* Force the Python interpreter with an env variable
This commit forces the Python interpreter with an
environment variable, to ensure that the Python set
by the "setup-python" action is the one being used.
Due to the policy adopted by Spack to prefer python3
over python we may end up picking a Python 3.X
interpreter where Python 2.7 was meant to be used.
* Revert "Update conftest.py (#24473)"
This reverts commit 477c8ce820.
* Make python-dateutil a soft dependency for unit tests
Before #23212 people could clone spack and run
```
spack unit-tests
```
while now this is not possible, since python-dateutil is
a required but not vendored dependency. This change makes
it not a hard requirement, i.e. it will be used if found
in the current interpreter.
* Workaround mypy complaint
This commit fixes a subtle bug that may occur when
a package is a "possible_provider" of a virtual but
no "provides_virtual" can be deduced. In that case
the cardinality constraint on "provides_virtual"
may arbitrarily assign a package the role of provider
even if the constraints for it to be one are not fulfilled.
The fix reworks the logic around three concepts:
- "possible_provider": a package may provide a virtual if some constraints are met
- "provides_virtual": a package meet the constraints to provide a virtual
- "provider": a package selected to provide a virtual
Spack packages can now fetch versions from CVS repositories. Note
this fetch mechanism is unsafe unless using :extssh:. Most public
CVS repositories use an insecure protocol implemented as part of CVS.
Here we are adding an install_times.json into the spack install metadata folder.
We record a total, global time, along with the times for each phase. The type
of phase or install start / end is included (e.g., build or fail)
Signed-off-by: vsoch <vsoch@users.noreply.github.com>
Co-authored-by: vsoch <vsoch@users.noreply.github.com>
The original implementation of `flag_handler` searched the
`self.compiler.cc` string for `clang` or `gcc` in order to add a flag
for those compilers. This approach fails when using a spack-installed
compiler that was itself built with gcc or clang, as those strings will
appear in the fully-qualified compiler executable paths. This commit
switches to searching for `%gcc` or `%clang` in `self.spec`.
Co-authored-by: Paul Henning <phenning@lanl.gov>
the 4.1.1 release has fixes for problems that kept 4.1.0 from
being the default open mpi version to build using spack.
related to #24396
Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
* remove blueos check on cuda variant, fix typo
* restore necessary compiler guard
* remove axom+cuda from testing because it only partially works outside ppc systems
This PR does the following:
- adds version corresponding to commit at 08/03/2020
- adds missing get_DE_events.py script
- adds dependencies needed by get_DE_events.py
- removes REDItoolDenovo.py.patch and python2to3.patch in favor of
running 2to3 and reindent pre-build
- add batch_sort.patch to handle differences in string/char handling
betweeen python2 and python3
- adds a variant for the Nature Protocol
- adds dependencies for the nature_protocol variant
- added myself as maintainer
This PR adds a new version of reditools from git.
