Commit graph

682 commits

Author SHA1 Message Date
Todd Gamblin
c1e57e49ae Merge pull request #202 from scheibelp/features/unittest-xml-output-nose
Features/unittest xml output nose
2016-01-17 19:14:49 -08:00
Tom Scogland
4ae98f8b21 significant llvm update
This update significantly reworks the llvm and clang packages.  The llvm
package now includes variants allowing it to build and install any and
all of:

* clang
* lldb
* llvm's libunwind (why, WHY did they name it this?!?)
* polly (including building it directly into the clang tools, 3.7.0 only)
* clang extra tools
* compiler-rt (sanitizers)
* clang lto (the gold linker plugin that allows same to work)
* libcxx/libcxxabi
* libopenmp, also setting the default openmp runtime to same, when
  parameters happen this shoudl be an option of libomp or libgomp

Ideally, this should have rpath setup like the gcc package does, but
clang's driver has no support for specs as such, and no clearly
equivalent mechanism either.  If anyone has ideas on this, they would be
welcome.

One significant note related to gcc though, if you test this on LLNL
systems, or anywhere that has multiple GCCs straddling the dwarf2
boundary and sharing a libstdc++, build a gcc with spack and use that to
build clang.  If you use a gcc4.8+  to build this with an older
libstdc++ it will fail on missing unwind symbols because of the
discrepancy.

Resource handling has been changed slightly to move the unpacked archive
into the target rather than use symlinks, because symlinks break certain
kinds of relative paths, and orders resource staging such that nested
resources are unpacked after outer ones.
2015-12-30 16:59:39 -08:00
Tom Scogland
fcdf08e4d7 allow nested resources
This solution doesn't really make me happy, but does seem to work.  It
sorts the resources by the length of the string representing their
destination.  Since any nested resource must contain another resource's
name in its path, it seems that should work, but there should be a
better way to do this.
2015-12-30 16:59:39 -08:00
Tom Scogland
cc8c783bb2 adding errno import for the deep directory creation patch 2015-12-30 16:59:39 -08:00
Tom Scogland
30f5ccb80d create leading directories for resources
This allows resources to be placed into subdirectory trees that may not
exist in the base package, and may depend on other resources to be
staged later.
2015-12-30 16:59:39 -08:00
Todd Gamblin
487ac9cd19 Merge pull request #277 from LLNL/bugfix/vcs-mirror-fetch
Fix #85 and #228: errors fetching VCS packages from a mirror.
2015-12-26 09:28:38 -08:00
Todd Gamblin
52625de52c Fix #154 -- better log messages for do_patch() 2015-12-24 11:37:40 -08:00
Todd Gamblin
f37f872e5f Fix #85 and #228: errors fetching VCS packages from a mirror.
- Stage and fetcher were not being set up properly when fetching using
  a different fetch strategy than the default one for the package.

- This is fixed but fetch/stage/mirror logic is still too complicated
  and long-term needs a rethink.

- Spack will now print a warning when fetching a checksum-less tarball
  from a mirror -- users should be careful to use https or local
  filesystem mirrors for this.
2015-12-23 16:23:58 -08:00
Todd Gamblin
5ca5884ad6 Fix #235: Smarter web spidering -- use parsed links instead of reconstructing.
- Move `find_versions_of_archive` from spack.package to `spack.util.web`.

- `spider` funciton now just uses the link parsing it already does to
  return links.  We evaluate actual links found in the scraped pages
  instead of trying to reconstruct them naively.

- Add `spack url-parse` command, which you can use to show how Spack
  interprets the name and version in a URL.
2015-12-23 13:16:57 -08:00
Todd Gamblin
d63cb8b537 Fix bug in URL regex. 2015-12-22 17:05:23 -08:00
Todd Gamblin
0d4b77a24b revert accidental print statements. 2015-12-22 17:02:14 -08:00
Todd Gamblin
2b89d9b1db More consistent URL parsing when finding versions.
Versions found by wildcard URLs are different from versions found by
parse_version, etc.  The wildcards are constructed more haphazardly
than the very specific URL patterns in url.py, so they can get things
wrong.  e.g., for this URL:

    https://software.lanl.gov/MeshTools/trac/attachment/wiki/WikiStart/mstk-2.25rc1.tgz

We miss the 'rc' and only return 2.25r as the version if we ONLY use
URL wildcards.

Future: Maybe use the regexes from url.py to scrape web pages, and
then compare them for similarity with the original URL, instead of
trying to make a structured wildcard URL pattern?  This might yield
better results.
2015-12-22 16:59:00 -08:00
Todd Gamblin
b1d40efd99 Merge pull request #261 from LLNL/features/prefer-versions-in-packages
Add ability to prefer particular versions in packages.
2015-12-22 08:25:52 -08:00
Todd Gamblin
157e42de22 Merge pull request #264 from nolta/typos
fix a few comment typos
2015-12-22 07:56:54 -08:00
Todd Gamblin
792b033255 Slightly more robust tmp directory search.
- remove getcwd() check (seems arbitrary -- if users set their TMPDIR
  to this why stop them?)

- try a number of common locations and try per-user directories in
  them first.
2015-12-22 07:54:25 -08:00
Mike Nolta
61f07b0c4d fix a few comment typos 2015-12-21 19:24:16 -05:00
Mike Nolta
2ba6bb21fb fix #249 (tmp spack-stage directories conflict) 2015-12-21 18:50:58 -05:00
Todd Gamblin
fe0fdf60b4 Add ability to prefer particular versions in packages.
- Adding `preferred=True` to a version directive will change its sort
  order in concretization.

- This provides us a rudimentary ability to keep the Spack stack
  stable as new versions are added.

- Having multiple stacks will come next, but this at least allows us
  to specify default versions of things instead of always taking the
  newest.
2015-12-21 15:35:47 -08:00
Todd Gamblin
73ea15db8e Merge pull request #208 from epfl-scitas/features/resource_directive
resource directive : implementation + clang / llvm use case
2015-12-21 10:34:16 -08:00
Todd Gamblin
dccfcd10f7 Merge pull request #255 from LLNL/bugfix/254-libtool-compiler-name-issues
Fix #254: libtool & distutils want certain compiler names.
2015-12-20 16:56:59 -08:00
Todd Gamblin
1b086c928c Merge pull request #227 from trws/fetch-deps
fetch: add options to fetch missing or all deps
2015-12-19 21:02:42 -08:00
Todd Gamblin
9edba18489 Merge pull request #230 from nolta/fix-env-mod-sys-type
fix environment module path when $SYS_TYPE isn't defined
2015-12-19 20:59:13 -08:00
Todd Gamblin
32f96b5c73 Fix stale code in python version test so that it actually works. 2015-12-19 20:04:00 -08:00
Mike Nolta
429e15c4a6 spack python: add -c option
Allows passing program in as a string. Example:

    $ spack python -c 'print 2+3'
    5

Also imports spack module by default into the environment.
2015-12-19 16:32:17 -05:00
Gregory Lee
df5dc1c9bb Merge pull request #253 from LLNL/bugfix/244-uninstall-errors
Bugfix/244 uninstall errors
2015-12-19 08:06:36 -08:00
Todd Gamblin
7cc4d88726 Fix #254: libtool & distutils want certain compiler names.
This changes the compiler wrappers so that they are called by the same
name as the wrapped compiler.  Many builds make assumptions about
compiler names, and we need the spack compilers to be recognizable so
that build systems will get their flags right.

This adds per-compiler subdirectories to lib/spack/spack/env directory
that contain symlinks to cc for the C, C++, F77, and F90
compilers. The build now sets CC, CXX, F77, and F90 to point to these
links instead of to the generically named cc, c++, f77, and f90
wrappers.
2015-12-19 02:06:47 -08:00
Todd Gamblin
52e3364efa Fix #244: errors on uninstall
- Extension logic didn't take conditional deps into account.

- Extension methods now check for whether the extnesion is
  in the extendee map AND whether the dependency is actually present
  in the spec yet.
2015-12-18 22:24:35 -08:00
Todd Gamblin
b7e926eef6 minor formatting. 2015-12-18 22:24:22 -08:00
Todd Gamblin
ce8bd20944 Fix import error. 2015-12-18 22:23:51 -08:00
Todd Gamblin
abd3d3946d Format to 80 char width. 2015-12-18 19:23:45 -08:00
Gregory Lee
9cab88071b Merge pull request #239 from LLNL/bugfix/238-db-specs-not-concrete
Fix #238: Database specs need to be concrete when read in as well.
2015-12-16 11:37:51 -08:00
Mike Nolta
82aa366adf minor comment tweak in modules.py 2015-12-16 11:43:07 -05:00
Todd Gamblin
2f9ee88408 Fix #238: Database specs need to be concrete when read in as well. 2015-12-15 17:15:37 -08:00
Todd Gamblin
6e074a196a Fix #206: need to make deps AND root concrete when read in. 2015-12-14 21:06:32 -08:00
Todd Gamblin
afbd0e77d0 Make internal hash dep sort order match external one. 2015-12-11 16:47:34 -08:00
Todd Gamblin
3dd6cbc556 Fix #217: update spec_dag test for new _cmp_key. 2015-12-11 13:07:20 -08:00
Todd Gamblin
6ee2eb21dd Fix #217: Use MUCH faster hashing, reduce number of DAG copies.
This changes the hash algorithm so that it does much less object
allocation and copying, and so that it is correct.

The old version of `_cmp_key()` would call `sorted_deps`, which would
call `flat_dependencies` to get a list of dependencies so that it
could sort them in alphabetical order.  This isn't necessary in the
`_cmp_key()`, and in fact we want more DAG structure than that to be
included in the `_cmp_key()`.

The new version constructs a tuple without copying the Spec DAG, and
the tuple contains hashes of sub-DAGs that are computed recursively
in-place.  This is way faster than the previous algorithm and reduces
the numebr of copies significantly. It is also a correct DAG hash.

Example timing and copy counts for the different hashing algorithms
we've tried:

Original (wrong) Spec hash:
```
106,170 copies
real    0m5.024s
user    0m4.949s
sys     0m0.104s
```

Spec hash using YAML `dag_hash()`:
```
3,794 copies
real    0m5.024s
user    0m4.949s
sys     0m0.104s

New no-copy, no-YAML hash:
```
3,594 copies
real    0m2.543s
user    0m2.435s
sys     0m0.104s
```

So now we have a hash that is correct AND faster.

The remaining ~3k copies happen mostly during concretization, and as
all packages are initially loaded.  I believe this is because Spack
currently has to load all packages to figure out virtual dependency
information; it could also be becasue there ar a lot of lookups of
partial specs in concretize.  I can investigate this further.
2015-12-11 12:40:27 -08:00
Todd Gamblin
7526a89463 Fix #217: Make package cache use DAG hash instead of sorted deps.
- Gets rid of last vestige of old-style specs.
- Uses new hashing for lookup
2015-12-11 02:17:17 -08:00
Tom Scogland
281a869ef6 fix path resolution for mirror packages, especially with dependency fetching 2015-12-10 09:24:01 -08:00
Tom Scogland
786f4cd2c2 add dependency fetching to mirror creation 2015-12-10 08:32:51 -08:00
Tom Scogland
25f2b01a3c fetch: add options to fetch missing or all deps
Small additions to fetch to make it easier to fetch all files necessary for a
build on a system without network connectivity.
2015-12-10 07:27:06 -08:00
alalazo
20e67bc5e6 clang : solve the issue with missing default include paths for OpenMP and libc++
resource : support for finer grained linking of resources
2015-12-09 17:15:26 +01:00
Todd Gamblin
537451f0b1 bugfix: doc build needed additional sys.path due to externals change. 2015-12-09 01:32:12 -08:00
Todd Gamblin
c41b9b7ddc Change github.com/scalability-llnl to github.com/llnl everywhere. 2015-12-09 01:24:15 -08:00
Peter Scheibel
530e049d4a Added nose 1.3.7 source along with with the lgpl license (renamed from lgpl.txt
to LICENSE)
2015-12-04 17:55:20 -08:00
Massimiliano Culpo
50bd4d2e4e mirror : deals correctly with variants that optionally enable resources (if they are archive URLs) 2015-12-03 11:21:11 +01:00
Massimiliano Culpo
39a3cfd4d9 reource directive accepts 'basename' keyword
llvm : libc++ variant
2015-12-02 12:24:37 +01:00
Massimiliano Culpo
4b2168ab8e resources : added missing check after fetch 2015-12-02 10:13:39 +01:00
Massimiliano Culpo
b85dccca92 resources : added error handling for destination keyword on resource directive 2015-12-01 15:12:26 +01:00
Massimiliano Culpo
d3d9b5401b resources : changed name of stage folder 2015-12-01 13:26:44 +01:00