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Author SHA1 Message Date
Levi Baber
25d71e68f2 Packages/trinotate fix (#9745) 
* trinotate: fix perl location

* trinotate: not where that is

* trinotate: glob

* trinotate: needs perl-dbd-sqlite
 2018-11-13 10:55:59 -06:00
Alberto Chiusole
7938ff9653 Add pic variant to cflags in boost. (#9750) 
* Add pic variant to cflags in boost.

* Improve description in pic variant of boost, see #9750.
 2018-11-13 10:55:01 -06:00
Miles Perry
63535542a1 new version (#9752) 2018-11-13 10:53:47 -06:00
Michael Kuhn
05a4d5a0c6 glib: add 2.56.3 (#9754) 2018-11-13 10:52:56 -06:00
Michael Kuhn
55f8dbbba0 sqlite: add 3.25.3 (#9756) 2018-11-13 10:50:54 -06:00
Michael Kuhn
c7f2c819a1 gdbm: add 1.18.1 (#9757) 2018-11-13 10:50:30 -06:00
Michael Kuhn
52e990dfa1 lmdb: add 0.9.22 (#9759) 2018-11-13 10:49:24 -06:00
Daryl W. Grunau
ff30ab462b eospac version bump (#9763) 2018-11-13 10:47:11 -06:00
Justin Stanley
c26a965c3b r-combinat: new package at 0.0-8 (#9764) 
* r-combinat: new package at 0.0-8

* r-combinat: add list_url
 2018-11-13 10:41:54 -06:00
Michael Kuhn
a852028b02 glib: explicitly disable gtk-doc (#9771) 
glib should not use the globally installed gtk-doc. Otherwise, gtk-doc
can fail with Python errors such as `ImportError: No module named site`.

This is due to the fact that Spack sets `PYTHONHOME`, which can confuse
the global Python installation that is used by gtk-doc.
 2018-11-13 10:37:19 -06:00
Michael Kuhn
fe8c287036 nginx: add 1.15.6 (#9780) 
Needed to compile with gcc@8 and recent versions of glibc.
 2018-11-13 10:25:00 -06:00
Eric
3cd3631fb6 DIAMOND: add version 0.9.22 (#9790) 2018-11-13 10:20:53 -06:00
Eric
4b63b93485 stringtie: add version 1.3.4d (#9791) 2018-11-13 10:20:30 -06:00
Hans Pabst
23c2d5af38 LIBXSMM 1.10 (#9813) 
* LIBXSMM 1.10

* Accurately replaced MD5 with SHA256 sums (libxsmm).
 2018-11-13 10:09:47 -06:00
Eric
fea0722daa aragorn: add version 1.2.36 (#9817) 2018-11-13 10:09:14 -06:00
Eric
5ba76cf908 minimap2: Add versions 2.10 and 2.14 (#9818) 
* Also add missing zlib dependency
 2018-11-13 10:08:42 -06:00
Quinn
2f454c5317 New Package: Nyancat (#9819) 
* nyancat: adding the most important piece of software ever written

* nyancat: some formatting updates

* nyancat: flake8 error fix
 2018-11-13 10:07:54 -06:00
Matthias Diener
6743aef554 charm++: add version 6.9.0 (#9827) 2018-11-13 10:03:22 -06:00
Christoph Junghans
78c7a8218c gromacs: added 2018.[34] (#9828) 2018-11-13 10:02:59 -06:00
Geoffrey Oxberry
f1e5f8e37b hypre: patch only @2.13.0 and @2.14.0 on darwin (#9832) 2018-11-13 09:54:09 -06:00
Michael Kuhn
3f0fc98062 wt: add missing pkgconfig dependency and fix boost version range (#9835) 
wt does not build with newer versions of boost.
 2018-11-13 09:53:44 -06:00
Michael Kuhn
59a6eada53 libssh: fix fetching and add 0.8.5 (#9779) 
Required for openssl@1.1 compatibility.
 2018-11-13 09:51:57 -06:00
Michael Kuhn
68222f2639 libevent: add 2.1.8 and 2.0.22 (#9777) 
- 2.1.8 is required for openssl@1.1 compatibility
- Introduce url_for_version since the URL has changed starting with
  version 2.0.22
 2018-11-13 09:51:26 -06:00
Valentin Clement (バレンタイン クレメン)
1388f6e907 Add new version 1.2.0 to the package (#9837) 2018-11-13 09:49:08 -06:00
Matthias Diener
86b7e6abc3 man-db: add missing gdbm dependency (#9751) 2018-11-13 09:41:43 -06:00
Michael Kuhn
cc928481f8 openssh: add 7.9p1 (#9782) 
- Required for openssl@1.1 compatibility
- Fix openssh's privilege separation path to be below the prefix
 2018-11-13 09:41:17 -06:00
Jon Rood
b4c7ffd424 Adding Paraview version 5.6. (#9788) 2018-11-13 09:36:18 -06:00
Michael Kuhn
86e00e7294 ruby: add 2.5.3 (#9793) 
Required for openssl@1.1 compatibility.
 2018-11-13 09:35:47 -06:00
Michael Kuhn
66ef3c2b18 thrift: add missing pkgconfig dependency (#9834) 
Without pkgconfig, Spack's openssl cannot be found.
 2018-11-13 09:34:51 -06:00
Eric
f48820a71e barrnap package: Add versions 0.6 and 0.7 (#9820) 2018-11-13 09:33:56 -06:00
Adam J. Stewart
b771b4015a Fix bugs in Modules Tutorial (#9821) 
Found a couple bugs while trying to copy and paste the exact
tutorial content.
 2018-11-13 09:31:09 -06:00
Phil Tooley
16aa37bdfe New package: openimageio (#9715) 2018-11-13 00:14:29 -06:00
Phil Tooley
ff09fd5a85 New package: dcmtk (#9716) 2018-11-13 00:08:29 -06:00
Michael Kuhn
f56f6d4e38 Fix pkg-config dependencies (#9738) 
Replace dependencies on specific pkgconfig implementation (e.g. pkgconf)
with dependency on pkgconfig virtual package
 2018-11-13 00:01:41 -06:00
Michael Kuhn
077e509dda gplates package: improvements (#9735) 
- Add version 2.1.0
- Now that #9264 has been merged, gplates seems to build fine with newer
  versions of gcc (tested with gcc@8)
- When using the ninja generator, gplates can be built in parallel
 2018-11-12 23:56:59 -06:00
Alberto Chiusole
c7c3fab744 Add 'pic' variant to netcdf packages (#9605) 2018-11-12 23:54:11 -06:00
Peer-Timo Bremer
91302f89e4 TALASS package: replace old version with new version (#9703) 
New version has bug fixes
 2018-11-12 23:38:03 -06:00
Manav Bhatia
0b86675879 libMesh: new version and dependency updates (#9709) 
* added v1.3.1 checksum
* added vtk and petsc variants
* bugfix: enable petsc when slepc variant is specified
 2018-11-12 23:29:58 -06:00
Daniel Topa
79ad078f78 Open MPI: add versions 3.1.3, 3.0.3, update checksums (#9734) 
All checksums are now sha256
 2018-11-12 23:26:39 -06:00
Michael Kuhn
47d74f3bca pkgconf: Add 1.5.4 (#9737) 2018-11-12 23:22:34 -06:00
Matthias Diener
dbdee8e542 chrpath: add new package (#9708) 2018-11-12 23:21:56 -06:00
Phil Tooley
02cdfd654e version/dependency updates for ilmbase and openexr (#9714) 
* include zlib dependency for openexr, fixes #7274
* version bump to openexr/ilmbase 2.3.0
 2018-11-12 23:18:54 -06:00
Cameron Stanavige
230bdce34e new package: flatcc (#9695) 2018-11-12 23:11:52 -06:00
Axel Huebl
152346f275 nlohmann-json: add new version 3.4.0 (#9692) 2018-11-12 23:08:40 -06:00
Ross Miller
7c267e8534 py-numba: update dependencies and versions (#9706) 
The latest version of py-numba (0.40.1) wants a newer version of
py-llvmlite.  Had to add that version to py-llvmlite/package.py.
 2018-11-12 23:07:40 -06:00
Justin Stanley
87df41e0ca migrate: new package starting at 3.6.11 (#9707) 2018-11-12 23:05:54 -06:00
Sinan
9e67216593 new package: PyH5glance (#9700) 2018-11-12 18:55:49 -06:00
Sinan
ec7e5d3b8b new package: python htmlgen (#9699) 2018-11-12 18:47:04 -06:00
Denis Davydov
e04adbca66 gnuplot: add X11 dependency and QT terminal (#9722) 2018-11-12 18:45:27 -06:00
Justin Stanley
553cecaade r-manipulatewidget: new package at 0.10.0 (#9826) 2018-11-12 18:41:03 -06:00