Commit graph

24720 commits

Author SHA1 Message Date
Sebastian Schmitt
54219852d9
Update dill (#24633) 2021-07-01 16:16:30 -06:00
Harmen Stoppels
4a8a6b4c9d
meson: fix typo (libs instead of default_library) (#24649) 2021-07-01 14:37:36 -06:00
Maciej Wójcik
c5a27980df
Added Perl workaround for CUDA <= 8 (#24291)
* Added Perl workaround for CUDA <= 8
* Re-wrapped comment
* Proofreading corrections
* Added a reference
* Do not override Perl include path
* Retrieve shell once

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2021-07-01 12:04:04 -07:00
Seth R. Johnson
406117148d
trilinos: improve behavior of gotype (#24565)
* trilinos: add teko conflict
* trilinos: improve gotype variant

Instead of 'none' and 'long' typically being the same (but not for older
trilinos versions), add an explicit 'all' variant that only works for
older trilinos which supports multiple simultaneous tpetra
instantiations.

* trilinos: add self as maintainer
* trilinos: disable vendored gtest by default
2021-07-01 03:13:21 -06:00
Valentin Volkl
e6700d47aa
yoda: add v1.9.0 and compiler conflict for earlier versions (#23814) 2021-07-01 09:27:33 +02:00
Tamara Dahlgren
ca550cd819
hdf: replacing use of install test root with new cached tests dir (#24368) 2021-07-01 09:17:38 +02:00
kwryankrattiger
8c46e82862
sensei: repo update (#24487) 2021-07-01 09:15:16 +02:00
Seth R. Johnson
d0bbe18c79
vim: use value variant and update config script (#24554)
This changes several conflicting variants to a single
multi-value variant, and uses conflicts instead of raising InstallError.
(With clingo, requesting +gui automatically selects features=huge!)
I have also rearranged the dependencies for clarity and simplified the
conifgure args.
2021-07-01 09:12:05 +02:00
Harmen Stoppels
ca538e18a4
sirius: add v7.2.5 (#24587) 2021-06-30 23:16:23 -06:00
Desmond Orton
59028aa0a5
py-wxpython: Version update to 4.1.1 (#24569) 2021-06-30 16:55:14 -06:00
Zack Galbreath
c8868f1922
ci: only write to broken-specs list on SpackError (#24618)
ci: only write to broken-specs list on SpackError

Only write to the broken-specs list when `spack install` raises a SpackError,
instead of writing to this list unnecessarily when infrastructure-related problems
prevent a develop job from completing successfully.
2021-06-30 12:16:15 -06:00
Dr. Christian Tacke
89bed5773e
root: Add Version 6.24.02 (#24619)
Also fixes some style issues
2021-06-30 12:10:34 -06:00
Robert Mijakovic
1639ac8e86
python: new versions; 3.9.6, 3.8.11, 3.7.11, 3.6.14 (#24593) 2021-06-30 12:01:29 -06:00
Adam J. Stewart
7a794f8b0a
py-torchvision: add v0.10.0 (#24340) 2021-06-30 12:42:25 -04:00
Adam J. Stewart
4f9b539644
py-torch: overhaul package (#24294)
* py-torch: patch no longer needed on master

* Overhaul PyTorch package

* py-torch: add v1.9.0

* Change defaults on macOS

* Submodules still needed...

* Add ONNX dependency

* System libs don't work for many submodules

* Silence CMake warning

* Add conflict for +cuda+rocm

* Add more deps

* Add more BLAS options

* Disable some broken system libs options

* Add patches to build older versions

* +mkldnn requires mkl

* Fix BLAS settings
2021-06-30 12:38:53 -04:00
Adam Moody
7753c816f0
scr and other packages: rename default branches to main (#24578) 2021-06-30 10:31:41 -06:00
Zack Galbreath
0bbd71d561
ci: Don't raise an exception if we fail to relate CDash builds (#24299)
ci: Do not allow cdash-related errors to cause pipeline failure
2021-06-30 10:26:26 -06:00
Morten Kristensen
b8512983d9
py-vermin: add v1.2.1 (#24607) 2021-06-30 09:13:21 -06:00
Adam J. Stewart
ea261e3530
py-pytorch-sphinx-theme: add master version (#24594) 2021-06-30 07:52:20 -06:00
Robert Mijakovic
acd1b04ea2
cmake: add v3.20.4, v3.20.5 (#24582)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-06-30 09:31:00 +02:00
Manuela Kuhn
f2d60261c9
r-stringi: add v1.6.2 (#24585) 2021-06-30 09:30:15 +02:00
shanedsnyder
8ad1dd6036
darshan-runtime,darshan-util: add v3.3.1 + updated git repository (#24574) 2021-06-30 09:11:16 +02:00
Thomas Madlener
c832ac28ae
genfit package: add googletest dependency (#24467) 2021-06-29 22:37:25 -07:00
Axel Huebl
a647ae2aeb
HiPACE++: FFTW+OpenMP (#24575)
- change the default compute backend: we just start to add OpenMP support
- FFTW: prefer with OpenMP acceleration for OpenMP compute backend
2021-06-29 20:55:22 -06:00
Jen Herting
d00082e70b
New package: py-datasets (#24597)
* [py-datasets] created template

* [py-datasets] added dependencies

* [py-datasets] requires py-pyarrow with +parquet

* [py-datasets] Final cleanup

- added homepage
- added description
- removed fixmes
2021-06-29 20:28:23 -06:00
Jen Herting
501f87fb22
dependency for py-torchmeta (#24595)
Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-06-29 18:58:21 -06:00
Sergey Kosukhin
55dd306790
hdf5: a follow-up to #18937 (#23820) 2021-06-29 18:34:12 -06:00
Adam J. Stewart
a2b7f9997d
spack style: warn if flake8-import-order is missing (#24590) 2021-06-29 23:49:18 +00:00
Manuela Kuhn
1c6504d2f5
py-nipype: add 1.6.1 (#24584) 2021-06-29 17:04:23 -06:00
Manuela Kuhn
cc1285c1e1
py-nilearn: add 0.8.0 (#24583) 2021-06-29 16:04:28 -06:00
Harmen Stoppels
304249604a
Fix prefix-collision detection for projections (#24049)
If two Specs have the same hash (and prefix) but are not equal, Spack
originally had logic to detect this and raise an error (since both
cannot be installed in the same place). Recently this has eroded and
the check no-longer works; moreover, when defining projections (which
may truncate the hash or other distinguishing properties from the
prefix) Spack was also failing to detect collisions (in both of these
cases, Spack would overwrite the old prefix with the new Spec).

This PR maintains a list of all "taken" prefixes: if a hash is not
registered (i.e. recorded as installed in the database) but the prefix
is occupied, that is a collision. This can detect collisions created
by defining projections (specifically when they omit the hash).

The PR does not detect collisions where specs have the same hash
(and prefix) but are not equal.
2021-06-29 14:44:56 -07:00
Manuela Kuhn
1eb2798c43
py-numpy: conflict with gcc11 and switch master to main (#24573)
Fix syntax of conflict between numpy 1.21.0 and gcc11 to that the clingo
concretizer recognizes it.
In addition the upstream master branch was renamed to main.
2021-06-29 15:40:32 -06:00
Jen Herting
e284cd136a
New package: py-pyautogui (#24572)
* [py-pyautogui] created template

* [py-pyautogui] added some unconditional dependencies

* [py-pyautogui] Final cleanup

- added homepage
- added description
- removed fixmes

* [py-pyautogui] added missing dependencies
2021-06-29 13:04:20 -06:00
Christoph Conrads
f5474a2b8b
CGNS: add CMake dependency (#24564) 2021-06-29 12:49:26 -06:00
holrock
c824cad2ea
ruby: add v3.0.1 (#24560) 2021-06-29 12:22:38 -06:00
Vinícius
3fe1ecd807
simgrid: add v3.27, update package (#24513) 2021-06-29 12:07:22 -06:00
Massimiliano Culpo
2b65c53d2b
vermin: show line numbers of violations (#24580)
This commit runs vermin with the --violations option
that shows details of the violations to target requirements.
2021-06-29 19:41:22 +02:00
Jen Herting
327cca7e2e
New package: py-huggingface-hub (#24588)
* [py-huggingface-hub] created template

* [py-huggingface-hub] added dependencies

* [py-huggingface-hub] added version 0.0.8

* [py-huggingface-hub] Final cleanup

- added description
- added homepage
- removed fixmes
2021-06-29 10:49:10 -06:00
Scott Wittenburg
09fa155333
pipelines: build warpx on instance with more memory (#24592) 2021-06-29 18:06:30 +02:00
Chuck Atkins
a7b6149cc0
libzmq: Fix gcc11 build failure (#24563) 2021-06-29 06:33:35 +02:00
Manuela Kuhn
b87d9c29c1
py-scipy: fix missing py-cython dependency (#24548) 2021-06-28 14:07:24 -06:00
Larry Knox
cc20dbf645
Hdf5 cmake (#18937)
* Switch hdf5 package from autotools to cmake.

* Add variant for building with zlib, default to ON.

* Update for format requirements.

* Format change.

* Fix breakage from last merge from develop.
Switch szip to use libaec (unrestricted encryption).
Remove 'static' variant:  static libs will only be installed when
~shared.

* Improve args based on suggestions from pull request.

* Update code URL to github.com
Add/modify 4 depends_on lines to fix running "spack graph --deptype=link hdf5".

* Remove trailing whitespace.

* Remove dependencies added solely to make "spack greph --type=link" work.

* Add new version HDF5 1.8.22.

* Remove unnecessary java_check.

* Fix whitespace for style checks.

* Reverted zlib version dependency to 1.1.2:.
zlib variant removed.
api version default renamed "default".

* Remove blank line.

* Whitespace corrections.

* iRemoved unnecessary 'debug' variant.

* Fix typo in version number in conflict for '+szip'.

* Set default for tools variant to True.
Remove patch functions dependent on 'libtool' file that cmake doesn't
produce.

* Remove line to set ONLY_SHARED_LIBS to true.
Add post_install code to install only one version of tools with shared
linkage and original tool names.

* Remove trailing white space and import of glob package not used.

* Leave BUILD_TESTING set to default which is ON.

* Remove  post_install code to install only one version of tools because
some dependent packages running tests in e4s testing are using
h5diff-shared.  Keep both tools versions for now.

* No longer need to import os.
2021-06-28 13:42:54 -06:00
Michael Kuhn
9a9b5dee2e
glib: add v2.68.3 (#24558) 2021-06-28 12:01:24 -06:00
Robert Underwood
69d69cbc79
GDB: resolve warnings about imp being deprecated (#24448)
This patch has already been accepted into gdb's trunk, we just adopting
it earlier here since it is small and gives a better user experience.
2021-06-28 07:16:28 -06:00
Adam J. Stewart
2284007db9
Use flake8-import-order to enforce PEP-8 compliance (#23947) 2021-06-28 08:03:20 -05:00
Mikael Simberg
744cedc7e9
Add Asio package (#24485) 2021-06-28 12:04:19 +02:00
Olivier Cessenat
e631ccc6f7
New Package: visit-mfem (#22906) 2021-06-28 12:02:41 +02:00
Kai Germaschewski
3cfc1dbc14
pfunit: fix gcc10 +mpi (#23878)
Instead of refusing to build +mpi with gcc10, add what I guess is now
the standard workaround, ie., `-fallow-argument-mismatch`.

Getting this into pfunit's cmake-based but kinda non-standard build  isi
a bit ugly, but you gotta do what you gotta do...
2021-06-28 11:33:23 +02:00
Jianwen
2970c02639
Fix kokkos version number in lammps. (#24436) 2021-06-28 11:23:34 +02:00
Manuela Kuhn
77a98cabfa
llvm: add patch for gcc11 (#24363)
llvm10 was not compiling with gcc due to missing header (see #24270)
2021-06-28 11:18:53 +02:00