Commit graph

13514 commits

Author SHA1 Message Date
Michael Kuhn
c25f15b7d5
libx11: added v1.7.0 (#20035) 2020-11-23 11:13:33 +01:00
Michael Kuhn
d7db6068c5
libxcb, xcb-proto: added v1.14 versions (#20036)
At least xcb-proto 1.14.1 is only avaiable from the new URL, so change
both to be future-proof.
2020-11-23 11:13:09 +01:00
Martin Aumüller
236796577d
botan: added v2.17.0, v2.17.1 and v2.17.2 (#20037) 2020-11-23 11:11:51 +01:00
Pramod Kumbhar
92d540fde7
Add sionlib and linktest packages (#20034)
* Add sionlib and linktest packages

* fix flake8
2020-11-22 09:22:26 -06:00
Thomas Gruber
4609a126ba
Add new release 5.1.0 and change homepage (#20022) 2020-11-21 00:02:08 +01:00
Martin Oberzalek
439b329c38
openldap: enable creation of static libraries (#20013) 2020-11-20 13:51:25 +01:00
psakievich
f613e10f24
Trilinos: Add CUDA relocatable code flag (#19993)
* Add relocatable code flag to trilinos

* Make CUDA RDC and varainat

* adjust default of cuda_rdc
2020-11-19 19:24:42 -05:00
Josh Essman
f92e52cdc8
mfem: Add support for AmgX, fix to version extensions (#19990)
* fix: leading . is not needed in extension kwarg

* mfem: add support for NVIDIA AmgX

fix: proper spacing

* mfem: use conflict to indicate that AmgX is expected to depend on CUDA
2020-11-19 14:03:22 -06:00
Axel Huebl
16d5cc2c99
ADIOS2: ~dataman default (#20003)
Disable dataman by default. It pulls heavy dependencies that are
often not needed for HPC (ZMQ) and it currently does not link
with popular compilers.
2020-11-19 13:56:51 -06:00
Massimiliano Culpo
d6e44b94d6
globalarrays: added v5.8 and earlier, simplified recipe (#19999)
fixes #19966

Global arrays supports GCC 10 since version 5.7.1,
therefore a conflict has been added to avoid old
releases to error at build-time.

Removed the 'blas' and 'lapack' variant since
BLAS and LAPACK are always a dependency, and
if not specified during configure, a version
of these APIs vendored with Global Arrays is
built.

Fixed a few options in configuration.
2020-11-19 11:58:54 -06:00
Brian Van Essen
5015635506
Removed accidental command to not expand the tarball. (#20001) 2020-11-19 11:58:25 -06:00
Dr. Christian Tacke
c417827954
cmake: Add Version 3.19.0 (#19996) 2020-11-19 10:43:52 -06:00
Sreenivasa Murthy Kolam
e75b76f433
bump up version for rocm 3.9.0 (#19995) 2020-11-19 07:40:24 -06:00
Toyohisa Kameyama
1522d1fac6
simde: New package (#19992)
* simde: New package

* remove 0.5.0.
2020-11-19 07:38:50 -06:00
Nithin Senthil Kumar
5129d84304
mvapich2: extended the fabrics variant description (#19860)
The point of this variant is to give the end user an option to use system
installed fabrics such as mofed instead of upstream fabrics such as rdma-core.
This was found to avoid run time errors on some systems.

Co-authored-by: nithintsk <nithintsk@github.com>
2020-11-19 13:47:57 +01:00
Michael Kuhn
1b7a5e53a6
clang/llvm: fix version detection (#19978)
This PR fixes two problems with clang/llvm's version detection. clang's
version output looks like this:

```
clang version 11.0.0
Target: x86_64-unknown-linux-gnu
```

This caused clang's version to be misdetected as:

```
clang@11.0.0
Target:
```

This resulted in errors when trying to actually use it as a compiler.

When using `spack external find`, we couldn't determine the compiler
version, resulting in errors like this:

```
==> Warning: "llvm@11.0.0+clang+lld+lldb" has been detected on the system but will not be added to packages.yaml [reason=c compiler not found for llvm@11.0.0+clang+lld+lldb]
```

Changing the regex to only match until the end of the line fixes these
problems.

Fixes: #19473
2020-11-19 11:06:45 +01:00
Michael Kuhn
dd54cb4c7a
llvm: add missing pkgconfig dependency (#19982)
When building llvm with CUDA support, it needs to find libffi. Without
pkg-config, libffi will not be found.
2020-11-19 10:34:13 +01:00
Brian Van Essen
db9b7a509a
cuDNN Refactor to accommodate architecture and CUDA version (#19989)
* Updated the cuDNN recipe to generate the proper version names for only
the arhcitecture that you are on.  This prevents the concretizer from
selecting a source code version that is incompatible with your current
architecture.  Additionally, add constraints to ensure that the
corresponding CUDA version is properly set as well.

* Added maintainer

* Fixed renaming for darwin systems

* Fixed flake8

* Fixed flake8

* Fixed range typo

* Update var/spack/repos/builtin/packages/cudnn/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Fixed style issues

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-18 22:56:39 -06:00
eugeneswalker
a2801a1384
openblas@0.3.11 conflicts with gcc less than 8.3.0 (#19975) 2020-11-18 22:52:31 -06:00
Andreas Baumbach
cb22bcf6f1
drop unnecessary tk dependency of py-git-review (#19969)
* seems to have been introduced errorously by users using gitk-based
  workflows. This should be handled by the git package
* fixes build problems on OSX bigsur
2020-11-18 22:51:47 -06:00
t-nojiri
c9aac3e221
openloops: Fix for aarch64 (#19965) 2020-11-18 22:49:04 -06:00
arjun-raj-kuppala
a680df8453
AMD ROCm 3.9.0 release: Bump up version for aomp, roctracer-dev (#19957)
* AMD ROCm 3.9.0 release: Bump up version for aomp, roctracer-dev and updates to hip/hip-rocclr

* Update package.py
2020-11-18 22:47:10 -06:00
Matthias Diener
932f128bc8
charmpp: various fixes (#19956)
* charmpp: various fixes

- change URLs to https
- address deprecated/renamed versions
- make it build with the cmake build system

* flake8

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-18 22:45:57 -06:00
Adam J. Stewart
95f5419502
py-ipykernel: fix bug in phase method (#19986)
* py-ipykernel: fix bug in phase method

* Fix bug in executable calling
2020-11-18 18:45:29 -08:00
Enrico Usai
bc5c475909
aws-parallelcluster: 2.10.0 release (#19976)
Updated boto3 dependency and removed useless comments.
2020-11-18 19:27:04 -06:00
Danny Taller
3b9155239b
hip support for umpire, chai, raja, camp (#19715)
* create HipPackage base class and do some refactoring

* comments and added conflict to raja for openmp with hip
2020-11-18 11:52:21 -08:00
Cyrus Harrison
676d68a979
add 0.6.0 conduit release and update for branch changes (#19696) 2020-11-18 12:34:14 -06:00
vvolkl
3069631f37
Add "hep" label to high energy physics packages (#19968)
* [hep] add hep tag to relevant packages

* [lcio] add hep label
2020-11-18 17:07:35 +00:00
Dr. Christian Tacke
eca1370abc
root: Add +spectrum variant to enable TSpectrum (#19971) 2020-11-18 16:37:37 +00:00
Axel Huebl
8b431d1774
py-ipykernel: fix install (#19617)
There is a post-install routine in `ipykernel` that needs to be
called for proper registration with jupyter.
2020-11-18 07:34:12 -06:00
Wouter Deconinck
a0a15b5cd0
qt: patch missing includes when +opengl %gcc@10: (#19963) 2020-11-18 07:51:51 -05:00
Massimiliano Culpo
532fc40e94
clingo: add master branch version (#19958)
* updated @master to point to the master branch
* also added a @spack that points to a fixed commit
2020-11-18 04:21:55 -08:00
Greg Becker
77b2e578ec
spack test (#15702)
Users can add test() methods to their packages to run smoke tests on
installations with the new `spack test` command (the old `spack test` is
now `spack unit-test`). spack test is environment-aware, so you can
`spack install` an environment and then run `spack test run` to run smoke
tests on all of its packages. Historical test logs can be perused with
`spack test results`. Generic smoke tests for MPI implementations, C,
C++, and Fortran compilers as well as specific smoke tests for 18
packages.

Inside the test method, individual tests can be run separately (and
continue to run best-effort after a test failure) using the `run_test`
method. The `run_test` method encapsulates finding test executables,
running and checking return codes, checking output, and error handling.

This handles the following trickier aspects of testing with direct
support in Spack's package API:

- [x] Caching source or intermediate build files at build time for
      use at test time.
- [x] Test dependencies,
- [x] packages that require a compiler for testing (such as library only
      packages).

See the packaging guide for more details on using Spack testing support.
Included is support for package.py files for virtual packages. This does
not change the Spack interface, but is a major change in internals.

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
Co-authored-by: wspear <wjspear@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-18 02:39:02 -08:00
sameershende
b81bbfb6e9
Added -level_zero -rocm -opencl flags and sha256 for TAU v2.30. (#19962)
* Added -level_zero -rocm -opencl flags and sha256 for TAU v2.30.

* Removed the depends_on clause for OpenCL and added a variant for OneAPI level_zero.

* remove depends_on rocm

* remove depends_on rocprofiler

Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2020-11-17 19:09:24 -08:00
Massimiliano Culpo
7ffad278d3 concretizer: modified weights for providers and matching for externals
This commit address the case of concretizing a root spec with a
transitive conditional dependency on a virtual package, provided
by an external. Before these modifications default variant values
for the dependency bringing in the virtual package were not
respected, and the external package providing the virtual was added
to the DAG.

The issue stems from two facts:
- Selecting a provider has higher precedence than selecting default variants
- To ensure that an external is preferred, we used a negative weight

To solve it we shift all the providers weight so that:
- External providers have a weight of 0
- Non external provider have a weight of 10 or more

Using a weight of zero for external providers is such that having
an external provider, if present, or not having a provider at all
has the same effect on the higher priority minimization.

Also fixed a few minor bugs in concretize.lp, that were causing
spurious entries in the final answer set.

Cleaned concretize.lp from leftover rules.
2020-11-17 10:04:13 -08:00
Massimiliano Culpo
9a03fd2834 concretizer: don't require a provider for virtual deps if spec is external
This commit introduces a new rule:

real_node(Package) :- not external(Package), node(Package).

that permits to distinguish between an external node and a
real node that shouldn't trim dependency. It solves the
case of concretizing ninja with an external Python.
2020-11-17 10:04:13 -08:00
Massimiliano Culpo
e0ae60edc4 Added unit tests to for regressions on open concretizer bugs 2020-11-17 10:04:13 -08:00
Massimiliano Culpo
930b05fab4 Add unit tests for dependencies being patched by parent 2020-11-17 10:04:13 -08:00
Massimiliano Culpo
e7208b1598 tests: verify to handle dependencies conditional on other dependencies 2020-11-17 10:04:13 -08:00
Massimiliano Culpo
d00e8394f8 concretizer: handle conflicts with compiler ranges correctly
As reported, conflicts with compiler ranges were not treated
correctly. This commit adds tests to verify the expected behavior
for the new concretizer.

The new rules to enforce a correct behavior involve:
- Adding a rule to prefer the compiler selected for
  the root package, if no other preference is set
- Give a strong negative weight to compiler preferences
  expressed in packages.yaml
- Maximize on compiler AND compiler version match
2020-11-17 10:04:13 -08:00
Massimiliano Culpo
d4b83daa48 concretizer: added logic for preferred variants
If preferred variants are present, they'll
set the default value of a variant. Otherwise
the default value is what is encoded
in package.py
2020-11-17 10:04:13 -08:00
Themos Tsikas
72bc6cdf61
Build 7036 of Nag Fortran Compiler (#19954)
updated sha256sum of download .tgz
2020-11-17 11:14:22 -06:00
t-nojiri
7562e53a5a
clfft: Fix for aarch64 (#19873)
* clfft: Fix for aarch64

* clfft: Changed the patch application conditions.

* clfft: Changed Patch file
2020-11-17 09:59:14 -06:00
Keita Iwabuchi
8ba0ee7a0e
Metall package: add v0.7 (#19950)
* Metall: add version 0.2

* Add Metall v0.3

* Update Metall package to v0.4 and v0.5.

* Metall package: add v0.6

* Metall package: add v0.7
2020-11-17 09:58:36 -06:00
Tamara Dahlgren
6fa6af1070
Support parallel environment builds (#18131)
As of #13100, Spack installs the dependencies of a _single_ spec in parallel.
Environments, when installed, can only get parallelism from each individual
spec, as they're installed in order.  This PR makes entire environments build
in parallel by extending Spack's package installer to accept multiple root
specs.  The install command and Environment class have been updated to use
the new parallel install method.

The specs and kwargs for each *uninstalled* package (when not force-replacing
installations) of an environment are collected, passed to the `PackageInstaller`,
and processed using a single build queue.

This introduces a `BuildRequest` class to track install arguments, and it
significantly cleans up the code used to track package ids during installation.
Package ids in the build queue are now just DAG hashes as you would expect,

Other tasks:

- [x] Finish updating the unit tests based on `PackageInstaller`'s use of
      `BuildRequest` and the associated changes
- [x] Change `environment.py`'s `install_all` to use the `PackageInstaller` directly
- [x] Change the `install` command to leverage the new installation process for multiple specs
- [x] Change install output messages for external packages, e.g.:
       `[+] /usr` -> `[+] /usr (external bzip2-1.0.8-<dag-hash>`
- [x] Fix incomplete environment install's view setup/update and not confirming all 
       packages are installed (?)
- [x] Ensure externally installed package dependencies are properly accounted for in 
       remaining build tasks
- [x] Add tests for coverage (if insufficient and can identity the appropriate, uncovered non-comment lines)
- [x] Add documentation
- [x] Resolve multi-compiler environment install issues
- [x] Fix issue with environment installation reporting (restore CDash/JUnit reports)
2020-11-17 02:41:07 -08:00
vvolkl
ee5ae14a3b
[xerces-c] add netaccessor variant, new version (#19927)
* [xerces-c] add netaccessor variant, new version

* [geant4] add xerces-c netaccessor requirement

* [xerces-c] format
2020-11-16 16:12:53 -06:00
Wouter Deconinck
8752fc5872
[pythia6] needs CFLAGS/FFLAGS=-fcommon when %gcc@10: (#19947) 2020-11-16 16:12:20 -06:00
Jordan Ogas
385f5b8c53
node-js add gcc 4.8 conflict (#19945)
* add gcc 4.8 conflict

* commit suggestion

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-16 16:11:26 -06:00
eugeneswalker
81a7ae2c27
llvm: add variant: llvm_dylib (LLVM_BUILD_LLVM_DYLIB:Bool) (#19701) 2020-11-16 14:10:20 -08:00
Phil Tooley
42008e532f
WRF: Add version 3.9.1.1 and improve recipe robustness (#19882)
* Add WRF 3.9.1.1 and improve recipe robustness

* Include version 3.9.1.1 as common benchmarking workload
* Fix compilation against recent glibc (detect spack installed libtirpc)
* Detect and handle failed compilation (upstream use make -i)

* WRF: PR changes round 1
fix build jobs
fix maintainers
fix pkgconfig dependency
use Executable to run compile stage
repair some overzealous autoformatting by black

* WRF: make recipe py26 compatible

* wrf: recipe review changes round 2

* more python 26 fixes
2020-11-16 15:56:39 -06:00