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Author SHA1 Message Date
Amjad Kotobi
b99a5369ce
r-roxygen : dependencies and version updated (#16565) 
* r-roxygen : dependencies and version updated

* Dependencies updated for condition
 2020-05-12 11:40:55 -05:00
Amjad Kotobi
7528e1eb45
r-purrr : dependencies and version update (#16566) 
* r-purrr : dependencies and version update

* Dependencies updated for condition
 2020-05-12 11:39:39 -05:00
Amjad Kotobi
173823e77d
r-rversions : new package (#16572) 
* r-rversions : new package

* URL updated r-rversions
 2020-05-12 11:39:08 -05:00
Amjad Kotobi
14b80ecaf2
r-withr : dependencies and version updated (#16577) 
* r-withr : dependencies and version updated

* Adding version conditions for dependencies
 2020-05-12 11:36:25 -05:00
Amjad Kotobi
7c327ed447
r-knitr : dependencies and version updated (#16579) 
* r-knitr : dependencies and version updated

* Adding version conditions for dependencies
 2020-05-12 11:35:41 -05:00
Tomoki, Karatsu
278f8eb7fe
modylas: Add flag to use preprocessor when building with Fujitsu compiler. (#16598) 2020-05-12 11:34:28 -05:00
Jose E. Roman
8b06bd7198
New patch release SLEPc 3.13.2 (#16601) 2020-05-12 11:33:46 -05:00
Andrew W Elble
e36aa96392
py-horovod: link dependency for py-torch (#16600) 
fix for same reasons as #16495.
 2020-05-12 11:24:30 -05:00
Toyohisa Kameyama
7813e41464
caffe: fixed build error (#16520) 
* opencv 3.2 requires cmake 3.11 or older.
caffe dependency is changed.

* revert opencv variant to caffe.
backport to opencv errors.
 2020-05-12 09:39:19 -05:00
Sergey Kosukhin
d1a5dc792e
py-dask: new version (#16531) 
* py-dask: new version

* py-dask: update the constraints.

* py-dask: add a list of maintainers.
 2020-05-12 09:35:11 -05:00
Michael Kuhn
15112f9dba
gcc: fix several issues (#16599) 
- GCC has moved to Git
- The develop/master version requires flex
- Add myself as a maintainer
- Set the library path in the zstd patch
 2020-05-12 13:56:58 +02:00
Todd Gamblin
a44f487a1d
z3: update python dependency (#16597) 
-[x] `z3` needs a dependency on `py-setuptools`
-[x] `z3` has a run dependency on `python`, so we might as well make
     building with the python bindings default
 2020-05-12 11:15:42 +02:00
Justin S
80e7a61597
prokka: new package at v1.14.6 (#16282) 2020-05-12 10:09:01 +02:00
Todd Gamblin
269bcfe1c8
clingo: update package (#16594) 
`clingo` has some undocumented dependencies:
- `bison`, for which the default macos version is too old
- `re2c`, which isn't always available

Also, the python installation was not set up properly. Clingo by default
does an install in `~/.local`, so we need to disable that and add a few
other options to get things right.

- [x] add `bison` dependency
- [x] add `re2c` dependency
- [x] make `doxygen` dependency optional (and patch if needed)
- [x] add options to fix `python` build
- [x] make python build optional but on by default
 2020-05-12 09:41:31 +02:00
Tomoki, Karatsu
a59b92d303
xabclib: added support for Fujitsu compiler. (#16596) 
- Added Fujitsu compiler options that have the same functions as the options added for GCC
- Added option to link C objects
 2020-05-12 09:40:11 +02:00
Sajid Ali
b526a90220
Charm++: fix build prefix; add ucx/pmi support (#15666) 
* Add pmi support (required by ucx, ofi, and gni backends)
* Add support for ucx backend
* Add dependency on MPI for pmi=simplepmi, slurmpmi, or slurmpmi2
* Remove charmpp as an MPI provider since the changes in this PR can
  add MPI as a dependency (mentioned previously)
* Install into transport_protocol-OS-arch subdirectory to match
  default charmpp installation behavior (which helps dependents find it)
 2020-05-11 16:27:38 -07:00
Greg Becker
fa702b8311
python: add -fwrapv to cflags for python@3.8.0: %intel (#16592) 2020-05-11 18:02:56 -05:00
Michael Kuhn
35c3478fcd
fio: Add 3.19 (#16571) 
Earlier versions are not compatible with gcc@10:.
 2020-05-11 16:54:28 -05:00
Michael Kuhn
97779e3539
adios: Fix build with gcc@10: (#16569) 2020-05-11 16:54:08 -05:00
asmaahassan90
1367b63e99
Add avizo version 2020.1 (#16567) 2020-05-11 12:56:50 -05:00
Adam J. Stewart
98fd62254f
py-plac: remove erroneous argparse dependency (#16584) 2020-05-11 12:56:07 -05:00
Michael Kuhn
5ed5c55ebd
mpich: Fix build with gcc@10: (#16568) 2020-05-11 12:55:36 -05:00
Massimiliano Culpo
43c9ad3421
Remove 'spack bootstrap' and associated docs (#15179) 
fixes #15145

This commit removes the outdated `spack bootstrap`
command and any reference to it in the documentation
and unit tests.
 2020-05-11 10:55:18 -07:00
Amjad Kotobi
4c666034dc
r-rstudioapi : new version (#16574) 2020-05-11 12:49:27 -05:00
Amjad Kotobi
3ddf6c0845
r-rlang : new version (#16575) 2020-05-11 12:48:51 -05:00
Amjad Kotobi
5e348f7133
r-digest : version updated (#16578) 2020-05-11 12:43:38 -05:00
Andrew Gaspar
2c009a3226
Map the spack skylake arch to Kokkos BDW, rather than SKX (#16583) 
SKX includes AVX-512 extensions that consumer Skylake processors do
not have. Therefore, map Skylake to the prior arch to work on
these systems. Skylake-X processors will still map as the
skylake_avx512 spack arch and get the correct optimzations.
 2020-05-11 12:33:34 -05:00
Justin S
20a4e5efe8
stata: add new libpng dependency (#16582) 2020-05-11 12:32:36 -05:00
Michael Kuhn
cd2e906702
netcdf-fortran: Fix build with gcc@10: (#16573) 2020-05-11 12:31:40 -05:00
Jen Herting
c220a22b69
New package: py-mmcv (#16536) 
* [py-mmcv] Created template

* [py-mmcv] added description and homepage

* [py-mmcv] requires python 3.6+

* [py-mmcv] added dependencies

* [py-mmcv] depends on opencv

* [py-mmcv] cleaned up fixmes

* [py-mmcv] requires numpy >= 1.11.1
 2020-05-11 12:14:22 -05:00
Michael Kuhn
03d0a7ee1e
gcc: added v10.1.0 (#16525) 2020-05-11 16:22:19 +02:00
Sinan
ff6a0fc7b0
py-configobj: remove url function (#16522) 
It seems the pypi version of the package somehow compiles just fine

Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
 2020-05-11 10:43:56 +02:00
takanori-ihara
e08792cbcb
py-jupyterlab: added package at v2.1.0 (#16562) 2020-05-11 10:35:44 +02:00
takanori-ihara
fa8dede6cd
Add new package:py-jupyterlab-server (#16561) 2020-05-10 21:32:53 -05:00
Adam J. Stewart
c03d4688e4
PyTorch: fix master and mkldnn builds (#16560) 2020-05-10 19:40:00 -05:00
Amjad Kotobi
7d3b40fba4
new version r-rcpp (#16549) 2020-05-10 17:39:20 -05:00
Amjad Kotobi
6c820dd6b5
new version r-glue (#16558) 2020-05-10 17:38:51 -05:00
Amjad Kotobi
36941e3d94
new version r-pkgbuild (#16559) 2020-05-10 17:38:38 -05:00
Amjad Kotobi
5dc51c21bb
new version r-jsonlite (#16557) 2020-05-10 17:38:26 -05:00
Amjad Kotobi
f32d561e9b
new version r-dt (#16555) 2020-05-10 15:31:58 -05:00
Amjad Kotobi
3210e5999e
new version r-covr (#16554) 2020-05-10 15:31:08 -05:00
Amjad Kotobi
ff869a7d68
new version r-callr (#16552) 2020-05-10 15:29:18 -05:00
Adam J. Stewart
358242d2a8
DGL: add new version (#16547) 2020-05-10 10:04:28 -05:00
Massimiliano Culpo
8c12030498 Fix MacOS tests on develop 
The -u option allows to update the current head,
so tests won't fail if we are on develop
 2020-05-09 17:41:57 -07:00
Axel Huebl
29105da445 macOS nightly: +1hr py-jupyter 
check if failures ares actually a real timeout or an error that
just causes a hang.
 2020-05-09 17:41:10 -07:00
Axel Huebl
2b234b7a66 macOS nightly: two cores 
All GitHub actions provide two cores. Just make sure this does not
get oversubscribed with potentially visible additional physical
cores.
 2020-05-09 17:41:10 -07:00
Massimiliano Culpo
05203ec3fb
Add unit test on MacOS using Github Actions (#14220) 
- Remove macos tests from travis
- Add macos tests in github actions.
 2020-05-09 13:35:14 -07:00
vvolkl
69ea6de069
[dd4hep] variant and run env updates (#16524) 
* [dd4hep] variant and run env updates

* address comments from #16524
 2020-05-09 14:54:07 -05:00
Larry Knox
6e46603470
Add maintainers and variants for building with default earlier api versions. (#16534) 
* Add maintainers.
Add variants for building with default earlier api versions.

* Update var/spack/repos/builtin/packages/hdf5/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-05-09 13:05:55 -05:00
Jen Herting
54fee4b400
New package: py-addict (#16535) 
* [py-addict] created template

* [py-addict] added homepage and description

* [py-addict] cleaned up fixmes

* [py-addict] depends on py-setuptools
 2020-05-09 13:05:33 -05:00