Commit graph

3813 commits

Author SHA1 Message Date
Jonathan Wong
cb87edf230 Modified ipopt package to support build on ppc64le (#4561)
Added line in package.py to patch using ipopt_ppc_build.patch. The patch simply adds support in config.guess and Ipopt/config.guess to build ipopt on ppc64le.
2017-06-21 06:47:06 -05:00
Mark C. Miller
2525363c11 adding H5Z-ZFP; updating zfp to use choice variant for bit stream word size (#4466)
* adding H5Z-ZFP; updating zfp to use choice variant for bit stream word size

* fixing homepage url

* removed fortran error message...just build fortran if can, otherwise ignore
2017-06-21 06:46:14 -05:00
Jim Eliot
7c0a759a26 Fix for SAMRAI build debug spec bug (#4564) (#4565) 2017-06-21 06:38:27 -05:00
serbanmaerean
0fe9cb5d1c FFTW: remove search for IBM XL threaded compiler when compiler is not gcc (#4187)
* Added magma package

* Incorporated Serban's change

* fftw: patch configuration file to remove search for xlc_r compiler
when compiler not gcc

FFTW assumes there are only 2 compilers: gcc and IBM XL.  When
building threaded fftw, the configuration file is looking for
the threaded IBM XL's xlc_r compiler when the compiler is not gcc.
The PGI compiler is not gcc.
2017-06-20 16:47:24 -05:00
Audrey Thoma
bcb8615fb0 Add abyss package (#4555)
* abyss

* abyss: deleting attemped test from script

* abyss: adding new package abyss

* abyss: partially fixing mpi dependency issue

* abyss: added mpi provider conflicts
2017-06-20 16:34:42 -05:00
Christoph Junghans
12113c41e4 Features/votca (#4556)
* votca-csg: needs non-mpi version of gromacs

* votca-csg: fixed deps

* votca-moo: new package

* votca-ctp: new package

* votca-ctp: make flake8 happy
2017-06-20 15:34:17 -05:00
George Hartzell
e5560dfbde fontconfig should depend on gperf (#4551)
* Include depends_on for gperf

Sometime around 2.12.2 fontconfig acquired a build-time
dependency on `gperf` (this commit, I think:
59fd9960bbb58fd6257adb13ec0f918882149332).

This adds the dependency.

`gperf` is called in the `src/Makefile`, see line 907 of
`src/Makefile.in`.

* Only depend_on gperf if @2.12.2:

The gperf dependency *seems* to only be required when @2.12.2:.

Earlier releases do not check the arg type of the gperf lookup
function (which requires gperf) and are able to use pre-generated
files so gperf is not required at build time.
2017-06-20 12:46:49 -05:00
Mark C. Miller
ca9e6576db Fix veclibfort for gcc (#4548)
* fixes #967

* Version bump to 0.9.1

- Bugfixes for spack find
- 0.9.1 can read specs from current develop.

* Don't assume spack is in the path when building docs.

* fixing Makefile override of PREFIX and install w/gcc-6
2017-06-20 09:59:40 -05:00
Stas Sergienko
229886aa8f added py-dxchange and its dependencies dxfile,edffile,spefile,tifffile (#4534)
* added py-dxchange and its dependencies dxfile,edffile,spefile,tifffile

* fixed https in homepage of py-dxfile
2017-06-19 16:26:37 -05:00
Adam J. Stewart
9b89272ae0 Various updates to wget and dependencies (#4116)
* Various updates to wget and dependencies

* Add newer version of gnutls
2017-06-19 15:13:18 -05:00
Adam J. Stewart
cf2178f416 Overhaul CONVERGE installation and concretization (#4397) 2017-06-19 10:18:48 -05:00
Diana Bite
b12c0e0f87 fontconfig: Update to latest stable release (#4543) 2017-06-19 10:02:30 -05:00
Andrey Prokopenko
cbdee5faf7 votca-csg: fixing develop url (#4536)
Fix #4525.
2017-06-17 09:32:14 -05:00
Stas Sergienko
5c01fadc59 Added py-pybtex package (#4507)
* Added py-pybtex package

* added more dependencies to py-pybtex

* added run to py-latexcodec dependency
2017-06-16 12:45:30 -05:00
John Roberts
4bd05d0c52 Py ase (#4517)
* py-ase: Adding python package py-ase.

* py-ase: Adding Python package py-ase.

* py-ase: Shortened package description.

* py-ase: Splitting package description to multiple lines to avoid char count max.

* py-ase: Removing trailing whitespace. Local flake8 tests passed now that flake8 is working for me.
2017-06-16 12:44:12 -05:00
Stas Sergienko
09ff2afb78 added py-sphinxcontrib-bibtex and py-pybtex-docutils packages (#4520)
* added py-sphinxcontrib-bibtex and py-pybtex-docutils packages

* added dpendency py-ordereddict
2017-06-16 12:42:36 -05:00
Kyle Fernandes, né Jacobs
a8919b07ca Update intel* packages (#4528)
* Update intel-*  packages

* Update intel package
2017-06-16 12:18:25 -05:00
David Böhme
04c2a1caf4 Update Scalasca/Score-P/Cube/OTF2 (#4485)
* Update Scalasca/Score-P/OTF2/Cube. Should fix #4349#

* cube: Fix flake8 warnings

* cube, scalasca: Fix version range syntax for deps

* otf2: Fix version URL generation

* cube: Remove static URLs
2017-06-16 11:45:06 -05:00
Adam J. Stewart
60db73a3f5 Fix OpenMPI CUDA support (#4323)
* Fix OpenMPI CUDA support

* Remove --with-cuda-libdir flag, not a real flag

* Fix PGI and CUDA 7 support
2017-06-16 10:00:19 -05:00
Milton Woods
f6e3ad4d90 py-pillow: ensure that RPATH includes graphics libraries (#4522) 2017-06-16 08:43:18 -05:00
iulian787
fe7bf77afe oce changes for cgm (#4514)
* oce changes for cgm

cgm can be configured with oce, but oce needs
to have X11 enabled, because some libraries
(like TKCAF in occ/oce) gets built only of X11 is NOT disabled
so introduce a variant +X11 for oce, which is needed when
configuring cgm with oce(+X11)

* follow up review

simplify by removing the patch and different url paths
use append instead of extend, when necessary
make mpi true by default

X11 dependency is still to be addressed; it pulls in some opengl
library (on laptop nvidia seem to work, on virtual linux machine
mesa was good enough)
2017-06-16 08:29:59 -05:00
Stas Sergienko
c102be2144 Added package py-oset (#4500)
* Added py-oset package

* Added package py-oset

* changed homepage url
2017-06-15 13:50:48 -05:00
Stas Sergienko
503efb8881 added py-latexcodec package (#4509)
* Added py-latexcodec package

* removed url line from the file
2017-06-15 09:46:44 -05:00
Stas Sergienko
080314c68e added py-counter package (#4510) 2017-06-15 09:45:27 -05:00
Diana Bite
a9a7805626 openblas: Fix build on aarch64. (#4487)
- invoke make with the correct TARGET for aarch64
- foforce PILERDRIVER as openblas cannot correctly detect CPU on aarch64
- update url to more recent version
2017-06-15 06:38:24 -05:00
Adam J. Stewart
41e4a034ff Add latest version of JDK (#4317)
* Add latest version of JDK

* Use a more specific URL to get curl to work

* Remove failing unit test
2017-06-15 12:40:55 +02:00
Adam J. Stewart
dc911661ca Add missing doc variant to fenics package (#4473) 2017-06-15 12:35:56 +02:00
Mark C. Miller
27e6e8715e Adding initial AMReX package (#4467)
* adding initial amrex package

* adding missing fortran variant predicate

* adjusting description text

* adjusting as per @tgamlin guidance
2017-06-15 12:27:52 +02:00
Stas Sergienko
336e3e6a89 Added py-pywavelets package (#4496)
* Added py-pywt  package

* passes flake8 test

* renamed py-pywt to py-pywavelets
2017-06-15 11:51:52 +02:00
Jon Rood
6762714302 Nalu requires Trilinos with Exodus support (#4505)
* Disabling Exodus in Trilinos by default.

* Returning default of Exodus to true in Trilinos.
2017-06-15 11:31:03 +02:00
Adam J. Stewart
e627447417 Prefer vim to vi for default editor (#4230)
* vim > vi
* Allow which to accept multiple args
* Update __init__ to use which with multiple args
* Fix doc tests
2017-06-15 11:27:18 +02:00
Adam J. Stewart
ce11e78530 Add h5utils package (#4506) 2017-06-14 15:41:42 -05:00
Alicia Klinvex
f732598f51 Fix tpetra-related xsdk errors (#4501)
* Fix tpetra-related xsdk errors

Recent changes to the trilinos package broke the xsdk build.
xSDK explicitly disables tpetra, but packages depending on it
(such as ifpack2 and amesos2) are explicitly enabled by default
in the trilinos package.  This commit explicitly disables them
within the xsdk package.py.

* Disabled exodus in the xsdk build

See issue #4502 for details
2017-06-14 13:56:24 -05:00
Luigi Calori
daa5cf7e73 fix intltool_sbang issue #4191 (#4192)
* fix intltool_sbang issue #4191

* add per dep even if already depending on perl-xml-parser

* adding more comment, properly spaced
2017-06-14 13:24:01 -05:00
Michael Kuhn
1ec3c14d23 Improve qt (#4309)
- Introduce an opengl variant that is enabled by default. Disabling it
  allows building qt for X forwarding etc.
- Depend on fontconfig and freetype to make use of system fonts.
  Otherwise qt can not find any fonts.
- libx11 is required when libxcb is used.
- Set MAKEFLAGS to parallelize qmake compilation.
2017-06-14 13:13:39 -05:00
Nicolas Richart
f06c23ef42 Adding package namd (#4321)
* Initial version of the namd package

* Modified charm to consider compile against intel/intel-mpi

* Correction of namd to compile with intel-mkl and intel compiler

* Adding inclue64 in the prefix

* adding property for the build directory

* removing useless function build
2017-06-14 13:11:30 -05:00
Josh Asplund
bc2c4a14c2 Updates rose definition (#4411)
* Adds z3 package

* Adds binwalk package

* Updates spot package definition

* Updates rose package definition

* Modifications for code review

* Fixes string formatting

* Remove python version requirement
2017-06-14 12:43:50 -05:00
Adam J. Stewart
f4f2f25838 Added new package for py-rsa (#4494) 2017-06-14 10:35:10 -05:00
serbanmaerean
0e5fb26dc1 superlu-dist: don't use '_' symbols from BLAS for IBM XL compiler (#4486) 2017-06-14 00:10:51 -07:00
Geoffrey Oxberry
3025f9d303 ipopt 3.12.7 (#4490)
* ipopt: update version to 3.12.7
* ipopt: add +coinhsl option
* ipopt: add +metis option
2017-06-13 18:09:12 -07:00
Geoffrey Oxberry
6af44e63ad coinhsl 2014.01.17: new package (#4482) 2017-06-13 18:03:49 -07:00
Geoffrey Oxberry
56f7c85c93 metis: bugfix: make shared library build portable (#4489)
Fixes #4488. When compiling metis as a shared library, the package
used the syntax `-rpath=`, followed by a path. This syntax is
non-portable, so replace it using Spack's compiler rpath argument
property.
2017-06-13 17:59:25 -07:00
John Roberts
b802524517 visit: Added VisIt version 2.12.2 (#4495) 2017-06-13 18:17:51 -05:00
scheibelp
1e69d9d1a9 Override partial installs by default - part three (#4331)
* During install, remove prior unfinished installs

If a user performs an installation which fails, in some cases the
install prefix is still present, and the stage path may also be
present. With this commit, unless the user specifies
'--keep-prefix', installs are guaranteed to begin with a clean
slate. The database is used to decide whether an install finished,
since a database record is not added until the end of the install
process.

* test updates

* repair_partial uses keep_prefix and keep_stage

* use of mock stage object to ensure that stage is destroyed when it should be destroyed (and otherwise not)

* add --restage option to 'install' command; when this option is not set, the default is to reuse a stage if it is found.
2017-06-13 09:15:51 -07:00
Massimiliano Culpo
9defe2c1c2 espresso: fixed compilation for 6.1 (elpa) and added support for hdf5 (#4483)
* espresso: fixed compilation for 6.1 (elpa) and added support for hdf5

* espresso: addressed items in @davydden review

* espresso: fixed behavior for espresso@:5.4.0
2017-06-13 10:22:12 -05:00
serbanmaerean
df6d8d913b Fix/mumps (#4453)
* Added magma package

* Incorporated Serban's change

* mumps: Fix compiler error with IBM XL

Split the patching between v 5.0.2 and 5.1.1
2017-06-13 08:09:59 -05:00
Michael Kuhn
181fd95057 Fix building shared libraries for gmp (#4464)
If specific compiler flags are set, gmp will not build a shared library,
causing failures further down the line.
2017-06-13 08:06:44 -05:00
Diana Bite
d450e4a93b czmq: Fix invocation when building with clang. (#4479)
Also bump to latest stable version.
2017-06-13 07:43:54 -05:00
Adam J. Stewart
14aa3b63e3 Add list_url for packages from http://ab-initio.mit.edu/ (#4471) 2017-06-12 09:48:20 -05:00
Adam J. Stewart
0de653ff01 Add an installcheck phase to MakefilePackage (#4476)
* Add an installcheck phase to MakefilePackage

* Minor changes to ESMF
2017-06-12 09:47:46 -05:00