Commit graph

11135 commits

Author SHA1 Message Date
vvolkl
c2791a4baa
[dd4hep] fix python setup (#16461) 2020-05-05 08:25:26 -05:00
Benjamin Tovar
f1bb0f8aad
cctools to 7.1.5 (#16450)
* change homepage to readthedocs

* update cctools version to 7.1.5

* change http to https
2020-05-05 08:24:42 -05:00
Christoph Junghans
04cb1800a6
lammps: added v20200505 (#16463) 2020-05-05 09:54:30 +02:00
Adam J. Stewart
b9ed788589
py-shapely: add master version (#16465) 2020-05-04 23:42:17 -05:00
Elizabeth Fischer
4c323e49bf
libspatialite: Update for proj@6 (#16173)
* libspatialite

* flake8

* Added proper version constrain

* Update var/spack/repos/builtin/packages/libspatialite/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/libspatialite/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-04 19:44:54 -05:00
Elizabeth Fischer
76bd143c30
libsecret (#16174)
* libsecret

* Update package.py

Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
2020-05-04 19:44:23 -05:00
vvolkl
e575ba2773
bugfix: Update run-time dependencies of py-xenv (#16460)
Otherwise, if I run `xenv` after `spack load py-xenv` it fails with:
```
Traceback (most recent call last):
  File "/home/vavolkl/spack/opt/spack/linux-centos7-broadwell/gcc-8.3.0/py-xenv-develop_2018-12-20-lqbxakapsepqo5w3sjhhokj5o7c5jei2/bin/xenv", line 6, in <module>
    from pkg_resources import load_entry_point
ModuleNotFoundError: No module named 'pkg_resources'
```
2020-05-04 19:41:19 -05:00
vvolkl
befd472594
[gaudi] fixes and patches (#16433)
* [gaudi] fixes and patches

* Update var/spack/repos/builtin/packages/gaudi/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/gaudi/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* [gaudi] add older versions and fold +tests into +optional

* [gaudi] set run environment

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-04 19:40:13 -05:00
Amjad Kotobi
6c07260d27
ecFlow added UI & GUI flag with new version (#16444)
* ecFlow added UI & GUI flag with new version

* Fix1
2020-05-04 16:57:06 -05:00
Elizabeth Fischer
5adf703414
py-palletable: Add new version (#16445)
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
2020-05-04 16:55:54 -05:00
Elizabeth Fischer
43d2c7f3b5
py-cf-units: Add new version (#16446)
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
2020-05-04 16:53:12 -05:00
René Widera
e808a52176
update isaac and issac-server to v1.5.0 (#16452)
Update package.py with the latest release [ISAAC v1.5.0].
2020-05-04 16:47:12 -05:00
Matthias Diener
fe350224b6
pocl: add version 1.5 (#16455)
* pocl: add version 1.5

* update clang version
2020-05-04 16:46:30 -05:00
Matthias Diener
0a4e078648
hwloc: add version 2.2.0 (#16456) 2020-05-04 16:45:55 -05:00
Shintaro Iwasaki
0475edfbf2
BOLT: add 1.0 (#16457) 2020-05-04 16:45:28 -05:00
Shintaro Iwasaki
acf0c90283
argobots: mark 1.0 as preferred (#16458)
By default, Spack chooses 1.0rc2 instead of 1.0 though 1.0 is the stable and
newer release.  We manually mark the version 1.0 as preferred.
2020-05-04 16:44:50 -05:00
Elizabeth Fischer
dea5d913db
Updates to Python for macOS (#16449)
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
2020-05-04 16:30:59 -05:00
Elizabeth Fischer
7b31f5474b
grass: new versions (#16181)
* grass

* Update var/spack/repos/builtin/packages/grass/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-04 16:25:19 -05:00
Axel Huebl
87f78137a5
LAPACKC++: added "shared" variant (#16419)
We can control the shared/static build of CMake and the default in
Spack is to build shared libraries. The old, uncontrolled default
of this package is a static build.
2020-05-04 09:39:20 +02:00
Dr. Christian Tacke
d5adad6953
singularity: added missing dependencies (#16430)
See:

https://sylabs.io/guides/3.5/user-guide/quick_start.html#install-system-dependencies

for pkg-config and libseccomp
2020-05-04 09:02:38 +02:00
Nichols A. Romero
860c54335d
QE-to-QMCPACK wave function converter relocation + some bug fixes (#16422)
* Revise description of patch variant.

* Add qmcpack variant. Apply QE-to-QMCPACK wave function converter patch.

* Clean-up, document, and re-organize.

* ELPA patches did not nead when=`+patch` variant.

* Need to be more precise here with QE version numbers.

* satisfies seems to be necessary here in order to get correct behaviour.

* Buglet with zlib link line.

* Update var/spack/repos/builtin/packages/quantum-espresso/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/quantum-espresso/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Fix for QE-to-QMCPACK wave function converter w.r.t. QE 6.3. Also adjust comments to reflect changes in code.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-03 14:53:01 -06:00
Adam J. Stewart
caad59e7c7
NumPy: add 1.18.4 (#16441) 2020-05-03 13:29:15 -05:00
vvolkl
ed9e19df06
Add new HEP package: fastjet (#16439)
* [fastjet] initial commit

* [fastjet] remove beta versions
2020-05-03 13:27:18 -05:00
vvolkl
3c2f46aabf
Add new HEP package: Delphes (#16440)
* [delphes] initial commit

* [delphes] formatting fixes
2020-05-03 11:13:03 -05:00
Adam J. Stewart
1af31d24fd
GEOS: add new version (#16437) 2020-05-02 23:38:46 -05:00
Adam J. Stewart
eb4451dd1e
py-shapely: new version, Python 3.7 fix (#16438) 2020-05-02 23:38:30 -05:00
Adam J. Stewart
2e63e08192
py-cartopy: update package, fix PROJ.6 support (#16436) 2020-05-02 20:13:12 -05:00
Matthias Diener
1bc104e00e
colordiff: add version 1.0.19 (#16431) 2020-05-02 13:26:56 -05:00
Jonathon Anderson
08f88b4be6
Add a gpfs variant to openmpi package (#15793)
Open MPI will detect and link against GPFS if it is present
on the system. This variant allows this to be disabled, even
if GPFS is present.
2020-05-02 11:07:50 -05:00
Sajid Ali
adafdf0644
add hydra/pmix conflict (#16428) 2020-05-01 20:51:54 -05:00
Matthias Diener
668dcb78a1
py-opentuner: add version 0.8.2 (#16423) 2020-05-01 20:50:54 -05:00
Jen Herting
acabe2deba
[ncbi-magicblast] added version 1.5.0 (#16424) 2020-05-01 20:50:26 -05:00
Justin S
cf59220edc
stata: add version 16 (#16425) 2020-05-01 20:50:13 -05:00
mic84
c7552c0c72
amrex: New version 20.05 (#16427) 2020-05-01 20:47:18 -05:00
Kelly (KT) Thompson
b5b7ef2ce6
Provide update for py-pyside2 version 5.14.2.1. (#16426) 2020-05-01 17:32:31 -05:00
Justin S
f38820f89c
tbl2asn: new package at 20200301 (#16280)
* tbl2asn: new package at 20200301

* tbl2asn: remove unused url

* tbl2asn: use spack decompression, fix permissions

* tbl2asn: change version
2020-05-01 16:40:09 -05:00
Toyohisa Kameyama
40f70c4d4f
mt-metis: New package. (#16380)
* mt-metis: New package.

* variant to 1 line.

* delete useless lines.
2020-05-01 10:51:27 -05:00
Matt Larsen
69a0fbd2cb
raja: add awareness of the cuda architecture (#16377) 2020-05-01 10:07:12 +02:00
Jean-Laurent Picard
4f6c4743e3
arborx: fix build with new kokkos-legacy (#16413) 2020-05-01 09:30:27 +02:00
Christoph Junghans
7a56e6fce1
gromacs: add v2020.2 (#16408) 2020-04-30 19:01:07 -06:00
Satish Balay
4c69bc9d16
amrex: repo went through history rewrite - so use updates sha256sums (#16379) 2020-04-30 15:13:45 -05:00
Michael Kuhn
a24a12f229
sqlite: Add 3.31.1 (#16404) 2020-04-30 15:12:51 -05:00
Michael Kuhn
efbd8c1555
readline: Fix homepage (#16403) 2020-04-30 15:12:38 -05:00
Michael Kuhn
9920684600
gettext: Add 0.20.2 (#16402) 2020-04-30 15:12:26 -05:00
Michael Kuhn
f04b0d99a8
glib: Add 2.64.2 (#16401) 2020-04-30 15:12:13 -05:00
Michael Kuhn
d2fc61a019
libffi: Add 3.3 (#16400) 2020-04-30 15:12:00 -05:00
Michael Kuhn
c2704a6037
perl: Add 5.30.2 (#16396) 2020-04-30 15:11:46 -05:00
Michael Kuhn
7adcb23978
libxml2: Add 2.9.10 (#16399) 2020-04-30 14:29:50 -05:00
Michael Kuhn
15c1fbc677
meson: Add 0.54.1 (#16398) 2020-04-30 14:29:36 -05:00
Michael Kuhn
6855e8e10f
pcre: Add 8.44 (#16397) 2020-04-30 14:29:24 -05:00