Commit graph

5969 commits

Author SHA1 Message Date
Adam J. Stewart
929a3317e9 Add env vars for Intel VTune Amplifier (#3531)
* Add env vars for Intel VTune Amplifier

* Flake8 fix
2017-03-23 15:58:12 -05:00
Adam J. Stewart
10b49fd845 Add DejaGnu package (#3518) 2017-03-23 14:35:38 -05:00
Adam J. Stewart
4ecfc39e1e Add Expect package (#3517)
* Add Expect package

* Ignore patches during flake8 tests for package.py files

* Remove controversial changes
2017-03-23 14:35:11 -05:00
Adam J. Stewart
ace890af49 Only configure requested lammps features (#3526)
* Only configure requested lammps features

* Run configure from root and make from src
2017-03-23 12:28:17 -05:00
Adam J. Stewart
4e8a59a062 Add patch to fix xcb-proto make check (#3520) 2017-03-22 16:17:01 -05:00
Howard Pritchard
7c82db07ac Open MPI: add new packages (#3519)
there were various updated packages, both for the 2.x, 2.0.x,
and 1.10.x release branches of Open MPI.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
(cherry picked from commit 3b671935783fc3af76dc642a54461c2f02ab8ebf)
2017-03-22 16:16:32 -05:00
Jeffrey Salmond
f225741d07 configure vtk with external hdf5 and netcdf packages (#3504)
* configure vtk with external hdf5 and netcdf packages

* remove ~mpi constraints from hdf5 and netcdf
2017-03-22 14:53:05 -05:00
Erik Schnetter
7e7045e0ca llvm: Install utilities into libexec (#3516) 2017-03-22 09:01:10 -07:00
Jimmy Tang
31e28f9662 Update googletest (#3514) 2017-03-22 06:57:20 -05:00
Gregory Lee
606c5fbc5f patch readline to fix ipython seg fault (#3512) 2017-03-21 16:24:13 -07:00
Adam J. Stewart
07397e8ef7 Convert gettext to AutotoolsPackage (#3510) 2017-03-21 17:40:45 -05:00
George Hartzell
9b5f5fccf0 Fix for find --explicit #3374 (#3492)
This fixes the problem described in #3374, which describes `spack find` ignore explicit/implicit.

I believe that this was broken in #2626.

This restores the behavior of implicit/explicit for me.

I believe that it does not screw anything else up, but ....
2017-03-21 15:30:38 -07:00
Adam J. Stewart
657110f9d7 Convert isl to AutotoolsPackage (#3507) 2017-03-21 12:11:03 -05:00
Adam J. Stewart
ed9dec2259 Add recommended patches to mpfr package (#3506) 2017-03-21 11:25:14 -05:00
Kim Serradell
3923bdca90 Replacing failing git clone by valid url (#3505)
* Replacing failing git clone by valid url

* Moving to previous version package (0.163)

* Removing automake and autoconf dependencies and adding url_list to pick up newer versions

* Corrected typo

* Reorder versions and removed libtool
2017-03-21 10:50:34 -05:00
健美猫
babeb32c6d Add package openfst. (#3324) 2017-03-21 09:53:58 -05:00
Erik Schnetter
75c6c9f1ee llvm: Don’t copy “prefix/bin” into “prefix” during install (#3460) 2017-03-20 20:46:29 -05:00
Adam J. Stewart
777acb4c03 Fix: setuptools is a runtime dependency for pudb (#3502) 2017-03-20 18:08:45 -05:00
Adam J. Stewart
d31bbe450b Add latest version of binutils (#3500) 2017-03-20 18:07:37 -05:00
Michael Kuhn
0be9cee984 Update leveldb to 1.20 (#3441) 2017-03-20 15:07:24 -05:00
Erik Schnetter
79d0e7a5d7 gasnet: Update to 1.28.2 (#3496) 2017-03-20 15:05:23 -05:00
Erik Schnetter
ae8380c4fb cereal: Update to 1.2.2 (#3499) 2017-03-20 15:05:02 -05:00
Erik Schnetter
91dd854694 jemalloc: Update to 4.5.0 (#3497) 2017-03-20 15:04:34 -05:00
Erik Schnetter
68a4706b1e py-yt: Update to 3.3.5 (#3498) 2017-03-20 15:04:17 -05:00
scheibelp
19dca26f3a Improve output for compiler commands (#3480)
* Order listed compiler sections

"spack compiler list" output compiler sections in an arbitrary order.
With this commit compiler sections are ordered primarily by compiler
name and then by operating system and target.

* Compiler search lists config files with compilers

If a compiler entry is already defined in a configuration file that
the user does not know about, they may be confused when that compiler
is not added by "spack compiler find". This commit adds a message at
the end of "spack compiler find" to inform the user of the locations
of all config files where compilers are defined.
2017-03-20 12:36:44 -07:00
Matthew LeGendre
5ac6421f14 Fix issue with config.guess patching when the overwritten config.guess did not have write permissions. (#3494) 2017-03-20 12:35:38 -07:00
Erik Schnetter
22f3c9de84 fftw: Update to 3.3.6-pl1 (#3495) 2017-03-20 12:35:08 -07:00
健美猫
1655161ebb Add ffmpeg package. (#3470) 2017-03-19 10:12:34 -05:00
健美猫
fb248f17fb Substitue ftp:// with http:// (#3491) 2017-03-19 10:11:06 -05:00
健美猫
14c181e480 Add new version for intel package: 16.0.4 17.0.2 . (#3490) 2017-03-19 07:57:06 -05:00
Todd Gamblin
1297e47463 Use byte-encoded UTF-8 for sourced environment in Python 2 (#3489)
- Fixes recurring errors on develop with unicode commit characters.
- still Python3-proof: python3 will use str instead of bytestrings.
2017-03-18 22:48:20 -07:00
Erik Schnetter
a0ab3c2523 hdf5: Clean up building self-tests (#3483)
* hdf5: Clean up building self-tests

* hdf5: Clean up running self-tests
2017-03-18 20:14:47 -05:00
Adam J. Stewart
4866b4592f Add missing dependencies to gawk (#3481)
* Add missing dependencies to gawk

* Fix make check

* Add mawk packages and awk virtual dependency

* Use mawk instead of gawk to build ncurses

* Rearrange order of patches and dependencies
2017-03-18 19:13:32 -05:00
Adam J. Stewart
9d0a3c6b05 Fix deptype of various dependencies on Python packages (#3486) 2017-03-18 15:20:16 -05:00
Javier
6b97f538cf Adding new packages: py-argparse and py-importlib (#3488) 2017-03-18 13:45:29 -05:00
Adam J. Stewart
773357e20f setuptools is a runtime dependency of virtualenv (#3485) 2017-03-17 16:25:48 -05:00
Erik Schnetter
a2235fed41 julia: Create cacert directory manually to ensure correct permissions (#3482) 2017-03-17 16:07:49 -05:00
Javier
b0d9088603 Adding new package: py-future (#3401)
* Adding new package: py-future

* Commenting out deps needed when installing python@2.6
2017-03-17 13:59:38 -05:00
Adam J. Stewart
10b767b93f Don't use @system in packages.yaml (#3472) 2017-03-17 07:55:55 -07:00
Adam J. Stewart
5f13e40655 Add package for ESMF (#2831)
* Add package for ESMF

* Apparently mvapich2 is supported?
2017-03-17 09:21:25 -05:00
Adam J. Stewart
2c39f16d44 Add version constraints to VTK patch (#3357) 2017-03-17 09:19:44 -05:00
Erik Schnetter
19b3afebc9 hpx5: Convert to AutotoolsPackage, several updates (#3456)
* hpx5: Convert to AutotoolsPackage, several updates

- convert to AutotoolsPackage
- add several variants
- add several dependencies
- add new version 4.0.0
- don’t set compiler flags explicitly

* hpx5: Don’t import os

* hpx5: Clean up configure arguments

* hpx5: Correct libffi configure declaration

Also add new variant “+instrumentation”.

* hpx5: Correct CUDA, MPI, OpenCL configuration

* hpx5: Use built-in libffi

Spack’s libffi installs its headers in a strange place, and hpx5 can’t pick them up.
2017-03-17 09:11:02 -05:00
Erik Schnetter
e7bf8034b0 libpciaccess: Convert to AutotoolsPackage, remove Darwin work-around (#3459)
* libpciaccess: Convert to AutotoolsPackage, remove Darwin work-around

Other packages that depend on libpciaccess can do so via a conditional dependency (via a variant); we don’t need a dummy package for Darwin any more.

* Disable libpciaccess dependency on non-Darwin platforms

* hwloc: Remove direct dependency on libpciaccess
2017-03-17 09:09:09 -05:00
Michael Kuhn
1124bdc99e Add packages libbson and libmongoc (#3440) 2017-03-16 23:16:30 -07:00
Erik Schnetter
9c1885022e simulationio: New package (#3422)
* simulationio: New package

* simulationio: Rename development version to “develop”

* simulationio: Try to make flake8 happy

* simulationio: Correct flake8 error

* simulationio: Extend Python

* simulationio: Remove unused imports
2017-03-16 23:06:47 -07:00
Adam J. Stewart
386462c0cb Add latest version of NCO (#3469) 2017-03-16 21:39:41 -07:00
Brian Van Essen
3f17f761fe Py keras extension (#3468)
* Added support for building Theano with GPU support.  Added a package
for the libgpuarry libary needed for Theano.

* Added dependency on py-pexpect package which ipython requires.
2017-03-16 21:24:36 -07:00
scheibelp
0b27a7e13d Detect when OS updates affect compiler selection (#3410)
Fixes #1476

Concretization uses compilers defined in config files and if those
are not available defaults to searching typical paths where the
detected operating system would have a compiler. If there is an OS
update, the detected OS can change; in this case all compilers
defined in the config files would no longer match (because they would
be associated with the previous OS version). The error message in
this case was too vague. This commit adds logic for detecting when it
is likely that the OS has been updated (in particular when that
affects compiler concretization) and improves the information provided
to the user in the error message.
2017-03-16 21:08:13 -07:00
scheibelp
5936ad2ca7 Dont propagate flags between different compilers (#3379)
* Dont propagate flags between different compilers

Fixes #2786

Previously when a spec had no parents with an equivalent compiler,
Spack would default to adding the compiler flags associated with the
root of the DAG. This eliminates that default.

* added test for compiler flag propagation

* simplify compiler flag propagation logic
2017-03-16 21:07:35 -07:00
Todd Gamblin
328b2142f5 Fix Qt4 build on Yosemite (10.11) (#3444) 2017-03-16 17:55:06 -07:00