Commit graph

8369 commits

Author SHA1 Message Date
t-karatsu
adffb2bff4 libtool: execute autoreconf at ver.2.4.2 (#11913)
Version 2.4.6 did not require running autoreconf, so this only does
autoreconf for 2.4.2
2019-07-03 18:04:29 -07:00
shanedsnyder
902dcfd194 libfabric package: add version 1.8.0 (#11918) 2019-07-03 17:30:25 -07:00
Milton Woods
fae14bff21 py-cf-units: new package (#11891)
* py-cf-units: new package

* py-cf-units: download from pypi.io

* py-cf-units: include py-pytest-runner as build dep

* py-cf-units: remove empty build_args function

* py-cf-units: fix for flake8

* py-cf-units: indent docstring

* py-cf-units: remove excess spaces

* py-cf-units: list master branch ahead of numeric versions

* py-cf-units: remove extension keyword from version
2019-07-03 19:20:34 -04:00
Alberto Chiusole
f3bf89ebfe OpenMPI: add support for pbs/tm at configure. (#10620) 2019-07-03 14:07:51 -07:00
Justin M Wozniak
28949787e9 turbine: Better auto-detection of R location (#11711)
If R is provided by the system with a module (i.e. registered in
packages.yaml with a "module" entry) and has no discernible prefix,
this allows turbine to still make use of R.
2019-07-03 11:24:20 -07:00
Milton Woods
ea1df6a9b4 py-pyke: new package (#11894)
* py-pyke: automatic python program generator

* py-pyke: expand the package docstring
2019-07-02 15:58:14 -04:00
Milton Woods
48bfece55e py-pyugrid: unstructured grids in netcdf files (#11900) 2019-07-02 15:56:18 -04:00
ktsai7
229ba28ad5 Add llvm as deps when static analyzer is enabled (#11888)
* dep llvm if static analyzer
dep caliper if caliper

* fix typo

* adding variants for toggles
2019-07-02 11:45:13 -06:00
Toyohisa Kameyama
f1592e339d portcullis package: remove -m64 on aarch64. (#11905)
GCC on aarch64 dose not support -m64. This patch removes the -m64
flag if target is aarch64.
2019-07-02 10:42:06 -07:00
Phil Carns
2709f948fa opa-psm2 package: correct installation prefixes and add 11.2.77 (#11658)
This PR corrects a problem with the opa-psm2 package. It was
installing headers into <prefix>/usr/include and libraries into
<prefix>/usr/lib instead of <prefix>/include and <prefix>/lib.
The extra level of usr/ subdirectories causes dependent packages
like libfabric to fail to build.
2019-07-02 10:34:58 -07:00
Mark Olesen
5fd3b5acda openfoam: rename openfoam-com to openfoam (#11876)
The original packaging, with openfoam as a virtual and with
openfoam-com, openfoam-org and openfoam-extend as
providers, adds an obfuscation layer without any benefit.

- Rename `openfoam-com` to `openfoam`, and remove the 
  `openfoam` virtual package.
2019-07-01 22:54:36 -07:00
Todd Gamblin
515b4045e9 specs: remove parse_anonymous_spec(); use Spec() instead
- `parse_anonymous_spec()` is a vestige of the days when Spack didn't
  support nameless specs.  We don't need it anymore because now we can
  write Spec() for a spec that will match anything, and satisfies()
  semantics work properly for anonymous specs.

- Delete `parse_anonymous_spec()` and replace its uses with simple calls
  to the Spec() constructor.

- make then handling of when='...' specs in directives more consistent.

- clean up Spec.__contains__()

- refactor directives and tests slightly to accommodate the change.
2019-07-01 18:45:44 -07:00
Milton Woods
1ad9f6268b New packages: libmo-unpack and py-mo-pack (#11895)
* libmo-unpack: package to encode and decode UM fields
* py-mo-pack: python interface for libmo-unpack
2019-07-01 18:24:45 -07:00
Justin S
781a115656 New package: r-gwmodel (starting at 2.0-9) (#11887) 2019-07-01 18:14:29 -07:00
Justin S
196886e708 New package: r-spatialreg (starting at 1.1-3) (#11886) 2019-07-01 18:13:06 -07:00
Justin S
a7cd7fdcd4 New package: r-spdata (starting at version 0.3.0) (#11883) 2019-07-01 18:11:16 -07:00
Milton Woods
711a80832a New package: py-nc-time-axis (#11898) 2019-07-01 18:07:57 -07:00
Glenn Johnson
b66c296562 py-markdown package: update dependency version range (#11908)
The python dependency specifies that 2.7 or 2.8 are allowed when in
fact it should specify a version range (anything between 2.7 and 2.8,
inclusive).
2019-07-01 17:52:41 -07:00
Sameer Shende
4d0926464c mpich: wrapperrpath variant allows disablement of RPATH usage in mpicc
Added a wrapperrpath variant to mpich that defaults to `True`.

Users can set this to `False` (e.g., spack install mpich~wrapperrpath) to
disable the wrapper RPATHs.  This makes it easier to replacing an MPICH
installation in a container with an MPICH for the host system,
e.g., Cray MPICH with Shifter on Cori, Intel MPI, MVAPICH2, etc.

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2019-07-01 15:09:40 -07:00
Toyohisa Kameyama
54de03548b planck-likelihood: remove -m64 on ARM (#11902) 2019-07-01 10:48:45 -07:00
Axel Huebl
1b3c11e793 ADIOS2: v2.4.0 (#11904)
Add the latest release of ADIOS2.
2019-07-01 13:47:31 -04:00
Milton Woods
6856972745 tk: avoid search for X headers and libraries (#11892) 2019-07-01 13:47:04 -04:00
t-karatsu
8ca5c3685a camellia: fix hdf5 dependency (#11810)
* camellia: fix hdf5 dependency

* camellia: Add comment
2019-07-01 13:40:53 -04:00
Justin S
b517be2c68 r-spacetime: new package at 1.2-2 (#11885) 2019-07-01 13:39:15 -04:00
Milton Woods
0f703b7e81 py-netcdf4: depend on hdf5+hl (#11893) 2019-07-01 15:38:35 +02:00
Dr Owain Kenway
441401bb8b llvm: don't build CppBackend for flang versions of llvm (#11841)
The version of LLVM used by flang is new enough that CppBackend doesn't exist.  Unfortunately, `flang-xxxxxxxx` is seen as < `3.9.0` by the version check.  

* add a special case for `flang` versions.
2019-06-30 17:04:29 -07:00
Oliver Breitwieser
cf76a143a2 libtomlc99: Update version
The PR for shared libraries has been merged upstream -> add new version.
2019-06-30 16:02:08 -07:00
Christoph Junghans
7f2e364fa1
legion: added recent releases (#11889) 2019-06-29 07:12:24 -06:00
Justin S
7f6266eef6 r-intervals: new package at 0.15.1 (#11884) 2019-06-28 19:42:55 -04:00
Carson Woods
5873beb83f qthreads package: make hwloc dependency optional and add version 1.14 (#11780) 2019-06-28 11:43:06 -07:00
Andreas Baumbach
5e9437866b New package: libtomlc99 (#11811) 2019-06-28 11:16:34 -07:00
Hironori-Yamaji
d5402147f0 bib2xhtml: replace version and change the download url (#11837)
The old version was no longer available for download
2019-06-28 11:03:54 -07:00
Matthieu Dorier
46c1513296 PMDK package: requires ncurses dependency (#11868) 2019-06-28 10:15:06 -07:00
Toyohisa Kameyama
d8f4e0a565 OTF package: use autotools. (#11873) 2019-06-28 10:13:21 -07:00
Toyohisa Kameyama
ae8710fa36 blast-plus package: remove --with-64 on ARM. (#11877)
This configure option is not supported on ARM
2019-06-28 10:11:04 -07:00
Michael Kuhn
ac76e4692f likwid package: Fix build with version 4.3.4 (#11878) 2019-06-28 10:05:38 -07:00
ktsai7
d48226b260 Update package.py (#11872) 2019-06-28 09:39:59 -06:00
Michael Kuhn
d2de78ab00 fenics, llvm: Fix package names being overriden (#11879)
Setting name within the package class allows overriding the package
name, which both packages do using several for loops.

Fixes #11789
2019-06-28 15:59:19 +02:00
Christoph Junghans
d6ecc29e4b
portage: add v1.2.2 (#11842)
* portage: add v1.2.2

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* flake8
2019-06-28 06:39:26 -06:00
Toyohisa Kameyama
ff877a567e Gotcha package: fixed to build on ARM. (#11840)
Apply patch to current version which has not yet been merged in the
upstream package repo.
2019-06-27 15:34:11 -07:00
Derick Huth
81db89b5e7 New packages: Chill and IEGenLib (#11406)
* Add Chill package
* Add IEGenLib package, a dependency of Chill
2019-06-27 13:41:06 -07:00
Michael Kuhn
f5f2b05c5b pkgconf: Add 1.6.1 (#11863) 2019-06-27 22:15:04 +02:00
Christoph Junghans
8a51215c36
bml: add v1.3.1 (#11856) 2019-06-27 10:57:09 -06:00
Hironori-Yamaji
c48b67ccd7 f90cache: change the download url (#11838)
* f90cache: change the download url

* f90cache: added the download url for ver 0.99
2019-06-27 12:55:48 -04:00
Hironori-Yamaji
9ed4db6eea tcsh: change the download url, add version 6.21.00 (#11836)
* tcsh: change the download url, add version 6.21.00

* tcsh: change the download url

* tcsh: Fix checksum for 6.20.00
2019-06-27 12:53:43 -04:00
Mark Olesen
0119812781 Update openfoam (#11866)
* OpenFOAM: rationalize architecture options

- older versions of OpenFOAM had WM_ARCH_OPTION to choose a 32-bit
  build on 64-bit architectures. This is not exactly relevant anymore
  and has now been largely removed from OpenFOAM.

- simultaneously the newest version of OpenFOAM has rationalized the
  handling of special settings for KNL by rolling these into the
  compiler options. We now do the same thing here in spack.

  1. Reuse the internal variable arch_option to convey processor-specific
     optimizations and add these into the C++OPT=... statement.
  2. Drop spack support for configuring a 32-bit build on 64-bit
     hardware.

These changes can also be applied to older OpenFOAM versions, and to
various OpenFOAM forks without issue.

* update openfoam versions. New release 1906, patched 1812 version.
2019-06-27 11:14:33 -05:00
Michael Kuhn
eb00436ec8 font-util: Add missing mkfontdir build dependency (#11865)
Some of the fonts now included in font-util need mkfontdir to build.
2019-06-27 15:53:05 +02:00
Michael Kuhn
5669144d22 Fix pkgconfig dependencies (#11864)
pkgconfig is the correct virtual dependency.
2019-06-27 14:56:42 +02:00
Toyohisa Kameyama
1c779608b2 cbtf-krell: fixed to build on ARM. (#11859) 2019-06-27 11:55:15 +02:00
Toyohisa Kameyama
977b2621f9 font-util: fix fontname. (#11860) 2019-06-27 11:54:23 +02:00
Satish Balay
85372ae102 petsc: add version 3.11.3 (#11857) 2019-06-27 07:02:03 +02:00
Michael Kuhn
75adb54d51 cdo: Remove obsolete patch (#11854)
Commit ea3e1521fe removed version
1.9.7rc2, making the patch for gcc@9 obsolete.
2019-06-26 19:36:41 -05:00
Michael Kuhn
0ef3b4c578 ncl: Fix build (#11855)
ncl does not build with newer versions of gdal (or rather proj). This
also needs a small change to gdal, otherwise we end up with both proj@5
and proj@6 in the spec.
2019-06-26 19:36:29 -05:00
Greg Becker
a0f2d6a8b9 Make yaml-cpp build with libc++ (#10504)
- Separate `yaml-cpp` tests into variant
- Make conflict between `yaml-cpp` tests and `libc++` explicit
2019-06-26 14:29:09 -07:00
ktsai7
ba5530bb42 added min version for gasnet and legion (#11853)
* added min version for gasnet and legion

* Update package.py

* Update package.py

* Update package.py
2019-06-26 14:46:18 -06:00
Douglas Duckworth
27b07811dd RELION package: add version 3.0.6 (#11851) 2019-06-26 09:57:14 -07:00
Toyohisa Kameyama
e49c101f05 X11fonts: use autotools for new architecture host (#11785)
* Remove individual font-* packages and add them as resources of the
  font-util package
* Update font-util package to Autotools-based package, and call
  autoreconf to regenerate the old configure script
* Add font-adobe-utopia-type1
2019-06-26 08:26:37 -07:00
Adam J. Stewart
5c5d6cad44 Rename py-pytables -> py-tables (#11847) 2019-06-25 21:32:49 -04:00
Satish Balay
ef48219f15 remove binary file that got added inadvertently via #11828 (#11848) 2019-06-25 21:31:36 -04:00
Christoph Junghans
718af821d1 pfunit: fixed a typo (#11843) 2019-06-25 14:06:52 -04:00
Chuck Atkins
f20c97168d
gnutls: workaround guile build error on macos (#11751) 2019-06-25 13:08:28 -04:00
jthies
6bbc7e8d9b phist can't be compiled with gcc older than 4.9.2 (#11677)
* phist can't be compiled with gcc older than 4.9.2
2019-06-25 12:53:21 -04:00
Ben Morgan
531114cd6c
fmt: Add version 5.3.0 with cxxstd variant support (#11799)
* fmt: Add cxxstd variant, plus cmake/c++ patches

Spack supported versions of fmt default to C++11 for versions
less than 5, C++14 greater than 5, with fmt implementing
fallbacks to whatever compiler supports.

To give better ABI compatibility and use of newer standards, provide
a `cxxstd` variant defaulting to 11 with 98-17 options. Use cmake_args
to set CMAKE_CXX_STANDARD as appropriate, plus use of `FMT_USE_CPP11`
option for C++98 builds. Use `conflicts` to disable use of certain
standards in versions that don't support, or fail the build, with
those standards.

Add patches to unify use of `CMAKE_CXX_STANDARD` in 3.0 versions,
remove hard-coding of compiler flags in `fmt-config.cmake`, and
prevent use of C++11 features in 4.1.0 when in supported C++98
mode.

Default to not building documents as no dependency on Doxygen is
yet present, and they are not part of the "all" build.

* Use CMake to enforce C++ standard support

Fail configure step if fmt tries to build with a cxxstd variant
not supported by the compiler (or known to CMake).

* fmt: New version 5.3.0
2019-06-25 12:01:31 +01:00
rvinaybharadwaj
fa563f0f55 Bumping-up miniVite to version 1.1 (#11828)
* Bumping-up miniVite to version 1.1

* Keeping both version of miniVite

* Changed to >=
2019-06-24 19:41:01 -06:00
Justin S
5b3f196bc2 New package: Rodinia (starting at 3.1) (#11650) 2019-06-24 18:32:46 -07:00
Carson Woods
ad14432e66 UCX package: add versions 1.5.1/1.5.2 (#11832) 2019-06-24 18:21:06 -07:00
Carson Woods
f10b806bde Singularity package: add version 3.2.1 (#11833) 2019-06-24 18:20:23 -07:00
Denis Davydov
8e89a82076 clamav: add new package (#11818)
* clamav: add new package

* fix flake8

* remove --dsable lines
2019-06-24 19:47:15 -04:00
Gregory Lee
16ff38b784 add glx variant to libepoxy (#11814) 2019-06-24 17:57:17 -04:00
Glenn Johnson
c575cc46db The py-pytables package depends on hdf5-blosc (#11823)
* The py-pytables package depends on hdf5-blosc

* Further modifications to py-pytables package

The 3.2.2 version of py-pytables should still build with internal blosc.
The issue with locking in a multithreaded environment has been
fixed/worked around in version 3.3.

Also, add bzip2 and lzo variants.
2019-06-24 17:56:51 -04:00
Satish Balay
1ec3d78441 hypre: superlu-dist-link-2.15.0.patch is now in hypre@develop (#11829) 2019-06-24 17:55:04 -04:00
Andreas Baumbach
b39a992528 add new package py-absl-py (#11812)
* add new package py-absl-py

Change-Id: I248d30e0a3e5e05d9ea4027d97a85545c63d1125

* Update package.py

* Update package.py

* Update package.py

* Update package.py
2019-06-23 17:33:36 -04:00
Andreas Baumbach
2687af2c53 New package py-astor (and test dependency py-astunparse) (#11813)
* add package py-astor

Change-Id: I2f6becfb5e9771170bf2df5eb629920e1c0998d7

* add new package py-astunparse

Change-Id: Id2d3e8dec28e720ed1cb121dad0d1a405c27ca29

* Update package.py

* Update package.py

* Update package.py
2019-06-23 17:33:22 -04:00
Christoph Junghans
d65e6ad7e3 hypre: add v2.16.0 (#11821)
* hypre: add v2.16.0

* update checksums

* hypre: xsdk-0.2.0 tag is missing on the new repo
2019-06-23 17:33:05 -04:00
Neil Flood
681245c7ed awscli: new package (#11796)
* awscli: new package

* More precise py-pyyaml version dep, as per setup.py
2019-06-23 14:54:48 -04:00
Adam J. Stewart
9c54d8ef6c
r-sf may not support PROJ.6 (#11767)
* r-sf may not support PROJ.6

* Add comment explaining dep
2019-06-23 11:35:33 -05:00
Sinan
c83f8a425d new package/py-blessed (#11656)
* new package/py-blessed

* make flake8 happy

* fix docstring

* tab to spaces

* Update var/spack/repos/builtin/packages/py-blessed/package.py

specify dependency version.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-blessed/package.py

specify dependency version

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* add setuptools as depedency
2019-06-22 17:05:03 -05:00
Gerasimos Chourdakis
98d21193ff precice: add version 1.5.1 (#11809) 2019-06-21 07:56:35 -04:00
Toyohisa Kameyama
e19d7b9a49 exonerate use autotools. (#11805) 2019-06-21 07:55:29 -04:00
Toyohisa Kameyama
1827b4c5cb mpileaks: use autotools. (#11808) 2019-06-21 07:55:04 -04:00
Toyohisa Kameyama
9955b15f4e mpe2 use autotools and add libx11 dependency. (#11807) 2019-06-21 07:54:51 -04:00
Gregory Lee
894d01e482 converting to launchmon to autotools package (#11794) 2019-06-21 07:47:42 -04:00
Valentin Reis
e6264030d7 New packages: nrm and libnrm (#11777)
Also add new py-warlock, py-jsonpatch, and py-jsonpointer packages as
dependencies of nrm.
2019-06-20 19:21:44 -07:00
Mark W. Krentel
a76bacd594 boost: add variant for symbol visibility (#11801)
Starting with 1.69.0, boost added a bjam option for the default symbol
visibility.  Up to 1.68.0, the value was always 'global'.  1.69.0
changed the default to 'hidden' but added an option.

Most packages will work with hidden and won't notice.  But some
packages may discover that an interface that they rely on is now
hidden and inaccessible.

https://boostorg.github.io/build/manual/develop/index.html#bbv2.builtin.features.visibility
2019-06-20 17:43:25 -04:00
Justin S
686eaff30c subread: add 1.6.4 (#11800) 2019-06-20 13:54:20 -05:00
Peter Scheibel
284ae9d1cc
Resources: use expanded archive name by default (#11688)
For resources, it is desirable to use the expanded archive name of
the resource as the name of the directory when adding it to the root
staging area.

#11528 established 'spack-src' as the universal directory where
source files are placed, which also affected the behavior of
resources managed with Stages.

This adds a new property ('srcdir') to Stage to remember the name of
the expanded source directory, and uses this as the default name when
placing a resource directory in the root staging area.

This also:

* Ensures that downloaded sources are archived using the expanded
  archive name (otherwise Spack will not be able to determine the
  original directory name when using a cached archive).
* Updates working_dir context manager to guarantee restoration of
  original working directory when an exception occurs
* Adds a "temp_cwd" context manager which creates a temporary
  directory and sets it as the working directory
2019-06-20 11:09:31 -07:00
Adam J. Stewart
4858d8c275 Add GDL 0.9.9 (#11760)
* Add GDL 0.9.9

* Add comment on PROJ dependency
2019-06-20 13:36:10 -04:00
Neil Flood
0cec7c6590 py-python-dateutil: Version 2.7.0 acquired dependency on setuptools-scm (#11795) 2019-06-20 09:18:04 -05:00
Carson Woods
e7eb9ce1af Bump netcdf-fortran version to 4.4.5 (#11790) 2019-06-19 17:38:17 -05:00
Oliver Breitwieser
8b1575fa0a py-matplotlib: Fix dependencies in [2.1.0:3.0.0) (#11787)
Starting with 2.1.0, backports.functools_lru_cache replaces functools32
when using python 2.7.x until python2 support is dropped in 3.0.0.

Change-Id: I8db61eac975da0042f6f5babe0f5f0c92807200e
2019-06-19 17:38:04 -05:00
Kevin Manalo
6e4ed3e84a osu-micro-benchmarks: add version 5.6.1 (#11779)
Also add mpi osu-micro-benchmarks to runtime PATH
2019-06-19 11:04:03 -07:00
brietzke
4f9116dae2 New package: fgsl: fortran interface to GSL (#11775) 2019-06-19 10:59:11 -07:00
Chuck Atkins
a60ffdd5a2 vtk, paraview, catalyst packages: Add maintainers (#11774) 2019-06-19 10:57:19 -07:00
Mark W. Krentel
d29f8d0598 xfd package: use Spack-installed libintl (#11545)
Fixes #11526

The xfd configure script tests for libintl but incorrectly concludes
that no additional library is needed because gettext is provided in
libc. So we add '-lintl' to ldlibs to point to the Spack-installed
gettext. Note that the xfd configure script does not have a
--with-gettext option to do this for us.

Also add version 1.1.3
2019-06-19 10:54:50 -07:00
Daniel Topa
06342923fc eospac package: replace md5 checksums with sha256 (#11757) 2019-06-18 19:20:35 -07:00
Andrey Prokopenko
d1c9367446 New package: ArborX (#11474) 2019-06-18 19:14:05 -07:00
Justin S
2287dd6165 New package: amber (starting at v16) (#11619) 2019-06-18 19:01:03 -07:00
dorier
da800c21bd New package: PRRTE (#11614) 2019-06-18 18:47:24 -07:00
william-dawson
de2e088d43 New Package: ELSI (#11605) 2019-06-18 18:30:57 -07:00
Axel Huebl
e925589fc7 xtensor package: add version 0.20.7 and update dependencies (#11574)
* xtensor-python: add version 0.23.1
* xtensor-python: update xtensor/xtl dependency version constraints
  for 0.23.1
* xtensor-python: remove xtensor/xtl dependency version constraints
  for the develop version to favor the latest (develop) version of
  these dependencies
* xsimd: add version 7.2.3
* xtensor: add tbb variant to enable TBB parallelization
* xtensor: add version 0.20.7
* xtensor: update CMake args enable xsimd/tbb support based on
  variant settings
* xtl: add version 0.6.4
2019-06-18 17:05:47 -07:00
Robert Pavel
2eee507914 Added Cinch Spackage (#11759)
* Added Cinch Spackage and updated Flecsi to Use It

Added spackage for Cinch build system and updated flecsi spackage to use
the external version of cinch

* Flake8 compliance for Cinch and Flecsi

* Fixed Cinch Issue and Requested PR Changes

Swapped cinch back to master branch rather than test branch and style
issues for PR
2019-06-18 16:45:58 -05:00
Adam J. Stewart
d21bec996e Restrict gplates to proj@:5 (#11761)
* Restrict gplates to proj@:5

* Add comment on PROJ dependency
2019-06-18 15:15:14 -04:00
Adam J. Stewart
6d8c69848b Add py-rasterio 1.0.24 (#11738)
* Add py-rasterio 1.0.24

* Python 3 required in the next release
2019-06-18 15:14:27 -04:00
Adam J. Stewart
ff6dfe3c00 Add py-shapely 1.6.4.post2 (#11739) 2019-06-18 14:24:56 -04:00
Adam J. Stewart
ea3e1521fe Add CDO 1.9.7.1 (#11758) 2019-06-18 14:22:22 -04:00
Justin S
d82f8cd405 repeatmasker: perl and HMMER dependency fixes (#11660)
repeatmasker depended on HMMER but was never actually configured to
use it. The package also had many shebangs pointing to random perl
locations, now patched to use Spack's perl installation.
2019-06-18 11:11:00 -07:00
Hadrien G
e35355f040 ACTS package: add versions including 0.10.1 (#11606)
* Also add version 0.10.0
* Add leading '0' to 0.9.x versions (e.g. 0.09.1) and 0.8.x versions
* Don't mention acts-framework, that package isn't in Spack yet
2019-06-18 11:00:02 -07:00
Tamara Dahlgren
2a919c8851 Ensure proper gopath set for rclone (#11755)
Fixes #11745

Set the GOPATH environment variable to the stage path to avoid
creation of a $HOME/go directory.
2019-06-18 10:49:07 -07:00
Gabriel Rockefeller
003f670ef9 r3d: add version 2018-01-07 (#11770) 2019-06-18 09:36:49 -05:00
Adam J. Stewart
7c3137a203 Restrict libspatialite to proj@:5' (#11752) 2019-06-17 23:48:16 -04:00
Adam J. Stewart
7dc6b609d5 r-rgdal does not yet support PROJ.6 (#11766) 2019-06-17 23:47:52 -04:00
Adam J. Stewart
6422130709 Add PROJ.6 (#11730)
* Add PROJ.6

* Add back comment about newer PROJ API
2019-06-17 23:46:42 -04:00
Adam J. Stewart
1891734195 PROJ.6 not yet supported in SAGA-GIS (#11768) 2019-06-17 21:39:05 -04:00
Adam J. Stewart
a239ba33af py-cartopy does not yet support PROJ.6 (#11765) 2019-06-17 21:35:14 -04:00
Adam J. Stewart
a896a33b3b Specify which versions of PROJ work with MapServer (#11764) 2019-06-17 21:34:54 -04:00
Adam J. Stewart
349844a5fd Restrict magics to proj@:5 (#11763) 2019-06-17 21:33:25 -04:00
Adam J. Stewart
3018c64537 GRASS GIS does not yet support PROJ.6 (#11762) 2019-06-17 20:59:12 -04:00
Adam J. Stewart
b0cf2b5855 Add GEOS 3.7.2 (#11734) 2019-06-17 20:58:43 -04:00
Adam J. Stewart
de51be45b9 Add GDAL 3.0.0 (#11733)
* Add GDAL 3.0.0

* Clarify PROJ version requirements
2019-06-17 20:57:48 -04:00
Adam J. Stewart
17f20d0f32 Add py-fiona 1.8.6 (#11736)
* Add py-fiona 1.8.6

* Remove commented code

* Python 3 will be required in the next release
2019-06-17 20:54:58 -04:00
Adam J. Stewart
ee20b4826f Add libgeotiff 1.5.1 (#11731) 2019-06-17 20:46:46 -04:00
Manav Bhatia
0e34cc8a8e Libmesh updates (#11750)
* Updates to libMesh: added v1.3.1 checksum, added vtk variant, bugfix for enabling petsc when slepc variant is specified

* fixed indentation issues identified by Travis CI

* - updates version number
- added master as a version
- added new variant options for perflog, metaphysicl and blocked storage
-- bug-fix for metis

* fixes for spack indentation errors

* renaming develop to master following review comment of PR.
2019-06-17 19:38:19 -05:00
Adam J. Stewart
e23adbd4a9 Add py-pyproj 2.2.0 (#11735)
* Add py-pyproj 2.2.0

* PR review requests

* Make Python requirements more explicit
2019-06-17 20:23:40 -04:00
Adam J. Stewart
10d5008ef5 Restrict pism to proj@:4 (#11754)
* Restrict pism to proj@:5

* PROJ.5 is not yet supported either :(
2019-06-17 18:35:03 -04:00
Paul
93e1336de8 Added newer GoLang versions (#11756) 2019-06-17 17:23:09 -05:00
Adam J. Stewart
a558de117a Restrict ibmisc to proj@:4 (#11753)
* Restrict ibmisc to proj@:5

* Restrict ibmisc to proj@:4
2019-06-17 18:02:09 -04:00
Dan Lipsa
cdf4ba81e5 Remove version from py-mpi4py. (#11587) 2019-06-17 10:59:34 -04:00
Valentin Clement (バレンタイン クレメン)
f4d8b1ee60 Add version 1.2.2 and 1.2.3 to the package (#11748) 2019-06-17 16:03:26 +02:00
Dan Lipsa
83c7959580 Fix condition to enable mpi4py. (#11707)
* Fix condition to enable mpi4py.

* flake8

* Catalyst as paraview for mpi4py.

* Catalyst needs numpy and mpi4py.

* Remove leftover enable python.
2019-06-17 09:30:29 -04:00
Axel Huebl
b57ba6289c
openPMD-api: pybind11>=2.3.0 (#11744)
Update the dependency on pybind11 to the latest version
(constexpr signature support for all C++11 compilers + fixes).
2019-06-16 17:47:55 +02:00
Todd Gamblin
ce3a3507a4
cowsay: new package (#11743)
- A program that generates ASCII pictures of a cow with a message.

- This is used by the ISC19 Singularity tutorial, so we should probably
  have it in Spack.
2019-06-16 17:29:25 +02:00
Adam J. Stewart
3192318f36 Add py-geopandas 0.5.0 (#11737) 2019-06-16 08:57:13 +02:00
Adam J. Stewart
4965e9be53 Add libtiff 4.0.10 (#11732) 2019-06-16 08:52:16 +02:00
Adam J. Stewart
830964c2fb Add nasm 2.14.02 (#11729) 2019-06-16 08:50:05 +02:00
Adam J. Stewart
e259932a1e Add openjpeg 2.3.1 (#11728) 2019-06-16 08:49:36 +02:00
Adam J. Stewart
76490dcdbc Add py-cligj 0.5.0 (#11727) 2019-06-16 08:48:42 +02:00
Adam J. Stewart
69a746e941 Add py-numpy 1.16.4 (#11726) 2019-06-16 08:47:38 +02:00
Adam J. Stewart
7bb44f4620 Add libjpeg-turbo 2.0.2 (#11725) 2019-06-16 08:47:14 +02:00
Adam J. Stewart
92ab46b9ed Update URL for older version of jackcess (#11724) 2019-06-16 08:46:13 +02:00
Adam J. Stewart
53a4ea43c8 Add HDF 4.2.14 (#11723) 2019-06-16 08:45:23 +02:00
Adam J. Stewart
ffb7e83e65 Add new package py-boto3 (#11722) 2019-06-16 08:44:41 +02:00
Adam J. Stewart
0de9d15a49 Add new package py-s3transfer (#11721) 2019-06-16 08:43:41 +02:00
Adam J. Stewart
9a400d13a9 Add new package py-botocore (#11720) 2019-06-16 08:43:06 +02:00
Adam J. Stewart
2a15ab42fe Add new package py-jmespath (#11719) 2019-06-16 08:42:35 +02:00
Adam J. Stewart
07a90b214b Add new package py-freezegun (#11718) 2019-06-16 08:41:27 +02:00
Adam J. Stewart
639cb17322 Rename py-dateutil -> py-python-dateutil (#11717) 2019-06-16 08:40:56 +02:00
Adam J. Stewart
954a36c499 Add py-aenum package (#11716) 2019-06-16 08:39:54 +02:00
Kevin Manalo
91ef079511 intel: add version 19.0.4 (#11741) 2019-06-15 23:19:58 -05:00
Adam J. Stewart
3bad45fedf
Updates to poppler to get pdf2svg working (#11681) 2019-06-15 17:32:39 -05:00
Glenn Johnson
6592b4d46d Fix latest HPL for MKL use (#11712)
The 2.3 version of HPL needs LDFLAGS set for use of MKL libraries.
2019-06-15 15:46:59 -05:00