10-52 to r-tseries
* add version 4.2.2 to r-v8
* add version 0.5.0 to r-vctrs
* add version 2.6-4 to r-vegan
* add version 0.7.0 to r-wk
* add version 0.34 to r-xfun
* add version 1.0.6 to r-xlconnect
* add version 3.99-0.12 to r-xml
* add version 0.12.2 to r-xts
* add version 1.0-33 to r-yaimpute
* add version 2.3.6 to r-yaml
* add version 2.2.2 to r-zip
* add version 2.2-7 to r-deoptim
* add version 4.3.1 to r-ergm
* add version 0.18 to r-evaluate
* add version 1.29.0 to r-future
* add version 0.0.8 to r-ggfun
* add version 0.9.2 to r-ggrepel
* add version 1.9.0 to r-lubridate
* add version 4.10.1 to r-plotly
* add version 0.2.12 to r-rcppcctz
* add version 1.2 to r-rook
* add version 1.6-1 to r-segmented
* add version 4.2.1 to r-seurat
* add version 4.1.3 to r-seuratobject
* add version 1.0-9 to r-sf
* add version 1.5-1 to r-sp
* add version 1.8.1 to r-styler
* new package: r-timechange
* new package: r-stars
* new package: r-sftime
* new package: r-spatstat-explore

Co-authored-by: glennpj <glennpj@users.noreply.github.com>
2022-11-10 12:06:13 -07:00
Rémi Lacroix
7a7e9eb04f
pandoc: add version 2.19.2 (#33811) 2022-11-10 10:47:28 -08:00
Chris White
3ea4b53bf6
add utilities and examples variants to conduit (#33804) 2022-11-10 11:05:24 -07:00
Olivier Cessenat
ad0d908d8d
octave: new version 7.3.0 (#33788) 2022-11-10 09:42:00 -08:00
Harmen Stoppels
9a793fe01b
gcc: drop target bootstrap flags for aarch64 (#33813)
See https://github.com/spack/spack/issues/31184

GCC bootstrap logic adds `-mpcu` for libatomic (iirc), which conflicts
with the `-march` flag we provide.
2022-11-10 17:42:45 +01:00
Dave Love
6dd3c78924
elpa: Fix build on ppc64le (#33639) 2022-11-10 14:51:17 +01:00
Axel Huebl
5b080d63fb
pybind11: v2.10.1 (#33645)
Add the latest release of pybind11:
  https://github.com/pybind/pybind11/releases/tag/v2.10.1
2022-11-10 05:01:57 -07:00