Commit graph

6267 commits

Author SHA1 Message Date
George Hartzell
47aa8053e9 Install the shell completion scripts (#3784)
* Install the shell completion scripts

Install the `git-completion.{bash,tcsh,zsh}` and `git-prompt.sh` into
`$(spack location -i git)/share/` (aka `prefix.share/`).

* Use copy_tree to copy all the files

The dest dir already exists, so install_tree()'s not an option.
2017-04-11 07:39:03 -05:00
healther
74b1f2b860 Fixup gcc@4.9{0,1,2} build on darwin (#3789) 2017-04-11 07:37:44 -05:00
Brian Van Essen
808e9b4649 Added a package for the MDAnalysis toolkit. (#3576)
* Added a package for the MDAnalysis toolkit.

* Added the dependency on setuptools.

* Added the rest of the dependencies to the py-mdanalysis package.  Also
added the griddataformats and seaborn packages to satisfy requirements.

* Removed seaborn package since it has been recently added.

* Fixed flake8 error

* Removed inadvertent commits.

* Cleaned up reviewers feedback.
2017-04-10 21:02:32 -05:00
Adam J. Stewart
4627655704 Rename libson-c to json-c, add new version (#3776) 2017-04-10 15:09:59 -05:00
George Hartzell
4acc36d188 Fix build, add version info for 1.3.0 (#3773)
Update the package recipe w.r.t. AutotoolsPackage changes,
now builds "out of source".

Update the package with version info for 1.3.0.

> Mosh 1.3.0 released, with John Hood as release lead. The release includes broader platform compatibility, robustness improvements, better testing, and fixes for excess CPU consumption in some cases. We have switched to semver.org-style versioning and will increment the minor version number whenever we add new functionality. (In our previous practice, this release would probably have been called “1.2.7.”)

Tested on CentOS 7.
2017-04-10 11:12:49 -05:00
Denis Davydov
c9da92dc97 doc: start with known issues section (#3722) 2017-04-10 08:20:57 -05:00
healther
5008973d99 Fix namespaced python packages (#3757)
* Fix namespaced python packages

* Update package.py

* Update package.py

* fix typo
2017-04-10 08:12:57 -05:00
健美猫
77673f4c42 A new package: cudnn. (#3770) 2017-04-10 07:27:15 -05:00
Adam J. Stewart
8e4ada5e99 Make it more clear that version ranges are inclusive (#3759) 2017-04-10 07:25:48 -05:00
健美猫
87818abf21 A new pacakge: hstr(hh). (#3769) 2017-04-09 11:56:49 -05:00
Adam J. Stewart
bd9213a55f Append system PKG_CONFIG_PATH on Cray instead of prepend (#3766) 2017-04-08 20:50:16 -05:00
Michael Kuhn
b91bf0e067 Update libbson and libmongoc to 1.6.2 (#3767) 2017-04-08 06:40:55 -05:00
George Hartzell
bf9dcc4a10 Add info for go@1.8.1 (#3765) 2017-04-07 16:50:08 -05:00
Mark C. Miller
a2afe984c0 Adding ZFP version 0.5.1 and variant for uint8 bit stream word type (#3753)
* adding 0.5.1 and variant for uint8 bit stream word type

* Revisions as per davydden

* fixing style (flake8) issues

* - switched to derive from MakefilePackage
- fixed typo in variant check
- Confirmed installs correctly with bswtuint8 variant

* added build method; changed zfp_incdir to incdir
2017-04-07 15:00:32 -05:00
Massimiliano Culpo
28e20313ac lmod: added new version (#3763) 2017-04-07 14:32:32 -05:00
Todd Gamblin
d995f9a314 Disable OpenSSL test dependency until we have proper support. (#3760) 2017-04-07 14:14:02 -05:00
Adam J. Stewart
ed4f276b68 Add a package for the NAS Parallel Benchmarks (NPB) (#3762) 2017-04-07 14:10:29 -05:00
Matthew Scott Krafczyk
7c4ed0a70a Add the rockstar package (#3680)
* Add the rockstar package

* Add rockstar to yt.

* Correct signature of prep_yt.

* Correct rockstar package installation process

Needed to change the way the necessary prefixes are found as well as
how the completed package is copied.

There should probably be a way to do the copying in a more 'spack' way.

* Add license

* Add description.

* Set no hdf5 variant as default.

* Use copy_tree for copying files

* Use MakefilePackage

* Address concerns from @adamjstewart

* Fix flake8 errors.
2017-04-07 13:17:19 -05:00
Jean-Paul Pelteret
c6777ddf74 Update LLVM to version 4.0.0 (#3683)
* Update LLVM to version 4.0.0

* Add arguments to prevent lldb, polly building when using ~<variant>
2017-04-07 13:15:14 -05:00
健美猫
3ad6754c1a Add the 'shared' variant for protobuf. (#3703) 2017-04-07 13:11:22 -05:00
Mark Olesen
f166f57f09 remove mxml CFLAGS option that was breaking configure (fixes #3700) (#3706)
- provide urls for versions 2.7, 2.6, 2.5 (archive copies)
2017-04-07 13:06:09 -05:00
Milton Woods
04f20320f4 subversion: spec.satisfies('^swig') does not work; replace spec.satisfies by "in spec" (#3662) 2017-04-07 13:03:57 -05:00
Axel Huebl
a8bd69f01c Package: ISAAC (#3733)
Adds the [ISAAC](https://github.com/ComputationalRadiationPhysics/isaac)
in situ volume rendering library. The ISAAC library can be build with
render/filter kernels for Nvidia GPUs via CUDA or with a more general
backend via [Alpaka](https://github.com/ComputationalRadiationPhysics/alpaka)
with support for Nvidia GPUs (via CUDA) and multicore CPUs.

Since alpaka is not yet part of spack, the second variant is still
commented out.

Packages

- `isaac`: header-only library with dependencies to other C++ libraries
           that is then used in simulations
- `isaac-server`: stand-alone executable that connects N simulations with M
                  clients in a `N simulations:1 server` and
                  `1 server:M clients` fashion

(ISAAC clients simply speak websockets/JSON and are usually
[HTML/JS pages](https://github.com/ComputationalRadiationPhysics/isaac/tree/v1.2.0/client))

Downstream Usage

PIConGPU uses ISAAC for in situ visualization.

References

- [Repo](https://github.com/ComputationalRadiationPhysics/isaac) (LGPLv3+)
- [Documentation](http://computationalradiationphysics.github.io/isaac/)
- [Talk at GTC2016](http://on-demand.gputechconf.com/gtc/2016/video/S6294.html)
2017-04-07 11:04:45 -05:00
Axel Huebl
7b37620e25 mallocMC: Spack Package (#3745)
Adds a package for mallocMC, a memory allocator for many core
architectures.

This project provides a framework for fast memory managers on
many core accelerators. Currently, it supports NVIDIA GPUs of
compute capability sm_20 or higher through the ScatterAlloc
algorithm. mallocMC is header-only.

Downstream Dependencies

PIConGPU and other projects of HZDR's
*Computational Radiation Physics* group

References

- Markus Steinberger, Michael Kenzel, Bernhard Kainz and Dieter Schmalstieg.
  *ScatterAlloc: Massively parallel dynamic memory allocation for the GPU*,
  Innovative Parallel Computing (InPar), 2012,
  https://doi.org/10.1109/InPar.2012.6339604

- Carlchristian Eckert.
  *Enhancements of the massively parallel memory allocator ScatterAlloc and its adaption to the general interface mallocMC*,
  Junior Thesis (grosser Beleg), 2014,
  http://dx.doi.org/10.5281/zenodo.34461
2017-04-07 11:03:58 -05:00
Adam J. Stewart
54d0f9157d Tell libedit to link to -lncursesw (#3752) 2017-04-07 11:03:19 -05:00
Christoph Junghans
f1943589b5 gromacs: added 5.1.4 and 2016.3 (#3758) 2017-04-07 10:59:14 -05:00
Adam J. Stewart
16fb872f84 Fix ncurses support in bash package (#3735) 2017-04-07 08:43:13 -05:00
healther
1d21a11ff4 fix dependencies of py-pynn (#3756) 2017-04-07 06:46:46 -05:00
Massimiliano Culpo
10c395b2f5 Abinit: a few modernizations for the package and its dependencies (#3699)
* libxc: added libs interface

* hdf5: added libs interface, added conflicts

* abinit: modernized package to use build interface

* netcdf-fortran: added libs interface

* abinit: added version 8.2.2
2017-04-07 11:18:34 +02:00
Axel Huebl
030127a071 cuda_memtest: Package of CRP (#3747)
This adds a maintained version of the (since 2012)
stalled original project.

https://github.com/ComputationalRadiationPhysics/cuda_memtest

Nvidia's NVML (via the GPU deployment kit) could also be
added, providing serial number output of failing GPUs
for multi-GPU nodes.
2017-04-06 22:05:13 -05:00
Christoph Junghans
e3bfb79824 Add Votca packages (#3748)
* A new package: votca-tools

* A new package: votca-csg
2017-04-06 22:04:51 -05:00
Todd Gamblin
279d410758 Add package for OpenSSH (#3750) 2017-04-06 21:37:49 -05:00
Christoph Junghans
10ceed3b66 A new package: legion (#3738) 2017-04-06 17:55:09 -05:00
George Hartzell
3232c16d0c Update version info to include v1.5.5 (#3743)
* Update version info to include v1.5.5

* Clean up url specifications.
2017-04-06 17:54:36 -05:00
Adam J. Stewart
7c41d9c6db spglib requires setuptools during runtime (#3744) 2017-04-06 17:54:07 -05:00
Denis Davydov
5c0fe2829b deal.ii: add 8.5.0 (#3741) 2017-04-06 16:29:40 -05:00
George Hartzell
84208523f9 set_executable can set S_IX{GRP,OTH} (#3742)
`set_executable` now checks if a user/group.other had read permission
on a file and if it does then it sets the corresponding executable
bit.

See #1483.
2017-04-06 16:25:13 -05:00
Max Katz
a526bcaf11 Correct uninstall -d to uninstall -R in tutorial (#3740)
-d was changed to -R as of PR #1917
2017-04-06 15:44:43 -05:00
Axel Huebl
f31a38532f libSplash & PNGwriter: CMakePackage (#3739)
Use new CMakePackage base class
2017-04-06 21:33:19 +02:00
Michael Kuhn
95e401fe80 Fix wx (#3734)
It is missing a pkg-config dependency.
2017-04-06 13:54:57 -05:00
Axel Huebl
951f4bf514 PNGwriter: 0.6.0 (#3732)
Adds the latest release of PNGwriter.
2017-04-06 12:31:55 -05:00
Todd Gamblin
eb9cb2d4a1 Fix libdwarf/elfutils conflict 2017-04-06 09:42:46 -07:00
健美猫
85f937525d A new package: xqilla. (#3731) 2017-04-06 10:54:16 -05:00
Jimmy Tang
00fb0dd6c6 Openmpi cuda support (#3725)
* Update cuda to latest ga2 release

* Add CUDA support to openmpi

* Use spec's lib directories for cuda

* flake8 compliance
2017-04-06 16:12:54 +02:00
Michael Kuhn
b81a50b4e3 Add zip package (#3715) 2017-04-06 08:12:51 -05:00
Michael Kuhn
095f57409c Fix magics (#3721)
- magics requires perl and perl-xml-parser.
- xml2cc_new.pl uses /usr/bin/perl by default.
2017-04-06 08:11:32 -05:00
Todd Gamblin
715ac8b7e6 Update copyright on the docs. (#3718) 2017-04-05 18:34:17 -07:00
Adam J. Stewart
df150b3e92 spack create MakefilePackage (#3710)
* spack create MakefilePackage

* Change default Perl template to match other build systems
2017-04-05 18:00:42 -05:00
Josh Asplund
048b6fc454 Fixes patch paths for earlier boost versions (#3712)
* Fixes patch paths for earlier boost versions

The directory structure of boost changed at version 1.56.0, so the patch
being used for python support did not work on earlier versions. This
adds another patch that matches earlier versions.

* Removes commented out code
2017-04-05 16:26:22 -05:00
Adam J. Stewart
745e2ce52f Fixes needed to build htop (#3691)
* Fixes needed to build htop

* Build libncursesw.so, not libncurses.so

* Remove htop hack now that it is picking up newer ncurses

* Tell packages to link to new ncursesw libraries
2017-04-05 16:03:11 -05:00