Ben Boeckel
9ec4ae83af
netcdf: link to MPI
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Newer GNU linker refuses to use transitive linking; if netcdf calls
MPI_Allreduce, it must link the providing library directly.
Also switched to CMake because I don't know autoconf well enough to know
how to put MPI stuff into it.
2015-10-15 09:20:16 -04:00
Peter Scheibel
71dcf8833c
Make sure to generate output for dependencies as if they were separate tests:
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the original intent was to generate output as if each package was a unit test,
but I noticed that I was only generating test output for top-level packages.
2015-10-13 19:02:41 -07:00
Peter Scheibel
1ce6d8b627
Add spec YAML format to test output.
2015-10-13 10:41:47 -07:00
Todd Gamblin
d16095c856
Add forgotten file from previous commit.
2015-10-13 10:35:19 -07:00
Peter Scheibel
9f56d9c807
Don't create test output for any package that was already installed.
2015-10-12 20:56:03 -07:00
Peter Scheibel
6cd22e5786
1. Added Junit XML format
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2. Specify output to a file vs. a directory
3. Use [1] and [2] to write an XML file tracking success of package installs in
Junit XML format
2015-10-12 20:49:23 -07:00
Peter Scheibel
b7249d66b3
Adding command testinstall. See "spack testinstall -h" for documentation.
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Still need to add output formatting (in a commonly parse-able format like Junit
or TAP). May want to adjust how the build log is accessed in case of a build
failure.
2015-10-12 19:18:31 -07:00
Todd Gamblin
2c81875019
Fix bug in colify color handling.
2015-10-12 14:44:41 -07:00
Gregory L. Lee
5dd39bfca5
bug fix for github issue 122
2015-10-08 08:12:30 -07:00
Todd Gamblin
58c5373890
update warning message for spack -k.
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- warning said it didn't do checksums; really does.
2015-10-08 00:14:44 -07:00
Todd Gamblin
5d64012868
Merge branch 'features/libxcb-1.11.1' into develop
2015-10-08 00:13:47 -07:00
Massimiliano Culpo
17de9a37f1
gcc : fixed spec file
2015-10-06 18:49:18 +02:00
Massimiliano Culpo
d44571257a
spec file : everything is dumped, only link rule is modified
2015-10-06 18:49:04 +02:00
Massimiliano Culpo
f068d1ba57
GCC : added variants for libelf, binutils, isl. gcc@5.0: still has issues
2015-10-06 18:48:47 +02:00
Gregory L. Lee
6fcf16b710
added libxcb version 1.11.1
2015-10-05 12:59:26 -07:00
Mario Melara
75d30b08fb
Added current version 3.2 of libffi version 3.1 has a bug that interferes with glib
2015-10-01 21:51:55 -07:00
Todd Gamblin
cc6252cdfa
Merge pull request #118 from scalability-llnl/features/scr
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update scr to 1.1.8
2015-09-29 18:21:37 -07:00
Adam Moody
5563c66675
update scr to 1.1.8
2015-09-29 18:18:34 -07:00
Gregory Becker
5fda7daf57
an ordered database test
2015-09-27 17:54:24 -07:00
Todd Gamblin
dd21a01dc4
Merge pull request #116 from mamelara/develop
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Added samtools bioinformatics software
2015-09-27 17:29:50 -07:00
Todd Gamblin
8818f4ac5e
Remove enabled variants from install prefix.
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- these make the prefix too long in many cases.
- users can figure out which install is which by querying.
2015-09-27 17:01:35 -07:00
Todd Gamblin
adbd393c39
Remove special characters (@, %, +, ~, etc) from stage name
2015-09-27 17:01:35 -07:00
Mario Melara
13eb461ec3
Adding bowtie2 package along with patch
2015-09-24 11:21:54 -07:00
Mario Melara
521632b3dc
Added samtools bioinformatics software
2015-09-23 16:30:44 -07:00
Todd Gamblin
6d4eed3845
Merge pull request #102 from RasmusWL/features/fish
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Add fish (shell) package
2015-09-23 01:37:59 -07:00
Todd Gamblin
82ea7aec51
Merge pull request #106 from justintoo/add-package-doxygen
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(Package) Add Doxygen (v1.8.10)
2015-09-23 01:37:31 -07:00
Todd Gamblin
d474eeb424
Merge pull request #110 from scalability-llnl/features/boostupdate
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update boost package for new releases
2015-09-23 00:32:22 -07:00
Todd Gamblin
5d6baacc56
Merge pull request #111 from scalability-llnl/features/protobuf
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add protobuf package
2015-09-23 00:31:26 -07:00
Todd Gamblin
46cf0a23d9
Merge pull request #112 from scalability-llnl/features/glog
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add glog package
2015-09-23 00:30:37 -07:00
Todd Gamblin
f02af701e5
Merge pull request #113 from scalability-llnl/features/gflags
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add gflags package
2015-09-23 00:29:50 -07:00
Todd Gamblin
5f826a0ab7
Merge pull request #114 from scalability-llnl/features/snappy
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Features/snappy
2015-09-23 00:27:27 -07:00
Todd Gamblin
ba83dd56a1
Merge pull request #115 from scalability-llnl/features/lmdb
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add lmdb package
2015-09-23 00:21:22 -07:00
Adam Moody
84823ed828
add lmdb package
2015-09-22 12:17:01 -07:00
Adam Moody
3ade141829
add leveldb package
2015-09-22 11:59:09 -07:00
Adam Moody
30acc6f2f0
add snappy package
2015-09-21 16:45:59 -07:00
Adam Moody
22ba02b22b
add gflags package
2015-09-21 16:40:23 -07:00
Adam Moody
b5d7cd55ce
add glog package
2015-09-21 16:30:11 -07:00
Adam Moody
e4e22ed17e
add protobuf package
2015-09-21 16:19:50 -07:00
Todd Gamblin
d0e22b2240
Add ref counting to database. This does not handle removal properly yet.
2015-09-18 11:40:05 -07:00
Todd Gamblin
fb73979345
Allow custom timeout for database locking.
2015-09-17 16:09:59 -07:00
Todd Gamblin
e17ad6a684
Simplify lock context managers.
2015-09-17 01:05:19 -07:00
Todd Gamblin
ccf311c9c6
Several changes to DB implementation.
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1. Database stores a file version, so we can add to it in the future.
2. Database indexed by hashes and not numerical indexes.
3. Specs built by database have consistent hashes and it's checked.
4. minor naming and whitespace changes.
2015-09-17 00:16:12 -07:00
Gregory Becker
cd23d2eaa2
Added spack fsck and re-read from glob if the database file does not exist. Allows older versions to smoothly upgrade to the database.
2015-09-15 14:20:19 -07:00
Justin Too
99ca0f3153
(Package) Add Doxygen (v1.8.10)
2015-09-11 20:29:18 +00:00
Rasmus Wriedt Larsen
b06117f77a
Add fish (shell) package
2015-09-03 14:19:27 -07:00
Gregory Becker
9c8e46dc22
Added conservative locking to the spack commands that access the database at _index
2015-09-03 09:21:19 -07:00
Adam Moody
ac088bae6a
update boost
2015-09-01 16:02:14 -07:00
Gregory Becker
c3246ee8ba
Removed incorrect stage removal code from cleanup() in do_install()
2015-08-31 09:46:55 -07:00
Gregory Becker
f406fcb843
Fixed several issues from code review
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Most importantly wrote the Lock, Read_Lock_Instance, and Write_Lock_Instance classes in lock.py
Updated the locking in database.py
TODO: Lock on larger areas
2015-08-31 09:38:38 -07:00
Todd Gamblin
c5c9ada7b0
Fix for GitHub #95
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develop: compiler clang@unknown created for /usr/bin/clang-format
https://github.com/scalability-llnl/spack/issues/95
2015-08-27 02:04:58 -07:00
