eugeneswalker
5f1bc15e80
E4S Cray CI Stack ( #37837 )
...
* e4s cray ci stack
* e4s ci: add cray
* add zen4 tag
* WIP: new defintions just for cray
* updates
* remove ci signing job overrride, not necessary
* echo $PATH and show modules loaded
* add mirror
* add external def for cray-libsci
* comment out quantum-espresso
* use /etc/protected-runner as key path
* cray ci stack: do not remove tags: [spack, public]
* make cray stack composable
* generate job should run on public tagged runner, override default config:install_tree:root
* CI: Use relative path in default script
* CI: Use relative includes paths for shell runners
* Use concrete_env_dir for relpath
* ml-darwin-aarch64-mps: jax has bazel codesign issue
---------
Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
2023-06-06 18:41:32 -07:00
Mikael Simberg
fa9fb60df3
CachedCMakePackage: fix bug where CMAKE_CUDA_ARCHITECTURES=none is set ( #38169 )
...
#37592 updated cached cmake packages to set CMAKE_CUDA_ARCHITECTURES.
The condition `if archs != "none"` lead to `CMAKE_CUDA_ARCHITECTURES=none`
when cuda_arch=none (incorrect check on the value of a multi-valued
variant), i.e. CMAKE_CUDA_ARCHITECTURES is always set. This PR udpates
the condition to if archs[0] != "none" to ensure CMAKE_CUDA_ARCHITECTURES
is only set if cuda_arch is not none (which seems to be the pattern used
in other packages).
This does the same for HIP (although in general ROCmPackage disallows
amdgpu_target=none when +rocm).
2023-06-06 14:41:02 -07:00
Mosè Giordano
e759e6c410
julia: Update patch for llvm 14 without binary files ( #37959 )
2023-06-06 21:53:20 +02:00
Jonathon Anderson
f41446258a
containers: don't install epel-release on Fedora ( #37766 )
2023-06-06 21:50:46 +02:00
Erik Schnetter
268649654d
openssl: add versions 1.1.1u, 3.0.9, 3.1.1 ( #38023 )
2023-06-06 21:49:01 +02:00
Diego Alvarez S
12e249f64e
Add nextflow 23.04.1 ( #38166 )
2023-06-06 12:12:50 -07:00
Tamara Dahlgren
c34cd76f2a
perl: convert to new stand-alone test process ( #37727 )
2023-06-06 12:07:44 -07:00
Tamara Dahlgren
815b210fc8
tests/ginkgo: converted to new stand-alone test process ( #35730 )
...
* Ginkgo: converted to new stand-alone test process
* ginkgo: update string formatting, compiler setting
2023-06-06 11:58:53 -07:00
Tamara Dahlgren
e5d5efb4c1
tests/darshan-util: convert to new stand-alone test process ( #37836 )
2023-06-06 11:56:40 -07:00
Tamara Dahlgren
0aa4b4d990
tests/oommf: convert to new stand-alone test process ( #38009 )
...
* oommf: convert to new stand-alone test process
* oommf: Switch build-time tests to documented approach
2023-06-06 11:55:33 -07:00
Tamara Dahlgren
01c1d334ae
tests/mfem: convert to new stand-alone test process ( #38011 )
...
* mfem: convert to new stand-alone test process
* Restore make target, use config_mk property
2023-06-06 11:42:51 -07:00
Massimiliano Culpo
717fc11a46
Don't build rocky:9 images for ppc64le ( #38202 )
...
See https://docs.rockylinux.org/release_notes/9_2/
2023-06-06 17:46:53 +02:00
eugeneswalker
d21c49e329
@develop+stokhos: do not set Stokhos_ENABLE_PCE_Scalar_Type=False ( #38187 )
2023-06-06 08:32:21 -07:00
Tamara Dahlgren
6937d9dddc
eigenexa: convert to new stand-alone test process ( #35745 )
2023-06-06 15:08:51 +02:00
Thomas Bouvier
4c2531d5fb
libraqm: add missing fribidi dependency (#36125 )
...
* `libraqm`: add missing `fribidi` dependency
* `libraqm`: add `sheenbidi` variant
* [@spackbot] updating style on behalf of thomas-bouvier
---------
Co-authored-by: thomas-bouvier <thomas-bouvier@users.noreply.github.com>
2023-06-05 18:13:42 -04:00
Alex Richert
62fd890c52
Rename fpic variant to pic for fms ( #38101 )
2023-06-05 14:58:52 -07:00
Alex Richert
4772fd7723
Add MADIS package ( #38097 )
...
* Add MADIS package
* madis update
* [@spackbot] updating style on behalf of AlexanderRichert-NOAA
* allow arg mismatch for gcc@10: for madis
2023-06-05 14:31:51 -07:00
snehring
7c11faceb0
ninja-phylogeny: adding new package ninja-phylogeny ( #38182 )
2023-06-05 16:44:51 -04:00
Alec Scott
053550e28a
asdcplib: add v2_10_38 ( #37971 )
2023-06-05 12:46:19 -07:00
Alec Scott
3ed7258447
fjcontrib: add v1.052 ( #38116 )
2023-06-05 14:25:30 -05:00
Manuela Kuhn
a5cf5baa9e
py-jupyterlab: add 4.0.1 incl. new dependencies ( #38102 )
2023-06-05 13:54:20 -05:00
Alec Scott
ec8039cc74
seal: add v4.1.1 ( #38155 )
2023-06-05 11:46:40 -07:00
snehring
9bfa840c27
ncbi-rmblastn: adding new version 2.14.0 ( #38173 )
...
* ncbi-rmblastn: adding new version 2.14.0
* ncbi-rmblastn: add maintainer
2023-06-05 11:45:15 -07:00
Alec Scott
9865f42335
azcopy: add v10.19.0 ( #38106 )
2023-06-05 10:56:34 -07:00
Alec Scott
dba2829871
hssp: add v3.1.5 ( #38107 )
2023-06-05 10:51:30 -07:00
Alec Scott
8c0e1fbed9
diamond: add v2.1.7 ( #38115 )
2023-06-05 10:46:39 -07:00
Alec Scott
187488b75b
optional-lite: add v3.5.0 ( #38148 )
2023-06-05 10:24:37 -07:00
Alec Scott
2aa35fef3e
nccmp: add v1.9.1.0 ( #38142 )
2023-06-05 10:15:25 -07:00
Nathalie Furmento
d373fc36ae
starpu: add release 1.3.11 ( #38172 )
2023-06-05 09:12:40 -07:00
Massimiliano Culpo
e483762015
Update RtD and Sphinx configuration ( #38046 )
2023-06-05 17:39:11 +02:00
Houjun Tang
5840a00000
Update package.py require HDF5 1.14+ ( #38026 )
2023-06-05 11:27:53 -04:00
George Young
110f836927
fastqc: add 0.12.1, update patch files ( #37934 )
...
* fastqc: add 0.12.1
* fastqc: add 0.12.1
* Update var/spack/repos/builtin/packages/fastqc/package.py
Yeah, had considered doing the same, I'd just opted to maintain the status quo. All good.
Co-authored-by: Alec Scott <alec@bcs.sh>
* Update package.py
Style fiddles to make the bot contented.
---------
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Co-authored-by: Alec Scott <alec@bcs.sh>
2023-06-05 11:07:51 -04:00
Weiqun Zhang
d6765f66ae
amrex: add version 23.06 ( #38056 )
2023-06-05 07:44:32 -07:00
Alec Scott
19dac780e8
iozone: add v3_506 ( #38118 )
2023-06-05 13:00:23 +02:00
Alec Scott
b82b549c59
iqtree2: add v2.2.2 ( #38119 )
2023-06-05 13:00:06 +02:00
Alec Scott
b376401ece
jimtcl: add v0.82 ( #38120 )
2023-06-05 12:59:48 +02:00
Alec Scott
7d956dbe9e
jline3: add v3.22.0 ( #38121 )
2023-06-05 12:59:32 +02:00
Alec Scott
6db1d84bb0
kubernetes: add v1.27.2 ( #38123 )
2023-06-05 12:58:47 +02:00
Alec Scott
2094fa3056
simde: add v0.7.6 ( #38157 )
2023-06-05 06:38:46 -04:00
Alec Scott
3d255bc213
leptonica: add v1.83.1 ( #38125 )
2023-06-05 12:36:16 +02:00
Alec Scott
5538dda722
libcint: add v5.3.0 ( #38127 )
2023-06-05 12:36:02 +02:00
Alec Scott
1c0d89bf25
libeatmydata: add v131 ( #38128 )
2023-06-05 12:35:46 +02:00
Alec Scott
4cc0199fbb
libibumad: add v46.0 ( #38130 )
2023-06-05 12:35:33 +02:00
Alec Scott
edb8226fff
librdkafka: add v2.1.1 ( #38131 )
2023-06-05 12:35:20 +02:00
Alec Scott
ef972cf642
libspiro: add v20221101 ( #38132 )
2023-06-05 12:35:03 +02:00
Alec Scott
50c13541e4
libgd: add v2.3.3 ( #38129 )
2023-06-05 06:29:32 -04:00
Alec Scott
fd5d7cea6e
perl-math-bigint: add v1.999838 ( #38150 )
2023-06-05 06:29:15 -04:00
Alec Scott
526314b275
laszip: add v3.4.3 ( #38124 )
2023-06-05 06:29:00 -04:00
Alec Scott
7b37c30019
libthai: add v0.1.29 ( #38133 )
2023-06-05 11:28:44 +02:00
Alec Scott
dc03c3ad9e
libvori: add v220621 ( #38135 )
2023-06-05 11:26:58 +02:00
