Commit graph

34927 commits

Author SHA1 Message Date
Tom Payerle
00fe864321
cgal: Add version 5.6 (#42277)
Needed for latest version of sfcgal
2024-01-25 11:36:34 -08:00
Adam J. Stewart
3df720e909
py-lightly: add v1.4.26 (#42279) 2024-01-25 11:35:15 -08:00
Alberto Invernizzi
02a6ec7b3c
CMake: disable Package Registry (#42149)
CMake may write and read from `~/.cmake` through `export(...)` and read `find_package(...)` respectively. We don't want this as it may influence the build in a non-deterministic way, so disable it for all versions of `cmake`.
2024-01-25 19:04:03 +01:00
Greg Becker
d3c1f7a872
Fix using sticky variants in externals (#42253) 2024-01-25 17:22:22 +01:00
Robert Cohn
84568b3454
spack find mpiexec for impi (#42284) 2024-01-25 08:21:50 -08:00
Harmen Stoppels
2721b4c10d
llvm: disable libomptarget AMDGPU plugin (#42265)
Fixes CI on develop
2024-01-25 08:43:29 +01:00
Jason Verley
31ed39303c
Update Xyce and Trilinos recipes (#42194)
* Trilinos: Add AMD to SuiteSparse TPL list

When Trilinos is built with SuiteSparse support, it should enable AMD as
one of the TPLs. It was previously enabling only UMFPACK. The Xyce
package uses AMD (but not UMFPACK).

* Xyce: Add 7.8 release and various improvements

In addition to adding the latest Xyce release (7.8), all the earlier
releases were deprecated, with the exception of 7.7.

The Trilinos specification was updated to remove unneeded packages,
explicitly enable all needed packages, and specify additional
do-not-build packages.

The serial build is now the default, with MPI still being an option.

I also epanded the explanation for one of the patches; and, finally, I
took the opportunity to update the Xyce description to better match the
current Xyce README description.
2024-01-24 10:46:14 -08:00
Richard Berger
6bddecbf28
SLURM/MPICH fixes (#42225)
* slurm: add new versions

* mpich: apply hostlist_t patch for newer Slurm versions

* [@spackbot] updating style on behalf of rbberger

---------

Co-authored-by: rbberger <rbberger@users.noreply.github.com>
2024-01-24 10:45:23 -08:00
Harmen Stoppels
54aebbb587
generate modules of non-roots during spack install of env (#42147)
Fixes a bug where Spack did not generate module files of non-roots during
spack install with an active environment.

The reason being that Environment.new_installs only contained roots.

This PR:

Drops special casing of automatic module generation in post-install hooks
When `use_view`, compute environment variable modifications like always, and
applies a view projection to them afterwards, like we do for spack env activate.
This ensures we don't have to delay module generation until after the view is
created.

Fixes another bug in use_view where prefixes of dependencies would not be
projected -- previously Spack would only temporarily set the current spec's prefix.
Removes the one and only use of the post_env_write hook (but doesn't drop it to
make this backportable w/o changes)
2024-01-24 09:45:58 -08:00
Mikael Simberg
e46f3803ad
pika: Add 0.22.0 (#42263) 2024-01-24 10:32:58 -07:00
Harmen Stoppels
28b7f72b96
set_packge_py_globals: only set pure build related globals on the root in build context (#42215)
Previously `std_args` was called on non-roots in a build context, which is redundant, and also leads to issues when `std_args` expects build deps of the `pkg` to be installed.
2024-01-24 10:14:13 +01:00
Jonathon Anderson
61421b3a67
hpctoolkit: Add build_system=meson (#42059)
HPCToolkit `develop` now can optionally be built via Meson. This PR adds the `build_system=(autotools|meson)` variant and splits the build-system-dependent pieces into `AutotoolsBuilder` and `MesonBuilder`. The default is to build with `autotools`.

As of writing, the Meson is simply a wrapper around the original Autotools build, hence the build requires a native file listing install prefixes of all dependencies (which are internally mapped to `--with-{pkg}={prefix}` arguments for `./configure`). This is an unconventional but temporary state of affairs until the build system is fully ported to Meson and conventional dependency acquisition techniques like `pkg-config` and `cmake` are practically available.
2024-01-23 13:20:10 -08:00
Sean Koyama
acbf0d99c4
gobject-introspection: fine-grained glib dependencies, add 1.78.1 (#42222) 2024-01-23 22:05:11 +01:00
Tamara Dahlgren
e7be8160dd
Environments: Fix environment configuration (#42058)
* Environments: fix environment config
* Don't change the lockfile manifest path
* Update activate's comments to tie the manifest to the configuration
* Add spec_list override method
* Remove type checking from 'activate' since already have built-in check
* Refactor global methods tied to the manifest to be in its class
* Restore Environment's 'env_subdir_path' and pass its config_stage_dir to EnvironmentManifestFile
* Restore global env_subdir_path for use by Environment and EnvironmentManifestFile
2024-01-23 13:01:40 -08:00
jmlapre
2af6597248
pigz: add v2.8 (#42227) 2024-01-23 12:55:32 -08:00
eugeneswalker
a4444e4107
tau ^intel-oneapi-mpi: fix prefix specification (#42248) 2024-01-23 12:54:08 -08:00
Loris Ercole
4c86ecc531
autodock-gpu: build with the specified cuda_arch (#42244)
The CUDA target should be specified at build time, otherwise
by default `autodock-gpu` will be built for compute capabilities
52, 60, 61, 70, which may cause errors on unsopported cards.
2024-01-23 12:52:38 -08:00
m-shunji
890a46c071
cosma: fix to build with fujitsu-ssl2 (#42230) 2024-01-23 12:51:29 -08:00
m-shunji
8999b0c178
elpa: fix to build with fujitsu compiler (#42231) 2024-01-23 12:41:59 -08:00
Massimiliano Culpo
a68fcb2fb8
cp2k: add a separate MakefileBuilder (#42130) 2024-01-23 21:39:40 +01:00
Alex Richert
84868b57c7
Add v5.0.0 to ip (#42228)
* Add v5.0.0 to ip
* don't require test target for ip@3
2024-01-23 12:09:32 -08:00
Juan Miguel Carceller
087bf70979
edm4hep: change master to main (#42246)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-01-23 12:04:48 -08:00
James Beal
039c343d0a
Add missing dependency for vcftools (#42047)
* Add missing dependency
* Change dependency to virtual package
   As suggested :)

---------

Co-authored-by: James Beal <jb23@sanger.ac.uk>
2024-01-23 11:01:24 -08:00
eugeneswalker
11abd94c04
turbine ^intel-oneapi-mpi: fix prefix specification (#42247) 2024-01-23 11:39:05 -07:00
Loris Ercole
b3d0f19fe7
spglib: add tests variant and cmake requirement (#42242)
Fixes #42241
2024-01-23 11:38:42 -07:00
Rémi Lacroix
9be7f2328f
Spglib: update the homepage (#42243)
The previous link gives a 404 error.
2024-01-23 07:54:01 -07:00
Harmen Stoppels
40b8dfceed
lapackpp: new version (#42245) 2024-01-23 14:36:37 +01:00
Jack Morrison
41b20aec2b
libfabric: Add version 1.20.1 (#42219) 2024-01-23 05:19:00 -07:00
Simon Pintarelli
98109ce3ea
Change cosma and costa default to +shared (#42238) 2024-01-23 04:33:32 -07:00
Christoph Junghans
61cd877145
votca: add v2024 (#42224) 2024-01-23 04:33:15 -07:00
Massimiliano Culpo
66813460c0
Add syntactic sugar for "strong preferences" and "conflicts" (#41832)
Currently requirements allow to express "strong preferences" and "conflicts" from
configuration using a convoluted syntax:
```yaml
packages:
  zlib-ng:
    require:
    # conflict on %clang
    - one_of: ["%clang", "@:"]
    # Strong preference for +shared
    - any_of: ["+shared", "@:"]
```
This PR adds syntactic sugar so that the same can be written as:
```yaml
packages:
  zlib-ng:
    conflict:
    - "%clang"
    prefer:
    - "+shared"
```
Preferences written in this way are "stronger" that the ones documented at:
- https://spack.readthedocs.io/en/latest/packages_yaml.html#package-preferences
2024-01-22 13:18:00 -08:00
Harmen Stoppels
ed9d495915
environment.py: drop early exit in install (#42145)
`spack install` early exit behavior was sometimes convenient, except
that it had and has bugs:

1. prior bug: we didn't mark env roots of already installed specs as
   explicit in the db
2. current bug: `spack install --overwrite` is ignored

So this PR simplifies by letting the installer do its thing even if
everything is supposedly installed.
2024-01-22 20:39:12 +01:00
Annop Wongwathanarat
7580ba4861
Revert "acfl: truncate version version number" (#42214) 2024-01-22 10:28:22 -08:00
renjithravindrankannath
c673979fee
Bump up the version for ROCm-6.0.0 (#42026)
* Bump up the version for ROCm-6.0.0
* Adding patch files
* Style check failure fix
* Style check fixes
* Style check error fixes
* Patch to remove hipblas client file installation in 6.0
* Patch need to be applied on all 5.7 relases
* 6.0 update for math libs and other packages, new github url etc
* Correct package-audit failures
* Correcting shasum for rocfft patch and limiting patch in rocblas
* Reverting updates in rocprofiler-dev due to ci-gitlab failure
* Fixes for ci-gitlab failure due to disabling hip backward compatibilit
* Adding patch file to Change HIP_PLATFORM from HCC to AMD and NVCC to NVIDIA
* Use the gcnArchName inplace of gcnArch as gcnArch is deprecated from rocm-6.0.0
* Patches to fix magma and blaspp build error with rocm 6.0.0
* Patch for mfem and arborx for rocm 6.0
* Style check error fix
* Correcting style check errors
* Uodating dependent version
* Update for petsc to build with rocm 6.0
  Need reverting-operator-mixup-fix-for-slate.patch for rocm 6.0
* Reverting the change in url for 2.7.4-rocm-enhanced
* hip-tensor 6.0.0 update
2024-01-22 10:19:28 -08:00
Wouter Deconinck
7acd5bdc7f
gaudi: new version 37.2 (#42210)
No major changes, https://gitlab.cern.ch/gaudi/Gaudi/-/compare/v37r1...v37r2?from_project_id=38&straight=false
2024-01-22 09:45:43 -08:00
Adam J. Stewart
3a4800754e
py-keras: add v3.0.4, v3.0.3 (#42206)
* py-keras: add v3.0.3
* py-keras: add v3.0.4
2024-01-22 09:31:45 -08:00
Wouter Deconinck
72f8611d3e
acts: new version 32.0.0 (#42207)
* acts: new version 32.0.0
  No major build system changes, see [diff](https://github.com/acts-project/acts/compare/v31.2.0...v32.0.0). Summary of changes:
  - updated actsvg version requirement
  - MLpack dependency removed as of 32.0.0 (https://github.com/acts-project/acts/pull/2863)
* actsvg: new version 0.4.39 (new variant web)
* [@spackbot] updating style on behalf of wdconinc

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2024-01-22 09:29:19 -08:00
Wouter Deconinck
a0cd63c210
dd4hep: new version 1.27.2 (#42211)
New bugfix version, without any major changes, https://github.com/AIDASoft/DD4hep/compare/v01-27-01...v01-27-02.
2024-01-22 09:10:02 -08:00
kwryankrattiger
2d9c6c3222
CMakePackage pass python hints automatically (#42201)
This commit ensures that CMake packages that also have Python as a build/link dep get a couple defines for the Python path so that CMake's builtin `FindPython3`, `FindPython`, `FindPythonInterp` modules can locate Python correctly.

The main problem with those CMake modules is that they first search for Python versions known at the time of release, meaning that old CMake maybe find older system Python 3.8 even though Python 3.11 comes first in `CMAKE_PREFIX_PATH` and `PATH`.

Package maintainers can opt out of this by overriding the `find_python_hints = False` attribute in the package class.
2024-01-22 16:31:16 +01:00
Harmen Stoppels
b28692dc72
repo.py: pass package name not fully qualified package name (#42217) 2024-01-22 14:44:13 +00:00
Maciej Wójcik
dee0f138b8
py-nglview: add new package and dependency (py-versioneer-518) (#42079)
* Add nglview package

* Use slightly older version

* py-nglview: Correct py-versioneer version

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-nglview: Correct version of py-jupyter-packaging dependency

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Add py-versioneer-518 package

* py-versioneer-518: Correct version

* py-nglview: Numpy is needed during build for the tests

* py-nglview: dependency needed for tests

* py-nglview: Correct dependency types

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-01-22 05:39:36 -06:00
Matthias Wolf
91ff20cf7a
py-bluepyemodel: add newer versions (#42188)
* py-bluepyemodel: add newer versions

* re-add license marker
2024-01-21 11:54:35 -06:00
Matthias Wolf
1084d3c261
py-nexusforge: add new version, fix dependencies (#42189) 2024-01-21 11:52:43 -06:00
Maciej Wójcik
124b41c1a0
snakemake: add new versions (#42074)
* py-toposort: Add newer versions

* snakemake: Add more recent versions with dependencies

* Typo in copyright

* Reorder dependencies, remove comments

* Whitespace
2024-01-21 11:18:19 -06:00
snehring
d282ec8179
py-tesorter: requires setuptools (#42124) 2024-01-21 11:17:52 -06:00
eugeneswalker
58997f7f9a
e4s ci: use latest intel/hpckit 2024 based image (#41437)
* e4s ci: use latest intel/hpckit 2024 based image

* use latest container image: ecpe4s/ubuntu22.04-runner-amd64-oneapi-2024.0.0:2023.12.01

* comment out failing specs

* update to use patched container

* remove generalized package preference for intel-oneapi-mkl@2023

* change packages commented out
2024-01-20 20:17:44 -08:00
eugeneswalker
104a2b5e11
e4s ci: switch to neoverse_v2 target (#42115) 2024-01-20 16:28:29 -08:00
Robert Cohn
e198c13161
[kokkos] make dpl dependence explicit (#42128) 2024-01-20 16:26:21 -08:00
Wouter Deconinck
10b4481ba5
motif: patch to ensure main function (fixes #29594) (#42174) 2024-01-21 00:36:20 +01:00
Sam Grayson
4c1fbc9fdb
libtool: add build dep on findutils (#42199) 2024-01-20 14:58:06 -07:00