Commit graph

10072 commits

Author SHA1 Message Date
Adam J. Stewart
55d0d1814c Allow docs to be built with Sphinx 1.7.1+ (#8500)
* Allow docs to be built with Sphinx 1.7.1+

* Allow docs to be built with Sphinx 2.0+
2018-06-18 17:17:21 -07:00
Jon Rood
3e2636e10f Percept requires googletest to be a static library. (#8506) 2018-06-18 16:34:39 -05:00
twang15
ec1b2d0a3a samrai: update package for 3.12.0 and fix compilation bugs for earlier versions (#8501)
* SAMRAI: remove dependency on boost for samrai 3.12.0 or later versions, but keep the older versions ccontinuing working with boost 1.64.0 or earlier. Also, the older versions cannot compile with boost 1.65.0 or above. (#8491)

* SAMRAI: fix typos of comments and remove obsolete code.
2018-06-18 13:52:24 -05:00
Glen Hansen
d98d45ec50 Albany: Add Albany package. (#8332)
* Add package.py to support the Albany GitHub project builds.
2018-06-18 13:50:26 -05:00
Jon Rood
ef002a25fa Updates to Nalu package(s) (#8492)
* Updating Nalu now that it can build with shared libraries and adding the new Nalu-Wind wind energy focused application.

* Explicitly turn off TPLs for Nalu when not enabled.
2018-06-18 12:04:11 -05:00
Samuel Fux
46bf21f05e Adding patch to Opencv (3.3.0-3.4.1) for fixing conflict between CUDA and OpenCV dnn header file (#8502)
* Adding patch for OpenCV to fix a conflict between an OpenCV and a CUDA header file

* Added patch command to package.py file for OpenCV SPACK package.

* Adding version range for patch.

* shortening comment lines, since testsuite failed
2018-06-18 09:53:48 -05:00
George Hartzell
cb11e1b8ee There's only one 'u' in "configuration" (#8498) 2018-06-17 19:11:16 -05:00
Pramod Kumbhar
98f11b9def Add new versions for TAU and PDT package (#8497) 2018-06-17 17:21:00 -05:00
Jim Galarowicz
ec66e0fb7e Add changes to the Krell packages with version updates and ranges for the latest release. (#8468)
* Add changes to the Krell packages with version updates and ranges for the latest release.

* Add reviewer requested changes.  Remove preferred clauses and update the qt version for the cbtf-argonavis-gui@develop

* Trigger integration/test restart
2018-06-17 09:49:27 -05:00
Todd Gamblin
afe7964670
docs: remove vendored sphinx_rtd_theme (#8496) 2018-06-17 01:13:56 -07:00
Jon Rood
129e03a2e0 Trilinos needs parallel-netcdf as an explicit dependency to avoid concretization errors when netcdf is an external. (#8493) 2018-06-16 14:11:07 -05:00
Satish Balay
fe0fd6ef34 superlu_dist: 'master' is branch - not tag (#8495)
==> Trying to clone git repository: https://github.com/xiaoyeli/superlu_dist at tag master
Fetching tags only, you probably meant:
  git fetch --tags
2018-06-16 08:18:01 -05:00
Jon Rood
4e4457f820 SAMRAI: new versions, handle deprecation of boost in latest version. (#8494) 2018-06-15 22:53:59 -07:00
Adam J. Stewart
cea5d04a1e
Fix GDAL Python bindings and add import tests (#8482) 2018-06-15 10:14:50 -05:00
Pramod Kumbhar
a3a9b2ab2b Add newer likwid versions 4.3.1 and 4.3.2 (#8488) 2018-06-15 10:14:00 -05:00
Matthias Maiterth
a85981b250 Package/geopm: Update to version 0.5.0 (#8487) 2018-06-15 08:17:17 -05:00
Veselin Dobrev
a3c989ef3a [mfem] Add BLAS+LAPACK to the required dependencies of SuperLU_DIST. (#8485) 2018-06-15 11:34:04 +02:00
Todd Gamblin
5f852634cd openssl: add new version 1.0.2o (#8486) 2018-06-15 09:54:52 +02:00
Dan FitzGerald
d182d85dd1 Update the clang compiler definition to use IBM XL Fortran compiler (#8389)
on CORAL systems (linux-rhel7-ppc64le).
2018-06-14 20:51:45 -07:00
Dan FitzGerald
54aab585c4 Patch trilinos for xlf when using clang (#8391)
* Add patching for xlf when %clang.  Changes are effective only when Fortran compiler is 'XL'.
* Use the right version for trilinos when patching for seacas.
2018-06-14 20:48:43 -07:00
Dan FitzGerald
64d20a3955 Use no mangling for all spack compiler definitions that use the XL (#8392)
Fortran compiler.
Clang can build with IBM XL Fortran compiler as well, so the name
mangling shoud be avoided for that case as well.
2018-06-14 20:46:09 -07:00
Dan FitzGerald
a67b2e2942 Use the name of the Fortran compiler to determine what name mangling (#8393)
setting to use, instead of the spack compiler.

%clang can use multiple Fortran compilers with different options, so
we need to know what compiler is used in order to provide the correct
options.
2018-06-14 20:45:21 -07:00
健美猞猁
98d8bdebbe A new package: megahit. (#8471) 2018-06-14 13:45:12 -05:00
Matthias Wolf
75c0007cf8 neovim: add info for v0.3.0 (#8472) 2018-06-14 13:44:40 -05:00
Denis Davydov
53517c60b6 oce: add 0.18.3 (#8477) 2018-06-14 13:44:14 -05:00
Praveen C
34c08ed362 netgen should depend on zlib (#8473) 2018-06-14 13:43:43 -05:00
Denis Davydov
b5fcd62891 openblas: add 0.3.0 (#8478) 2018-06-14 13:43:05 -05:00
Denis Davydov
484e54d78e petsc: add 3.9.1 and 3.9.2 (#8479) 2018-06-14 13:42:12 -05:00
Denis Davydov
df657275e4 slepc: add 3.9.1 (#8480) 2018-06-14 13:41:52 -05:00
Denis Davydov
a878e76f93 superlu-dist: add 5.3.0 and 5.4.0 (#8481) 2018-06-14 13:41:35 -05:00
Serban Maerean
ee4050c58f boost package: patch dirent for pgi and boost 1.67 (#8313) 2018-06-13 15:53:14 -07:00
Satish Balay
eac8cf83bd xsdk: fix 'ChecksumError: md5 checksum failed' (#8440)
[error came up with the  prior url pointing to a 'master' branch. so fixing with a switch to a fixed tarball]
2018-06-13 13:46:38 -07:00
Satish Balay
2829ebd485 xsdk: update xsdk@develop dependency on mfem@develop (#8462) 2018-06-13 13:45:34 -07:00
Veselin Dobrev
a0c2a25a72 [mfem] new version: 3.4 (#8453)
* Add new version (3.4.0) with new variant (pumi).
* Fix an issue: skip the tests in examples/pumi as they require
files that are not included in the mfem distribution/repository.
* Use patches to fix the testing issues with PUMI and PETSc v3.9.
* Use the new bit.ly short link for v3.4.
2018-06-13 13:42:21 -07:00
Jim Galarowicz
674feb45f1 Add the ability to build the dyninst master branch under the develop version name. (#8455)
* Add the ability to build the dyninst master branch under the develop version name.  Fix elfutils and libdwarf to work with the various dyninst versions and vice-versa.

* Add reviewer suggested change to dyninst package file.  Remove colon in spec.satisfies clause.

* Add reviewer suggested change to dyninst package file. Remove duplicate lines.

* Add reviewer suggested change to dyninst package file. Encompass all versions under 10.0 with respect to using libdwarf in the build.
2018-06-13 13:35:32 -07:00
Timo Heister
758b813c36 new package: ASPECT (#8459)
* add ASPECT package

* add maintainer

* simplify
2018-06-13 14:42:29 -05:00
Axel Huebl
664f03e329 ADIOS: Revert Patch (#8463)
That patch is only a partial solution and does not solve the
issue. Revert is, unnecessary.
2018-06-13 14:42:13 -05:00
Axel Huebl
6d4909d69b Add: MPILander (#8464)
MPILander - There can only be one (MPI process)!

The final MPI implementation.
2018-06-13 14:40:51 -05:00
Michael Kuhn
04dce19155 gplates: new package (#8336)
This also adds an older 1.x version to gdal that is required by gplates.
2018-06-13 08:57:52 -05:00
Simone Bnà
470d4ddd96 openfoam-com: added submodule flag to git fetch (#8446) 2018-06-13 08:56:52 -05:00
Miles Perry
fa00a04e91 blasr-libcpp: new package (#8366)
* blasr-libcpp: new package

* blasr-libcpp: added version #, and moved make into build phase.

* blasr-libcpp: added prefix.include to PBBAM_INC, added version URL

* blasr-libcpp: indented comments, made list of configure_args, and added prefix.include

* blasr-libcpp: added setup_dependent_environment from blasr

* blasr-libcpp: fixed syntax for configure_args

* blasr-libcpp: fixed configure_args syntax

* blasr-libcpp: fixed syntax

* blasr-libcpp: syntaxtest

* blasr-libcpp: fixed def build error

* blasr-libcpp: edited dependent environment to move after install phase

* blasr-libcpp: rearranged build and install

* blasr-libcpp: added configure_args

* blasr-libcpp: fixed syntax error

* blasr-libcpp: removed .spec from INC and LIB alignment, pbdata, hdf

* blasr-libcpp: seperated configure args

* blasr-libcpp: edited configure and setup_dependent steps

* blasr-libcpp: added CPATH arg

* blasr-libcpp: C_INCLUDE_PATH

* blasr-libcpp: fixed install issues resulting from PacBio change
2018-06-13 08:55:31 -05:00
Satish Balay
c12855dce5 trilinos: use 'branch' option to specify branches such as develop/master [they are not tags] (#8448)
Fixes the following problem:

==> Installing trilinos
==> Warning: Suspicious requests to set or unset 'LD_LIBRARY_PATH' found
==> Warning: 	    	env.unset('LD_LIBRARY_PATH') at /home/balay/spack.new/lib/spack/spack/build_environment.py:269
==> Warning: 	--->	env.set('%s' % key, value) at /home/balay/spack.new/lib/spack/spack/build_environment.py:292
==> Trying to clone git repository: https://github.com/trilinos/Trilinos.git at tag develop
Fetching tags only, you probably meant:
  git fetch --tags
error: pathspec 'develop' did not match any file(s) known to git.
==> Fetching from [git] https://github.com/trilinos/Trilinos.git failed.
==> Error: FetchError: All fetchers failed for trilinos-develop-tgkpnctp6nn4imoizxlw4ymqyztcie4n
2018-06-13 08:54:53 -05:00
Timo Heister
b27da52e4b new package: dealii-parameter-gui (#8456) 2018-06-13 08:44:10 -05:00
Satish Balay
1d14ec7436 petsc: 'master' is a branch - not a tag - so fix it accordingly. (#8457) 2018-06-13 08:43:09 -05:00
Veselin Dobrev
683addc26d [GLVis] Add new version: 3.4 (#8454)
* [glvis] Add new version, 3.4; update all checksums to be SHA-256.

* [GLVis] Use the new bit.ly short link for v3.4.
2018-06-13 08:42:45 -05:00
Elizabeth Fischer
3cbae250f0 new package: pdftk (#8166) 2018-06-12 11:25:20 -07:00
Adam J. Stewart
0f1a1ae94e Add trailing slash when spidering URLs for versions (#8429)
By default, if a package does not specify a list_url and does not download from
a common repository, Spack runs dirname on the package URL. Given a URL
like https://root.cern.ch/download/root_v6.09.02.source.tar.gz, this returns
https://root.cern.ch/download. However, https://root.cern.ch/download
gives a 404, while https://root.cern.ch/download/ works just fine.

Note that some servers *don't* work with a trailing slash, so this tries with and
without the slash. This will double the number of URLs searched but the
slowdown should only affect the "spack versions" command.
2018-06-12 10:33:47 -07:00
Axel Huebl
583af6ef4f Package: ISAAC 1.4.0 (#8447) 2018-06-12 11:11:32 -05:00
Satish Balay
8e7d98c5fa superlu_dist: fix 'spack install superlu-dist@develop' (#8442)
Latest superlu_dist sources now use INCLUDEDIR.
This change should not affect older superlu_dist version builds
2018-06-12 08:21:10 -05:00
Massimiliano Culpo
004e9b8948 Fixed compilation of quantum-espresso (#8439)
The patch to select ELPA API needs to be applied to
version 6.2.0 too.

The link line of hdf5 is computed incorrectly from
the configuration part of the build-system. To fix
this the relevant file (make.inc) is patched.
2018-06-11 11:42:13 -05:00