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6059 commits

Author SHA1 Message Date
Luca Heltai
c25759e1c8 Added gsl dependency to pnfft (#8255) 2018-05-24 16:24:47 -05:00
Geoff Womeldorff
fdb2d6f493 kokkos: update kokkos spackage to add current host/gpu architectures. (#8226) 
* kokkos: update kokkos spackage to add current host/gpu architectures.

* kokkos: simplify host/gpu architecture selection and make intent of arg population logic more clear.

* kokkos: mollify flake8.

* Make strings and logic more pythonic. Add error for GPU arch without CUDA.

* kokkos: simplify conflicts behaviour. make args population more pythonic.

* kokkos: move gpu values to list for use in variant and conflicts checking.

* kokkos: How fortunate the man with None.

* kokkos: fix gpu_arch conflict loop error. add conflict to guard against +cuda and 2.5.00:develop versions, until kokkos issue #1296 is resolved.

* kokkos: mollify flake8.

* kokkos: add descriptive message to version conflict with +cuda.
 2018-05-24 10:53:58 -05:00
Matthias Diener
4c4e2866d8 Charm++: Add possibility to build git version (#8260) 2018-05-24 10:48:37 -05:00
Sajid Ali
5fff4da5b7 Add msgpack-c 3.0.1 (#8264) 
* 	new file:   cpp-3.0.1.tar.gz
	modified:   package.py

* 	deleted:    cpp-3.0.1.tar.gz

* remove whitespace
 2018-05-24 10:47:31 -05:00
Levi Baber
fdf889264e trf: make executable (#8265) 2018-05-24 10:47:17 -05:00
Chris Hadjigeorgiou
db4062b01f openfoam-org: add v2.4.0 (#7850) 
Add 2.4.0 changes
 2018-05-24 08:44:41 -07:00
jkelling
fa1153d116 Fix MD5 hash for opencv 3.2.0 and 3.1.0 release (#8241) 2018-05-24 08:59:11 -05:00
George Hartzell
80e4c7da0e Add info for datamash@1.3 (#8261) 2018-05-23 18:40:14 -05:00
Adam J. Stewart
9b9980256f
Add kealib 1.4.7 (#8235) 
* Add kealib 1.4.7

* Fix out-of-source builds

* Remove username from kealib hg clone
 2018-05-23 18:36:12 -05:00
Adam J. Stewart
8f3d717a30
Add PROJ 5.0.1 (#8233) 
* Add PROJ 5.0.1

* proj-datumgrid resource must be placed in nad directory
 2018-05-23 13:29:08 -05:00
Massimiliano Culpo
0ea8c4f3b2 mvapich2: added a proper libs attribute (#8253) 2018-05-23 13:28:21 -05:00
Adam J. Stewart
13a1575452
Add pkgconf 1.4.2 (#8256) 2018-05-23 13:27:39 -05:00
Adam J. Stewart
f57ce38c41
Add ncurses 6.1 (#8257) 2018-05-23 13:27:22 -05:00
Edward Kim
011d1245fb charm: Update install script (#7291) 
* charm: Update install script

* Addressed PR comments

* Removed destination and suffix variants

* Added back parallel support
 2018-05-23 13:26:59 -05:00
Massimiliano Culpo
9fee111741 gromacs: added version 2018.1 (#8251) 2018-05-23 10:13:09 -05:00
Massimiliano Culpo
251019c5e4 cgal: added version 4.12 (#8252) 2018-05-23 10:11:03 -05:00
Tim Law
60df206648 Update BookLeaf_Cpp and Typhon packages. (#8249) 2018-05-23 07:28:15 -05:00
Leonhard Reichenbach
ace283d594 Add latest versions of bazel (#8250) 2018-05-23 07:27:45 -05:00
Sinan
bc73e85af8 Package/mirdeep/fix for new url take2 (#8247) 
* rename: mirdeep -> mirdeep2

* fixes for new url
 2018-05-23 07:25:42 -05:00
Leonhard Reichenbach
3712ac1f66 Create new package: memkind (#8242) 
* Create new package: memkind

* some style changes

* fix type of numactl dependency

* fix flake8 errors

* use patch() instead of a custom build phase
 2018-05-22 13:37:03 -05:00
Adam J. Stewart
4d3ed1ff13
Add py-docopt package (#8236) 2018-05-22 10:49:12 -05:00
Massimiliano Culpo
0106c6cab7
subread: added version 1.6.2 (#8239) 2018-05-22 14:16:06 +02:00
Axel Huebl
cd72312940 CUDA 9.2 (#8238) 
Add the latest CUDA release, v9.2 and updated CUDA Compatibility Matrix
 2018-05-22 12:45:47 +02:00
Tim Stavenger
b61175aeba Update GlobalArrays package to new releases (#7840) 
* update globalarrays package to current releases

* rename class to Globalarrays to match package folder

* rename bytes to int64, minor cleanup of descriptions

* int64 False by default

* remove reference to external as we aren't supplying paths, and use args.append()

* correcting args.append syntax

* add conflicts
 2018-05-21 20:06:29 -05:00
Elizabeth Fischer
68e7fd053e gdbm: Get working on CentOS5 and Other Older Systems (#8134) 
* Fix #7691

* flake8

* code review
 2018-05-21 16:24:38 -05:00
Elizabeth Fischer
90d36016ef netcdf-cxx4: Update to use CPPFLAGS (#8148) 
* Fix bug; don't know why this ever worked in the first place.

* Add fix to netcdf-fortran too; flake8

* Simplify configure_args()

* netcdf-fortran: simplify that too
 2018-05-21 16:23:35 -05:00
lingnanyuan
646771300d Create new package: fastgbs and its dependency platypus. (#8174) 
* pushing partially done recipe for fast-gbs and platypus

* modify platypus

* change header

* fast-gbs: change dependency type.

* modify dependency type.

* modify dependency type.

* fast-gbs: Change dependency type to run.
 2018-05-21 16:13:05 -05:00
peetsv
2cfde03a60 r-cghflasso v0 2 1 - new package (#8177) 
* py-pyfaidx: adding new package

* updating the url

* r-cghflasso v0.2-1 new package

* correcting copy/paste error

* adding list_url
 2018-05-21 16:12:35 -05:00
Jim Galarowicz
d7aaf4e193 Add urls into cbtf* and openspeedshop* package files and update the release versions for the Krell products (#8188) 2018-05-21 16:03:31 -05:00
Dan FitzGerald
8564be5479 Rename Tpetra C wrappers for *gemm Fortran functions in Trilinos 12.12.1 (#8228) 
* Updated trilinos to compile/install with xl_r

* Undo PGI patch added as part of Trilinos XL fix

* Remove PGI related changes in Trilinos XL fix
 2018-05-21 16:00:10 -05:00
Adam J. Stewart
fba365dc6a
Add Python/Ruby bindings to GEOS package (#8218) 
* Add python/ruby bindings to GEOS package

* Add comment on Python 3 support
 2018-05-21 15:59:50 -05:00
Adam J. Stewart
ac2b0f3ac0
Add lcms 2.9 (#8219) 2018-05-21 15:59:11 -05:00
Adam J. Stewart
ed0f5e9b4c
Add missing dependencies to poppler package (#8220) 2018-05-21 15:58:51 -05:00
Adam J. Stewart
729c3f9168
Add bmake 20180512 (#8221) 
* Add bmake 20180512

* Re-add manpage patch
 2018-05-21 15:58:11 -05:00
Eric
6ec603860a py-testinfra: Add versions 1.12.0 and 1.13.0 (#8222) 2018-05-21 15:57:25 -05:00
mcneish1
15634c20fe Update the hash of libjpeg v9c. (#8230) 
The maintainer redid the archive in March, removing a .directory file.
 2018-05-21 15:53:55 -05:00
Adam J. Stewart
6bf9f66567
Add cryptopp 7.0.0 (#8224) 2018-05-21 11:52:25 -05:00
Massimiliano Culpo
e933ed2b50
Updated sbt to point to github. Added versions 1.1.4, 0.13.17. (#7951) 2018-05-21 16:58:23 +02:00
Adam J. Stewart
7e04b20f3e
Add PCRE2 10.31 (#8214) 2018-05-20 15:05:47 -05:00
Adam J. Stewart
7b5c76552a
Add PCRE 8.42 (#8213) 2018-05-20 15:05:29 -05:00
Adam J. Stewart
e0d7e8ebd2
Add sqlite 3.23.1 (#8212) 2018-05-20 15:05:11 -05:00
Adam J. Stewart
a5d2e59320
Add libxml2 2.9.8 (#8211) 2018-05-20 15:04:47 -05:00
Adam J. Stewart
478c99ce01
Add cURL 7.60.0 (#8210) 2018-05-20 15:04:28 -05:00
Adam J. Stewart
e0dad09ea2
Add Xerces-C++ 3.2.1 (#8208) 2018-05-20 15:04:06 -05:00
Adam J. Stewart
15d102acec
Add FYBA package (#8205) 2018-05-20 15:03:38 -05:00
Adam J. Stewart
04687598c9
Add libgeotiff package (#8203) 2018-05-20 15:02:49 -05:00
Adam J. Stewart
0a47db5088
Add xz 5.2.4 (#8202) 2018-05-20 15:01:33 -05:00
Adam J. Stewart
17e6260d4b
Add libtiff 4.0.9 (#8201) 2018-05-20 15:01:11 -05:00
peetsv
1ec0f37897 r-utf8 v1.1.3 - New package (#8206) 
* py-pyfaidx: adding new package

* updating the url

* r-utf8 v1.1.3 - New package

* adding list_url
 2018-05-19 16:23:03 -05:00
peetsv
f9c35b2f04 r-spatial v7.3.11 - New package (#8204) 
* py-pyfaidx: adding new package

* updating the url

* r-spatial v7.3.11 - New package
 2018-05-19 13:12:47 -05:00