Commit graph

25420 commits

Author SHA1 Message Date
Sreenivasa Murthy Kolam
437c1e438e
add MIOPEN_AMDGCN_ASSEMBLER to cmake args (#25159) 2021-08-02 09:38:34 +02:00
Weiqun Zhang
55e218649a
amrex: 21.08 (#25175) 2021-08-01 15:47:48 -07:00
Erik Schnetter
f9703c1c9f
kadath: New package (#25162)
* kadath: New package

* Update var/spack/repos/builtin/packages/kadath/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/kadath/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/kadath/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/kadath/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* kadath: Add description to MPI variant

* kadath: Add empty line

* kadath: Add variant "codes=none" to avoid empty default

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-08-01 19:22:07 +00:00
Iman Hosseini
861abb512e
laghos: add variant with compiler optimization (#24910)
* add variant with compiler optimization

Update package.py to include variant with compiler optimization, benchmarked at A-HUG hackaton to improve major kernel time by roughly 3%.

* fix style

* Update var/spack/repos/builtin/packages/laghos/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-08-01 18:58:24 +00:00
Jen Herting
8867827a89
[py-asteval] added version 0.9.25 (#25107)
* [py-asteval] added version 0.9.25

* [py-asteval] 0.9.25 requires py-setuptools-scm
2021-08-01 11:43:58 -05:00
iarspider
a9bc118031
[giflib] Set LIBVER and LIBMAJOR when installing (#25173)
* Set LIBVER and LIBMAJOR

* Typo fix

* Fix 2

* Fix #3
2021-08-01 11:37:31 -05:00
Todd Gamblin
ab5954520f
spack diff: make output order deterministic (#25169)
The output order for `spack diff` is nondeterministic for larger diffs -- if you
ran it several times it will not put the fields in the spec in the same order on
successive invocations.

This makes a few fixes to `spack diff`:

- [x] Implement the change discussed in https://github.com/spack/spack/pull/22283#discussion_r598337448
      to make `AspFunction` comparable in and of itself and to eliminate the need for `to_tuple()`

- [x] Sort the lists of diff properties so that the output is always in the same order.

- [x] Make the output for different fields the same as what we use in the solver. Previously, we
      would use `Type(value)` for non-string values and `value` for strings.  Now we just use
      the value.  So the output looks a little cleaner:

      ```
      == Old ==========================        == New ====================
      @@ node_target @@                        @@ node_target @@
      -  gdbm Target(x86_64)                   -  gdbm x86_64
      +  zlib Target(skylake)                  +  zlib skylake
      @@ variant_value @@                      @@ variant_value @@
      -  ncurses symlinks bool(False)          -  ncurses symlinks False
      +  zlib optimize bool(True)              +  zlib optimize True
      @@ version @@                            @@ version @@
      -  gdbm Version(1.18.1)                  -  gdbm 1.18.1
      +  zlib Version(1.2.11)                  +  zlib 1.2.11
      @@ node_os @@                            @@ node_os @@
      -  gdbm catalina                         -  gdbm catalina
      +  zlib catalina                         +  zlib catalina
      ```

I suppose if we want to use `repr()` in the output we could do that and could be
consistent but we don't do that elsewhere -- the types of things in Specs are
all stringifiable so the string and the name of the attribute (`version`, `node_os`,
etc.) are sufficient to know what they are.
2021-08-01 05:15:33 +00:00
Erik Schnetter
1e708bdb45
lorene: Install only executables, not unrelated files (#25148)
* lorene: Install only executables, not unrelated files in the same directory

* lorene: Don't determine compile dependencies

The current way doesn't work (cpp misses C++ include paths), and we don't need dependencies anyway.

* lorene: Correct BLAS library names

* lorene: Remove comment
2021-07-31 21:11:34 -05:00
Garth N. Wells
60eef9c0de
Add missing xtl dependency for fenics-basix and py-fenics-basix (#25151) 2021-07-31 21:10:24 -05:00
Erik Schnetter
b5f587bbe0
libjpeg-turbo: New version 2.1.0 (#25153) 2021-07-31 20:59:05 -05:00
gpotter2
b1abfd3ff6
Use the new cool Github templates (#25118)
* Use the new cool github templates

* Add the "mention maintainers" clause

* Fix broken HTML tag

* Minor improvements, missing filenames
2021-07-31 20:44:20 -05:00
Jen Herting
b4c6c11e68
[py-pyarrow] added version 3.0.0 and 4.0.1 (#25161)
* [py-pyarrow] added version 4.0.1

* [py-pyarrow] added version 3.0.0

* [py-pyarrow] updated dependencies for newer versions
2021-07-30 21:16:49 +00:00
Jen Herting
886e94d0ee
[arrow] added versions 3.0.0 and 4.0.1 (#25160)
* [arrow] added version 4.0.1

* [arrow] added version 3.0.0
2021-07-30 20:38:23 +00:00
Scott Wittenburg
de88d2c7cc
CI: capture stdout/stderr output to artifact files (#24401)
Gitlab truncates job trace output (even the complete raw output) at 4MB,
so this change captures it to a file under "user_data" artifacts as well,
to make sure we can debug output from the end of the rebuild job.
2021-07-30 13:24:03 -06:00
Scott Wittenburg
f591e9788d
pipelines: Store details about specs broken on develop (#24637)
When a spec fails to build on `develop`, instead of storing an empty file as the entry in the broken specs list, this change stores the full spec yaml as well as links to the failing  pipeline and job.
2021-07-30 09:11:00 -06:00
Ryan Marcellino
3df1d9062e
add new version of py-dvc (#25152)
Co-authored-by: Cloud User <marcryan@ryanmarcelli001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2021-07-30 15:01:56 +00:00
Sebastian Ehlert
771e73dfa4
dftd4: add v3.2.0, v3.1.0 and v3.0.0 (#25145) 2021-07-30 14:56:40 +00:00
Ryan Marcellino
d02d683126
py-fsspec: add v0.9.0 (#25133)
Co-authored-by: Cloud User <marcryan@ryanmarcelli001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2021-07-30 12:16:22 +02:00
Ryan Marcellino
3408440991
py-dulwich: add v0.20.21 (#25132)
Co-authored-by: Cloud User <marcryan@ryanmarcelli001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2021-07-30 12:15:25 +02:00
Ryan Marcellino
3baac2faac
py-diskcache: add v5.2.1 (#25131)
Co-authored-by: Cloud User <marcryan@ryanmarcelli001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2021-07-30 12:14:58 +02:00
Cyrus Harrison
69ce54b86a
fides: add new package (#25128) 2021-07-30 12:14:16 +02:00
Olli Lupton
84613da90a
Add C-Reduce and dependencies. (#25109) 2021-07-30 09:59:06 +00:00
Ryan Marcellino
4b89f6a90b
py-rich: add v10.0.0 (#25134)
Co-authored-by: Cloud User <marcryan@ryanmarcelli001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2021-07-30 11:37:07 +02:00
Ryan Marcellino
c26f328e1a
py-psutil: add v5.8.0 (#25135)
Co-authored-by: Cloud User <marcryan@ryanmarcelli001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2021-07-30 11:36:37 +02:00
Ryan Marcellino
d969320ba1
py-pygit2: add v1.6.0 (#25136)
Co-authored-by: Cloud User <marcryan@ryanmarcelli001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2021-07-30 11:35:46 +02:00
downloadico
72acc54d84
octopus: add cuda variant (#25126) 2021-07-30 11:33:42 +02:00
Garth N. Wells
711ed17606
FEniCSx: updated dependencies (#25110)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-07-30 11:32:28 +02:00
Swann Perarnau
c1de2e926d
aml: update website, repository, and maintainer (#25140)
AML moved its repository and website during spring 2021.

Signed-off-by: Swann Perarnau <swann@anl.gov>
2021-07-30 11:22:20 +02:00
Axel Huebl
189ff91f25
openPMD-api: add v0.14.0 (#25142)
Add the latest release.
2021-07-30 11:14:19 +02:00
AMD Toolchain Support
bbfaf4e816
quantum-espresso: update patch for AOCC support (#25144)
Co-authored-by: mohan002 <mohbabul@amd.com>
2021-07-30 11:07:57 +02:00
Vanessasaurus
54e8e19a60
adding spack diff command (#22283)
A `spack diff` will take two specs, and then use the spack.solver.asp.SpackSolverSetup to generate
lists of facts about each (e.g., nodes, variants, etc.) and then take a set difference between the
two to show the user the differences.

Example output:

    $ spack diff python@2.7.8 python@3.8.11
     ==> Warning: This interface is subject to change.

     --- python@2.7.8/tsxdi6gl4lihp25qrm4d6nys3nypufbf
     +++ python@3.8.11/yjtseru4nbpllbaxb46q7wfkyxbuvzxx
     @@ variant_value @@
     -  python patches a8c52415a8b03c0e5f28b5d52ae498f7a7e602007db2b9554df28cd5685839b8
     +  python patches 0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87
     @@ version @@
     -  openssl Version(1.0.2u)
     +  openssl Version(1.1.1k)
     -  python Version(2.7.8)
     +  python Version(3.8.11)

Currently this uses diff-like output but we will attempt to improve on this in the future.

One use case for `spack diff` is whenever a user has a disambiguate situation and cannot 
remember how two different installs are different. The command can also output `--json` in
the case of a more analysis type use case where we want to save complete data with all
diffs and the intersection. However, the command is really more intended for a command
line use case, and we likely will have an analyzer more suited to saving data

Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2021-07-30 00:08:38 -07:00
Zack Galbreath
e8f284bf52
ci: automatically prune the broken-specs list (#24809)
When a develop pipeline successfully finishes a `spack install`, check if
the spec that was just built is on the broken-specs list. If so, remove it.
2021-07-29 13:47:10 -06:00
Zack Galbreath
d7771f190f
Catch ConnectionError from CDash reporter (#24818)
* Catch ConnectionError from CDash reporter

Catch ConnectionError when attempting to upload the results of `spack install`
to CDash. This follows in the spirit of #24299. We do not want `spack install`
to exit with a non-zero status when something goes wrong while attempting to
report results to CDash.

* Catch HTTP Error 400 (Bad Request) in relate_cdash_builds()
2021-07-29 13:46:17 -06:00
sknigh
095f327f32
Update sst-elements and dependency packages (#25041)
* sst-elements: add optional support for flashdimmsim, dramsim3 and
  add new packages for each
* sst-dumpi: add version 7.1.0
* sst-core: autotools dependencies are required for all versions
* new package: dtc
* add error message redirect for +dumpi, otf, and otf2: these are not
  currently supported
2021-07-29 11:48:41 -07:00
Itaru Kitayama
a904418270
nest: add v3.0 and v2.20.1, removed previous versions (#24328)
Co-authored-by: Itaru Kitayama <itaru.kitayama@riken.jp>
2021-07-29 10:34:50 +02:00
Massimiliano Culpo
b42b0cd45a
Move build tests from GA to Gitlab (#25120)
Modifications:

- Remove the "build tests" workflow from GitHub Actions
- Setup a similar e2e test on Gitlab

In this way we'll reduce load on GitHub Actions workflows and for e2e tests will
benefit from the buildcache reuse granted by pipelines.
2021-07-29 09:08:32 +02:00
Brian Van Essen
adb507bdd9
Added support for using the Cray LibSci BLAS/LAPACK/ScaLAPACK library. (#25124) 2021-07-28 15:14:58 -07:00
Cyrus Harrison
db00cf24c0
add parmetis variant to conduit (#25127) 2021-07-28 15:09:19 -07:00
Satish Balay
c114cf019d
petsc: update config option logic for locating dependencies (#25074)
Primarily use --with-package-include, --with-package-lib options
(vs. --with-package-dir)
2021-07-28 14:09:54 -07:00
Chris White
7ea94d1103 add more directories to implicit link exclusion 2021-07-28 14:01:16 -07:00
iarspider
ace3753076
re2: addv2021-06-01 and 'shared' variant (#25121)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-07-28 19:07:12 +02:00
Michael Kuhn
d6cbaee16b
gcc: add v11.2.0 (#25125) 2021-07-28 17:02:40 +00:00
Rémi Lacroix
0d5e1c7db9
libxc: add v5.1.5 (#25123) 2021-07-28 18:42:05 +02:00
Houjun Tang
69464bf36f
pdc: add new package (#24762)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-07-28 18:31:25 +02:00
Dylan Simon
e3096e94b1
poppler: drop splash patch for 21.07.0 (#25032)
ENABLE_SPLASH configuration has been removed entirely after 21.06 so
patch is no longer necessary after #24931.  (Versions between 0.90.1 and
21.06 will likely still need a patch, and while it's not clear if this
patch is the right one, seems better to leave something in.)
2021-07-28 18:23:56 +02:00
Tim Moon
c9327649c0
nvshmem: set env variables instead of appending (#25095) 2021-07-28 16:07:24 +00:00
Tom Stitt
68f696af64
glvis: add v4.0 (#25045) 2021-07-28 17:51:53 +02:00
downloadico
737936d02c
octopus: add v10.5 (#25068) 2021-07-28 17:47:42 +02:00
Ethan Stam
a7ed20cb92
ParaView: disable VTK_MODULE_USE_EXTERNAL_ParaView_vtkcatalyst to avoid looking for external Catalyst_DIR (#25061) 2021-07-28 17:30:21 +02:00
Glenn Johnson
e29168ad02
gurobi: add v9.1.2 and extend python (#25064)
- add version 9.1.2
- set a license file
- set the license environment variable
- remove the download and license information out of the description so
  it does not show up in environment modules
- extend python and set python version constraints
- build gurobipy to be used in any compatible python, used for more
  extensive computations than the gurobi shell
- remove preexisting PYTHONPATH from gurobi.sh as the shell uses a
  built-in python, which will likely be different from "system" python
- add maintainer
2021-07-28 17:29:32 +02:00