Commit graph

16277 commits

Author SHA1 Message Date
Adam J. Stewart
cce629e791
SciPy: add v1.5.1 (#17380) 2020-07-05 14:58:26 -05:00
TZ
bb15addad5
inel-mpi: fix for wrong structure name instroduced in ea8a0be4 (#17382)
it's    mpi_compiler_wrappers
and not mpi_compiler._wrappers

fixes 2nd part of #17371
2020-07-05 11:10:28 -05:00
Adam J. Stewart
e9e3e88f63
Fix Intel MPI super invocation, again (#17378) 2020-07-05 11:09:24 -05:00
fcannini
c797a0611c
dtfbplus: New package. (#15191)
* dtfbplus: New package.

* dftbplus: Addresses @adamjstewart's comments on PR #15191

* dftbplus: Fixes format() calls that slipped in previous commit.

* dftbplus: Appease flake8.

* dftbplus: Change 'url' and misc. fixes.

* Add a resource to do the job of './utils/get_opt_externals'
2020-07-04 08:27:32 -05:00
Shahzeb Siddiqui
04f3000646
Pipelines doc: fixed two broken links (#17355) 2020-07-03 12:29:45 +02:00
Amjad Kotobi
f3eba3c482
py-python-swiftclient: added v3.10.0 (#17352) 2020-07-03 12:25:54 +02:00
g-mathias
02fa7b680f
elpa: added v2019.11.001 and v2020.05.001 (#17368)
Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
2020-07-03 11:52:02 +02:00
Paul R. C. Kent
8fcd917e51
libelf: added extra url (#17358) 2020-07-03 11:49:58 +02:00
g-mathias
9c85d87b90
jube: added v2.3.0 (#17366)
Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
2020-07-03 10:13:37 +02:00
yellowhat
b45fc97564
Package request: HPCG (#17350)
* use patch from upstream

Co-authored-by: Michael Kuhn <michael.kuhn@informatik.uni-hamburg.de>
2020-07-03 10:05:24 +02:00
ketsubouchi
986f68f7ed
blktrace: use Spack compiler wrappers (#17365) 2020-07-02 23:39:04 -07:00
ketsubouchi
2cd9e1eb62
blat: use SPACK_CC (#17364) 2020-07-02 23:38:23 -07:00
darmac
61804f201a
glusterfs: add pkgconfig dependency (#17343) 2020-07-02 23:35:38 -07:00
g-mathias
cf104b0f10
jmol: add version 14.31.0 (#17351)
Also:

* Add url_for_version function
* Add Java to PATH for run environment
* Update `install` method to handle old and new version

Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
2020-07-02 23:34:00 -07:00
Kelly (KT) Thompson
17106a131d
Random123: add versions 1.10, 1.13.2 (#17361) 2020-07-02 23:25:53 -07:00
Christoph Junghans
cc0dda95c4 quicksilver: add v1.0 2020-07-02 23:24:44 -07:00
takanori-ihara
7679e20e83
py-tensorflow: Fix for tensorflow issue #40688 (#17324)
* py-tensorflow: Fix for #40688

* py-tensorflow:  Fix for tensorflow issue #40688
2020-07-02 21:49:29 -05:00
Michio Ogawa
4349c091e7
FrontISTR: add version 5.1 (#17349) 2020-07-02 15:34:25 -07:00
darmac
ff60f51a7a
keepalived: openssl is a link and build dependency (#17346) 2020-07-02 15:13:24 -07:00
Amjad Kotobi
06da1f195c
openmpi: add singularity variant (#17288) 2020-07-02 15:10:06 -07:00
iarspider
3d98ad3f4c
New packages: heputils and mcutils (#17330)
heputils is a (conditional) dependency of mcutils
2020-07-02 15:05:20 -07:00
Harmen Stoppels
f1bb8999ab
cpprestsdk: add version 2.10.16 (#17331)
Also

* Patch is only needed for 2.9.1
* Add openssl dependency
* Build with -DWERROR:BOOL=Off
2020-07-02 15:02:12 -07:00
Sinan
1e75dde7b2
mapnik: add version 3.0.23, update boost dependency (#17338) 2020-07-02 14:56:36 -07:00
manifest
f780839b87
examl + (#17265)
* examl +

* examl style fix

* examl flake8 fix

* Update var/spack/repos/builtin/packages/examl/package.py

using `working_dir`

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-02 09:43:47 -05:00
Andrew Gaspar
204f15b4c1
py-fortran-language-server: new package at v1.11.1 (#17318)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-02 10:22:01 +02:00
Michael Kuhn
a4fff39d7e
py-shroud: added v0.12.1 (#17332)
py-setuptools is also needed at runtime, otherwise we get errors:
```
ModuleNotFoundError: No module named 'pkg_resources'
```
2020-07-02 10:14:57 +02:00
Michael Kuhn
10016a34e0
autotools: Fix config.guess detection, take two (#17333)
The previous fix from #17149 contained a thinko that produced errors for
packages that overwrite configure_directory.
2020-07-02 00:45:41 -07:00
Sinan
e133b44da6
py-opt-einsum: added v3.2.1, v3.2.0 and v2.3.2 (#17339)
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-07-02 09:14:39 +02:00
Paul R. C. Kent
5732d8de50
py-sphinxcontrib-bibtex: added v1.0.0 (#17336) 2020-07-02 08:32:26 +02:00
mic84
509b3c3016
amrex: added v20.07 (#17337)
Also added support for hdf5, petsc and hypre
2020-07-02 08:28:57 +02:00
ketsubouchi
8a9fa9bd18
biobloom: use the correct standard library for Fujitsu compilers (#17327) 2020-07-02 08:11:56 +02:00
Massimiliano Culpo
a5eabfad91
Moved flake8, shell and documentation tests to Github Action (#17328)
* Move flake8 tests on Github Actions

* Move shell test to Github Actions

* Moved documentation build to Github Action

* Don't run coverage on Python 2.6

Since we get connection errors consistently on Travis
when trying to upload coverage results for Python 2.6,
avoid computing coverage entirely to speed-up tests.
2020-07-01 11:58:53 -05:00
Adam J. Stewart
6a77f1ff45
Fix hashlib function capitalization (#17323) 2020-07-01 09:46:20 -05:00
Glenn Johnson
60283775b3
Documentation update for container example (#17321)
This updates the documentation to reflect #17316.
2020-07-01 08:40:36 +02:00
Greg Becker
4433e4de2d
Use apple-clang for MacOS nightly tests (#17320) 2020-07-01 08:21:08 +02:00
darmac
aaf6f80d4c
hbase: refine url , java and version (#17306)
* hbase: refine url , java and version

* Update var/spack/repos/builtin/packages/hbase/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-30 22:22:32 -05:00
Gregory Becker
59fb789290 Merge branch 'releases/v0.15' into develop 2020-06-30 19:19:12 -05:00
Gregory Becker
d4bf70d988 changelog for v0.15.0 2020-06-30 18:21:32 -05:00
Gregory Becker
49aebb44b1 bump version number 2020-06-30 18:21:32 -05:00
Glenn Johnson
37d7b5b199
Activate environment in container file (#17316)
* Activate environment in container file

This PR will ensure that the container recipes will build the spack
environment by first activating the environment.

* Deactivate environment before environment collection

For Singularity, the environment must be deactivated before running the
command to collect the environment variables. This is because the
environment collection uses `spack env activate`.
2020-06-30 18:17:58 -05:00
Greg Becker
cec55577d4
run github workflows on release branches (#17317) 2020-06-30 18:10:10 -05:00
Massimiliano Culpo
486b4671b6
Don't detect "classic" on Cray to avoid a compiler bug (#17314)
* Don't detect "classic" on Cray to avoid a compiler bug

* add tests

Co-authored-by: Gregory Becker <becker33@llnl.gov>
2020-06-30 15:45:29 -05:00
Johannes Blaschke
1d55adfd2b
Add fish shell support (#9279)
* share/spack/setup-env.fish file to setup environment in fish shell

* setup-env.fish testing script

* Update share/spack/setup-env.fish

Co-Authored-By: Elsa Gonsiorowski, PhD <gonsie@me.com>

* Update share/spack/qa/setup-env-test.fish

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* updates completions using `spack commands --update-completion`

* added stderr-nocaret warning

* added fish shell tests to CI system


Co-authored-by: becker33 <becker33@llnl.gov>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Elsa Gonsiorowski, PhD <gonsie@me.com>
2020-06-30 14:26:27 -05:00
Greg Becker
212299a021
Cray compiler: fix implicit rpaths for classic versions (#17310)
* check link dirs for existence
2020-06-30 12:46:20 -05:00
Andrew Gaspar
c12885768d
cmake v3.17.3 (#17313) 2020-06-30 11:37:06 -05:00
Andrew W Elble
78ac36204e
half: fix __F16C__ include of immintrin.h (#17272)
Small fix so that immintrin.h gets included properly when the
compiler sets __F16C__. Upstream has been notified.
2020-06-30 11:27:34 -05:00
darmac
463d0d7bd9
filebench:remove autoreconf() (#17305) 2020-06-30 11:05:39 -05:00
albestro
55796203c4
add constrain for hpx 1.4.* and boost 1.73.0 (#17307)
https://github.com/STEllAR-GROUP/hpx/issues/4728#issuecomment-640685308
2020-06-30 11:03:26 -05:00
Tomoki, Karatsu
0fd71d24ba
cleverleaf: Add C++ link flags for Fujitsu. (#17308) 2020-06-30 11:02:18 -05:00
Mark Olesen
c4c010c0bf
Add OpenFOAM 2006 (2020-06) release (#17309)
Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-06-30 11:01:00 -05:00