* Ensure that every package has a license
Also fixes URLs with http://http:// doubled.
This is a continuation of #2656.
* Add license to every file in Spack
* Make sure Todd is the author of all packages
* Fix flake8 tests
* Don't license external Sphinx docs
* Don't display licenses in tutorial example packages
Also fixes typos and converts command-line examples
from tcsh to bash, which is more common
That's because in set_build_environment_variables()
the funciton filter_system_paths() is actually applied to
package prefixes, and not to prefix/lib or prefix/include.
* Added uuid: OSSP uuid is a ISO-C:1999 application programming interface
* Fixed install error in cmor package
* Added uuid: OSSP uuid is a ISO-C:1999 application programming interface
* Fixed install error in cmor package
* Modifiying fontconfig file to allow install in OpenSuse 13.2
* Adding pkg-config dependency to freetype and libxml2
* Removed first possible solution. With @adamjstewart selecting the one adding pkg-config to dependencies
The primary goal of #2292 was to use the frontend compiler to make
build dependencies like cmake on HPC platforms. It turns out that
while this works in some cases, it did not handle cases where a
package was a link dependency of the root and of a build dependency
(and could produce incorrect concretizations which would not build).
* Update digest for vim@8.0 tarball.
The digest appears to have changed.
The new digest value matches the value in their
[MD5SUMS](ftp://ftp.vim.org/pub/vim/unix/MD5SUMS)
file.
* Change ftp.vim.org -> github.com/vim/vim/archive
Vim seems to do weekly releases, but the name of the tarball on
ftp.vim.org doesn't change so we have to regularly play 'update the
digest' (aka Internet whack-a-mole).
This commit changes the url so that we are now downloading particular
versions from the Vim project's github archive.
I didn't walk back through of time to get all of the versions that
used to be explicit. I grabbed the final `7.4` and the current `8.0`
releases. If people need more we can add them.
* Better output for disambiguate_specs()
* Fix wrong exception name.
* Fix satsifies(): concrete specs require matching by hash.
- Fixes uninstall by hash and other places where we need to match a
specific spec.
- Fix an error in provider_index (satisfies() call was backwards)
- Fix an error in satisfies_dependencies(): checks were too shallow.
* Fix default args in Spec.tree()
* Move installed_dependents() to DB to avoid unknown package error.
* Make `spack find` and `sapck.store.db.query()` faster for hashes.
* Add a test to ensure satisfies() respects concrete Specs' hashes.
* Add package for fastqc
This tool is a java mess. Their Way To Do It is to just copy the entire
tree into it's final resting place, make the perl script at the top
level executable and take it from there.
Yuck.
This package assumes that `set_executable` actually sets all the user
bits. If that change doesn't go in, then something equivalent needs to
be done.
* Use chmod to make fastqc executable
I haven't gotten any feedback on changing set-executable, so switch to
using chmod (from the cuda package).
* Flake8 cleanup
* Install files neatly, don't just copy top level of dir
Rather than blindly copying everything in the distribution, carefully
put the necessary bits into reasonable places. Neatness counts, etc...
This requires patching the `fastqc` perl script, so this commit adds a
patch file.
* Additional pep8 cleanup
* Let dependency handle adding jdk to PATH
* Flake8 cleanup
* Ensure that java is on PATH
I thought that the run dependency on the jdk would put
java on my PATH, but it does not appear to work.
For now, do it by hand.
* Customization for make targets in build and test phases for AutotoolsPackage
* Updated Blitz++ to use customized make build and test targets
* Removed flake8 error
* Removed make test customization, added make install customization, need to figure out issues with multiple make targets
* Changed build_targets and install_targets to normal attributes
* py-markdown: Add new package for python-markdown.
* py-markdown: Added restrictions on Python version.
* py-markdown: Removed upper-limit on compatible Python versions.
* py-markdown: Reinstated upper bound on Python version. Also fixed small formatting error.
* MakefilePackage: changed build_args and install_args for consistency with #2464
openblas: derives from MakefilePackage
* MakefilePackage: changed default edit behavior
* Add python cdo support
* Correct pypi url
* Corrected a blanck space that was failing CI
* Corrected url that was failing CI
* Following @alalazo indications, Write this line wrapping it around 80 chars to pass Travis
* Added cdo package depency
