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Author SHA1 Message Date
Justin S
c2f45fb4da charmpp: fix build failing from broken hardlink (#13922) 
* charmpp: fix build failing from broken hardlink

* charmpp: use setup_dependent_build_environment
 2019-12-11 20:20:05 -06:00
Glenn Johnson
fec3a852c7 Fix replacement of embedded 'gcc' in augustus (#14116) 
PR #13975 added makefile filtering to replace gcc/g++ with the spack
compiler. This conflicts with other filtering that is done in the package to
add paths for dependencies. The text of the dependency paths might
have 'gcc' in the path name, depending on the install_path_scheme, and
that was being replaced by the new compiler filters. That would mangle
the path to the dependecy resulting in a failed build.

This PR moves the compiler filters to be before the other filters to
make sure that the compiler is set before the dependency paths.
 2019-12-11 20:19:27 -06:00
iarspider
695c09a8b7 Add missing dependency on setuptools to py-subprocess32 (#14074) 
* Add missing dependency on setuptools to py-subprocess32

* Update package.py

* Update var/spack/repos/builtin/packages/py-subprocess32/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py
 2019-12-11 20:18:39 -06:00
Brian Van Essen
53f73e280a Bugfix for bad hydrogen tags (#14119) 2019-12-11 20:17:10 -06:00
Adam J. Stewart
1f9d37c346
TensorFlow: must specify CUDA compute capabilities (#14118) 
* TensorFlow: must specify CUDA compute capabilities

* Correctly restrict cuda_arch version ranges
 2019-12-11 20:16:52 -06:00
Adam J. Stewart
7ec1917d9b
Add try-except for Python installation (#14122) 2019-12-11 20:16:33 -06:00
Adam J. Stewart
47615566ea
Fix JDK 8 download URLs (#14120) 2019-12-11 20:16:16 -06:00
iarspider
aac45154fd Fix py-ppft source extension (#14077) 
* Fix py-ppft source extension

* PEP-8 fix

* Update package.py

* Apply suggestions from code review

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-12-11 14:05:14 -06:00
iarspider
d07e988fbc Fix py-pox build recipe (#14078) 
* Fix py-pox build recipe

* PEP-8 fix

* Update package.py

* Apply suggestions from code review

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-12-11 14:04:50 -06:00
iarspider
a254f7011e Fix py-notebook for Python2 (#14079) 
* Fix py-notebook for Python2

* PEP-8 fix

* Update package.py

* Update package.py

* Syntax fix

* Update var/spack/repos/builtin/packages/py-notebook/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-12-11 14:04:33 -06:00
iarspider
34adebc7cf Fix py-hypothesis (#14084) 
* Fix py-hypothesis

* Update package.py

* Update package.py

* Update package.py
 2019-12-11 14:04:18 -06:00
Dan Lipsa
6f7a58b142 Fix constexpr for llvm 9.0 (#14095) 2019-12-11 14:03:57 -06:00
Adam J. Stewart
69a91b5b6b
Add grass 7.8.2 (#14115) 2019-12-11 14:00:38 -06:00
Brian Van Essen
ee0b9bfa5b Added new versions of hydrogen (#14103) 2019-12-11 12:23:25 -06:00
Michael Kuhn
927f496306 doxygen: Fix libiconv checks (#14106) 
PR #10589 introduced a libiconv dependency to doxygen. This causes
problems on Linux systems, since the iconv symbols are included in libc,
which causes CMake to use the external header but not the external
library. Work around this by always using the external libiconv.
 2019-12-11 12:22:59 -06:00
Glenn Johnson
f2979da2af Build xed CLI for the intel-xed package (#14114) 
The xed CLI is handy, and can be gotten by building the examples in the
intel-xed package. This PR builds the examples and installs the xed CLI.
It would also be possible to install more of the example binaries if
someone thinks they are useful.
 2019-12-11 12:13:27 -06:00
Mark Olesen
77482e102a openfoam relocated to https://develop.openfoam.com/Development/openfoam.git (#14101) 2019-12-11 12:12:30 -06:00
noguchi-k
b0a7c8487d diamond: fix narrowing error. (#14064) 
* diamond: fix narrowing error

* diamond: fix patch

* diamond: add link to the patch source
 2019-12-11 12:07:21 -06:00
iarspider
d4326038b9 Fix py-pkgconfig recipe (#14081) 
* Fix py-pkgconfig recipe

* Update package.py

* Proper fix for py-pkgconfig
 2019-12-11 12:06:18 -06:00
iarspider
bb3bae4bae Fix py-pathos source file extension (#14080) 
* Fix py-pathos source file extension

* PEP-8 fix

* Add version 0.2.3 to spack

* Update package.py
 2019-12-11 12:04:45 -06:00
iarspider
ec3d979899 Fix py-llvmlite (#14083) 
* Fix py-llvmlite

* Update package.py

* Add llvmlite 0.29

* Update package.py
 2019-12-11 12:03:48 -06:00
iarspider
5c2afd0535 Fix py-dill source archive extension (#14085) 
* Fix py-dill source archive extension

* Add py-dill 0.2.7, remove extra str()

* Update package.py

* Update package.py

* Update package.py
 2019-12-11 12:03:28 -06:00
Howard Pritchard
e7a03d07b6 llvm: fix for building llvm using Cray PE (#12734) 
Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
 2019-12-11 11:51:44 -06:00
iarspider
3cd6ca02d2 Fix json-c package (#14087) 
* Fix json-c package

* Fix PEP-8

* Update package.py

* Update package.py
 2019-12-10 17:34:50 -06:00
iarspider
ec060f3d9c Fix libgeotiff dependency of gdal (#14089) 
* Fix libgeotiff dependency of gdal

* Update package.py

* Fix typo

* Update package.py
 2019-12-10 17:34:35 -06:00
Justin S
2c31776007 openmolcas: new package at 19.11 (#14099) 
* openmolcas: new package at 19.11

* openmolcas: fill description

* openmolcas: rewrite using CMakePackage

* openmolcas: add py-six dep

* openmolcas: use setup_build_environment, setup_run_environment

* openmolcas: remove redundant cmake dep

* openmolcas: explicitly cast Executable to str
 2019-12-10 17:33:52 -06:00
iarspider
5b3b522861 Alternative locations for tclConfig and tkConfig (#14071) 
* Alternative locations for tclConfig and tkConfig

* Fix PEP-8
 2019-12-10 15:18:19 -06:00
Eric Berquist
33f603734d Update tmux to 3.0a (#14096) 
* Add tmux@2.9 and tmux@3.0a

* Fix checksums
 2019-12-10 15:06:21 -06:00
Christoph Junghans
34f0195de8 gromacs-2018.8: fix checksum (#14069) 2019-12-10 12:33:41 -06:00
iarspider
fb6d29adfa ROOT: +http variant doesn't require any external dependency (#14072) 2019-12-10 12:29:11 -06:00
iarspider
f96216cf40 Fix py-pyasn1 version for py-pyasn1-modules (#14076) 2019-12-10 12:26:16 -06:00
iarspider
122264609e Fix for DD4Hep build: can't find boost (#14091) 2019-12-10 11:58:52 -06:00
iarspider
dd67868ef6 More variants for cairo (#14092) 2019-12-10 11:58:37 -06:00
Simo Tuomisto
9e8204d075 openfoam-org: Adding openfoam-org versions 6 and 7. (#12859) 
This commit adds openfoam-org versions 6 and 7. It also adding new variant for metis and fixes openfoam-org's old environment modification functions.
 2019-12-10 09:42:01 -06:00
Mark W. Krentel
c627e5a6fc intel-tbb: fix and cleanup patch version ranges (#14053) 
Recent commit e9ee9eaf (#13989) fixed testing version ranges inside
patch when clauses.  Previously, it was necessary to write all revs
individually for packages with multiple length version numbers (2019
and 2019.1).

This fixes the build for the old 2017.* versions.
 2019-12-09 17:11:47 -06:00
Adam J. Stewart
23faffa2d0
TensorFlow: don't override HOME env var (#14054) 2019-12-09 11:22:57 -06:00
Matt Larsen
919a5421b7 fix incorrect gpu arch map for vtk-m package (#14057) 2019-12-09 11:18:51 -06:00
Adam J. Stewart
aa8d5d2e8c
cbtf-krell: fix missing dependencies (#14021) 2019-12-08 15:51:04 -06:00
Adam J. Stewart
2266aab5c5
Add new r-condop package (#14050) 2019-12-08 09:29:51 -06:00
Adam J. Stewart
c72568d01b
Add new r-earth package (#14049) 2019-12-08 09:06:53 -06:00
Adam J. Stewart
bf9661f18a
Add new r-plotmo package (#14048) 2019-12-08 09:06:37 -06:00
Adam J. Stewart
0c1599403d
Add new r-teachingdemos package (#14047) 2019-12-08 09:06:20 -06:00
Adam J. Stewart
cb258daf88
Add new r-graphlayouts package (#14046) 2019-12-08 09:06:04 -06:00
Adam J. Stewart
4593b7b693
Add new r-tidygraph package (#14045) 2019-12-08 09:05:46 -06:00
Adam J. Stewart
3547776921
py-torch: comment out non-existing deps (#14044) 2019-12-08 09:05:21 -06:00
Adam J. Stewart
aca67581e8
Add new py-requests-mock package (#14043) 2019-12-08 09:05:04 -06:00
Adam J. Stewart
99d2bcf64e
py-luigi: fix test dependencies (#14042) 2019-12-08 09:04:45 -06:00
Christoph Junghans
16a61d1422 elpa: port to microarch (#13655) 
* elpa: port to microarch

* flake8

* Update package.py

* Update var/spack/repos/builtin/packages/elpa/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-12-08 09:03:59 -06:00
Adam J. Stewart
4e24c4ca5f
Add new py-pytest-mypy package (#14041) 2019-12-08 00:10:46 -06:00
Adam J. Stewart
4fb03f7222
Add new py-sphinxcontrib-issuetracker package (#14040) 2019-12-08 00:10:32 -06:00