Commit graph

16953 commits

Author SHA1 Message Date
Peter Scheibel
2e387ef585
Package hashing: fix detection of directives (#14763)
The hashing logic looks for function calls that are Spack directives.
It expects that when a Spack directive is used that it is referenced
directly by name, and that the directive function is not itself
retrieved by calling another function. When the hashing logic
encountered a function call where the function was determined
dynamically, it would fail (attempting to access a name attribute
that does not happen to exist in this case).

This updates the hashing logic to filter out function calls where the
function is determined dynamically when looking for uses of Spack
directives.
2020-02-20 13:45:58 -08:00
Anthony Scemama
01bda12692
libf77zmq (#15125)
* libf77zmq

* Cleaning mkdirp

* Removed install function

* Renamed to f77-zmq

* Fixed Flake8

* Fixed Flake8
2020-02-20 15:34:25 -06:00
iarspider
c5134ff4f2
Add extra version of py-terminado (#15111)
* Add extra version of py-terminado

* Update package.py

* Update var/spack/repos/builtin/packages/py-terminado/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-20 15:30:43 -06:00
iarspider
19af86592b
Add extra version of py-tornado; update dependencies (#15112)
* Add extra version of py-tornado

* Update package.py

* Update package.py

* Update package.py
2020-02-20 15:29:54 -06:00
iarspider
ea9aa2c7cb
Add extra version of py-typing (#15113)
* Add extra version of py-typing

* Update package.py

* Fix typo

* Update package.py
2020-02-20 15:29:12 -06:00
iarspider
0d84ee6c68
Add extra version of py-sympy (#15110)
* Add extra version of py-sympy

* Update package.py
2020-02-20 15:28:45 -06:00
iarspider
e4968a495d
Add extra version of py-widgetsnbextension (#15105)
* Add extra version of py-widgetsnbextension

* Update dependency version

* Update package.py

* Update package.py

* Update var/spack/repos/builtin/packages/py-widgetsnbextension/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-20 15:28:09 -06:00
iarspider
c784799895
Add extra version of py-urllib3 (#15114)
* Add extra version of py-urllib3

* Update package.py

* Update package.py

* Update package.py

* Update var/spack/repos/builtin/packages/py-urllib3/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-20 15:27:39 -06:00
iarspider
b5b19084de
Add extra version of py-wheel (#15116)
* Add extra version of py-wheel

* Update package.py

* Update package.py
2020-02-20 15:26:59 -06:00
iarspider
8b72cb64dd
Add extra version of vc (#15119)
* Add extra version of vc

* Update package.py

* Update package.py

* Update var/spack/repos/builtin/packages/vc/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-20 15:26:07 -06:00
Patrick Gartung
dd0e18d7b8
Use get_spec in relocated _try_install_from_binary_cache (#15131)
* Use get_spec in relocated _try_install_from_binary_cache
2020-02-20 13:07:32 -08:00
Massimiliano Culpo
d1929b2ea7
Compilers require an exact match on version during concretization (#14752)
Spack now requires an exact match of the compiler version
requested by the user. A loose constraint can be given to
Spack by using a version range instead of a concrete version
(e.g. 4.5: instead of 4.5).
2020-02-20 12:20:12 -08:00
Seth R. Johnson
a1e3a1653a
Mark binutils-related conflicts (#15075)
* Mark conflicts with binutils on darwin

* Explicitly require binutils bootstrapping and mark conflict with nvptx

* Disable gold variant by default on darwin
2020-02-20 12:00:48 -06:00
snehring
f5b5036ad5
adding package igv (#15096)
* igv: adding package igv

* removing some remaining initial boilerplate

* changing path construction to be more correct

* adding in type for java dep, also forgot about prefix.bin etc
2020-02-20 11:45:57 -06:00
iarspider
40410102d2
Add extra version of py-werkzeug (#15115) 2020-02-20 11:35:28 -06:00
iarspider
b538885b08
Add extra version of py-wrapt (#15117) 2020-02-20 11:31:53 -06:00
iarspider
d9b8a9a8b3
Add extra version of py-zipp (#15118)
* Add extra version of py-zipp

* Update package.py
2020-02-20 11:31:01 -06:00
iarspider
545c436d33
Add extra version of xrootd (#15124) 2020-02-20 10:55:37 -06:00
iarspider
0ea7b83e71
Add extra version of py-setuptools (#15106) 2020-02-20 09:58:19 -06:00
iarspider
186ca13cf0
Add extra version of vecgeom (#15121) 2020-02-20 09:57:33 -06:00
iarspider
674c4379ee
Add extra version of xapian-core (#15122) 2020-02-20 09:57:07 -06:00
iarspider
308a6bc601
Add extra version of xerces-c (#15123) 2020-02-20 09:56:47 -06:00
iarspider
43f8e9a260
Add extra version of prometheus-client (#15067)
* Add extra version of py-prometheus-client

* Update package.py

* Update package.py
2020-02-20 09:55:39 -06:00
iarspider
98895297b5
Add extra version of py-py4j (#15065)
* Add extra version of py-py4j

* Add test dependencies

* Update package.py
2020-02-20 09:55:15 -06:00
iarspider
64887e4821
Add extra version of py-sip (#15108) 2020-02-20 09:53:38 -06:00
iarspider
4e2a5388ac
Add extra version of py-qtconsole (#15083)
* Add extra version of py-qtconsole

* Update package.py

* Update package.py
2020-02-20 09:53:04 -06:00
iarspider
9a5fa90c25
Add extra version of py-pyshp (#15072)
* Add extra version of py-pyshp

* Update package.py
2020-02-20 09:52:23 -06:00
Anthony Scemama
d98b98aae6
Package for IRPF90 (#15076)
* Added IRPF90 package

* PEP8

* SHA256

* Update var/spack/repos/builtin/packages/py-irpf90/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-20 09:50:21 -06:00
iarspider
4d62dda17a
Add extra version of py-multiprocess (#15043)
* Add extra version of py-multiprocess

* Update dependency version

* Add url_for_version

* Flake-8

* Update package.py
2020-02-19 23:11:49 -06:00
iarspider
a02aadb4db
Add extra version of py-packaging (#15047)
* Add extra version of py-packaging

* Update py-packaging

`attrs` dependency was only in 19.1
2020-02-19 23:09:45 -06:00
Dr. Christian Tacke
22a56a89c7
Use shutil.copy2 in install_tree (#15058)
Sometimes one needs to preserve the (relative order) of
mtimes on installed files.  So it's better to just copy
over all the metadata from the source tree to the install
tree. If permissions need fixing, that will be done anyway
afterwards.

One major use case are resource()s:
They're unpacked in one place and then copied to their
final place using install_tree(). If the resource is a
source tree using autoconf/automake, resetting mtimes
uncorrectly might force unwanted autoconf/etc calls.
2020-02-19 23:09:26 -06:00
iarspider
a47ab9c6b2
Add extra version of py-psutil (#15063)
* Add extra version of py-psutil

* Add optional dependency on enum34

* Update package.py

* Remove unused enum variant
2020-02-19 23:09:07 -06:00
iarspider
ef9ab2ebc4
Add extra version of py-ptyprocess (#15064) 2020-02-19 23:08:30 -06:00
iarspider
0be09abd9c
Add extra version of py-pylint (#15068)
* Add extra version of py-pylint

* Update dependencies
2020-02-19 23:04:11 -06:00
Dr. Christian Tacke
66c3f89b78
libfabric: Always install fabtests (#15081)
libfabric used to install fabtests only when installed
using --test. fabtests has tools that are useful on a
running system, so they should be installed always.

* Rewrote the build/install part to always install
  fabtests alongside libfabric.
* Updated a few fabtests resources.
* Updated the test related stuff. Works for most versions
  now.
* Include tcp and udp fabrics so that the test suite works.
2020-02-19 22:59:16 -06:00
iarspider
47e8084fab
Add extra version of py-python-gitlab (#15074)
* Add extra version of py-python-gitlab

* Update dependency version
2020-02-19 22:56:10 -06:00
iarspider
d9d863330b
Add extra version of py-rsa (#15084) 2020-02-19 22:55:12 -06:00
iarspider
e258326133
Add extra version of py-scandir (#15085) 2020-02-19 22:54:07 -06:00
Adam J. Stewart
7a60a04402
Docs: configure_args -> cmake_args (#15102) 2020-02-19 22:48:56 -06:00
Mark W. Krentel
9b221d26b8
hpctoolkit: adjust libunwind dependency (#15099)
Change hpctoolkit's dependency on libunwind from 2018.10.12 to 1.4:.
In libunwind, 2018.10.12 is going away in favor of 1.4-rc1 (they're
nearly identical commits).

Remove the 'gpu' version.  This was a temporary branch that is now
folded into master.
2020-02-19 18:42:51 -06:00
Glenn Johnson
4cd1a5660e
py-notebook: make py-setuptools a run dependency (#15095)
* py-notebook: make py-setuptools a run dependency

The py-setuptools dependency in py-notebook needs to be a run
dependency. The following message is received if it is not in the run
environment.

Traceback (most recent call last):  File "/opt/ssoft/apps/2020.1/linu
x-centos7-sandybridge/gcc-9.2.0/py-notebook-6.0.1-6usbn4c/bin/jupyter-notebook",
line 6, in <module>
    from pkg_resources import load_entry_point
Module NotFoundError: No module named 'pkg_resources'

* Remove extraneous whitespace
2020-02-19 18:41:27 -06:00
Oliver Breitwieser
65133daad7
Fix relocate.mime_type if slashes in subtype (#11788)
If the mimetype returned from `file -h -b --mime-type` contains slashes
in its subtype, the tuple returned from `spack.relocate.mime_type` will
have a size larger than two, which leads to errors.

Change-Id: I31de477e69f114ffdc9ae122d00c573f5f749dbb
2020-02-19 17:30:17 -06:00
iarspider
8825335056
Add extra version of py-scikit-learn (#15087) 2020-02-19 14:51:25 -06:00
iarspider
d1cbc14022
Add extra version of py-prompt-toolkit (#15062) 2020-02-19 14:50:30 -06:00
iarspider
f4d91cc3ec
Add extra version of py-pickleshare (#15059)
* Add extra version of py-pickleshare

* Fix dependencies

* Flake-8
2020-02-19 13:37:36 -06:00
iarspider
c969fffbf0
Add extra version of py-pillow (#15060) 2020-02-19 13:35:22 -06:00
iarspider
1d986c3790
Add extra version of py-pip (#15061) 2020-02-19 13:34:56 -06:00
iarspider
f9b857f1b0
Add extra version of py-pyasn1 (#15066) 2020-02-19 13:32:23 -06:00
iarspider
3331b70f20
Add extra version of py-pyparsing (#15069) 2020-02-19 13:29:43 -06:00
iarspider
0c8738a860
Add extra version of py-pyproj (#15070) 2020-02-19 13:28:56 -06:00