Amjad Kotobi
417eb3c5b1
git: added v2.27.0 ( #16918 )
2020-06-03 11:24:08 +02:00
Justin S
5604c8d91a
mummer4: new package at 4.0.0-beta2 ( #16907 )
2020-06-02 22:09:39 -05:00
Robert Blake
0e71e8716a
Add new package: sbml ( #16898 )
...
* Adding a module for sbml.
* Adding support for all the languages.
* Update var/spack/repos/builtin/packages/sbml/package.py
Co-authored-by: Greg Becker <becker33@llnl.gov>
* Update var/spack/repos/builtin/packages/sbml/package.py
Co-authored-by: Greg Becker <becker33@llnl.gov>
Co-authored-by: Robert Blake <rob.c.blake.3@gmail.com>
Co-authored-by: Greg Becker <becker33@llnl.gov>
2020-06-02 17:54:50 -07:00
Adam J. Stewart
7f086af05e
Ruby: add warning about Avira antivirus ( #16882 )
2020-06-02 15:05:50 -07:00
Massimiliano Culpo
d5ffec1b2f
Unify tests for compiler command in the same file ( #16891 )
...
* Unify tests for compiler command in the same file
Tests for the "spack compiler" command were previously
scattered among different files.
* Tests should use mutable_config, since they modify the compiler list
2020-06-02 14:59:42 -07:00
Toyohisa Kameyama
76142124d2
alsa-lib: Add new version and python dependency. ( #16905 )
...
Add version 1.2.2.
Add conditional python dependency.
Add patch for 1.1.4.1 and python.
2020-06-02 14:23:14 -07:00
Justin S
5d37439a7b
gmap-gsnap: add 2020-06-01 ( #16906 )
2020-06-02 14:21:00 -07:00
Chuck Atkins
5ace804dc2
Bump ADIOS to 2.6.0 ( #16908 )
2020-06-02 14:15:23 -07:00
iarspider
9a17d48455
Add ipython 7.5.0 ( #16801 )
...
* Add ipython 7.5.0
* Update dependencies
* Update package.py
2020-06-02 15:09:35 -05:00
takanori-ihara
b60ab6eefd
ruby: fixed build with Fujitsu compilers ( #16889 )
2020-06-02 11:07:48 +02:00
Xavier Delaruelle
c7851f896c
environment-modules: added v4.5.1 ( #16896 )
2020-06-02 11:06:02 +02:00
Greg Becker
2795414a80
Fix satisfaction checks for excluding variants from matrices ( #16893 )
...
Because of the way abstract variants are implemented, the following
spec matrix does not work as intended:
```
matrix:
- [foo]
- [bar=a, bar=b]
exclude:
- bar=a
```
because abstract variants always satisfy any variant of the same
name, regardless of values.
This PR converts abstract variants to whatever their appropriate
type is before running satisfaction checks for the excludes clause
in a matrix.
fixes #16841
2020-06-02 11:02:28 +02:00
takanori-ihara
0875c6a5d0
py-grpcio: fixed build with Fujitsu compilers ( #16900 )
2020-06-02 10:55:55 +02:00
Axel Huebl
6aa0e9944e
ccache: added v3.7.9 ( #16902 )
...
Add the latest CCache release. Fixes issues with `-x cu` that are
not present in the last checksummed release. This fixes workflows
with CMake.
2020-06-02 10:53:12 +02:00
Sinan
7f2db5c5b0
qt: add conflict for old gcc ( #16904 )
...
Co-authored-by: Sinan81 <Sinan81@github>
2020-06-02 10:51:35 +02:00
Michael Kuhn
6035b32748
go: added v1.14.4 and v1.13.12 ( #16903 )
2020-06-02 10:48:35 +02:00
Jonathon Anderson
feda2a3073
openmpi: add opa-psm2 dependency ( #16873 )
...
Also document with_or_without and enable_or_disable, (which are used
to configure the opa-psm2 dependency).
2020-06-01 15:33:24 -07:00
Amjad Kotobi
ab6905d5fa
r-exactextractr: package type fixed ( #16881 )
...
* r-exactextractr: should inherit from RPackage
* r-exactextractr: fixed URL
2020-06-01 14:01:41 -07:00
Massimiliano Culpo
2a4ca34a61
Recognize system installed gcc-10 as compilers ( #16884 )
...
Now that the version number of GCC reached double digits, an update
to the regex is needed to recognize gcc-10 as an executable to be
inspected when searching for compilers.
2020-06-01 13:59:14 -07:00
t-karatsu
9741de504f
netcdf-cxx4: Add 'doxygen' dependency.
2020-06-01 13:56:07 -07:00
Jianwen WEI
4387975556
miniforge3: add version 4.8.3-4.
2020-06-01 13:54:53 -07:00
mic84
fe74c22184
amrex: add version 20.06 ( #16895 )
2020-06-01 13:53:49 -07:00
Christoph Junghans
daea1fcef6
exampm: fix build ( #16894 )
...
* cabana: add mpi variant
* cajita: initial import
* exampm: update deps
* flake8
2020-06-01 13:58:09 -06:00
健美猞猁
de63e1c2ac
healpix-cxx: added new package at v3.50.0 ( #16846 )
2020-06-01 06:13:35 +02:00
Greg Becker
b1bd777403
petsc: fix conditional activation of parmetis ( #16533 )
2020-05-31 14:13:10 -05:00
Hector Martinez-Seara
23a5f3f200
Updated unison to v2.51.2 ( #16772 )
...
The current package does not work. Also several ocaml versions do
not compile such as 4.09.0. Updated to the new ocaml version to
4.10.0, which is now a prerequisite.
2020-05-31 13:58:37 -05:00
iarspider
6282e337f3
Add new version of py-astroid ( #16805 )
...
* Add new version of py-astroid
* Add new version of py-lazy-object-proxy
* Apply suggestions from code review
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Apply suggestions from code review
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-31 13:54:33 -05:00
健美猞猁
3896a401db
Install libsharp header files to include/libsharp. ( #16847 )
...
* Install libsharp header files to include/libsharp.
* Fix flake8 issues.
* Simplify specification of install path.
2020-05-30 23:09:27 -05:00
Jordan Ogas
66b8b5ab37
add charliecloud 0.16 ( #16810 )
...
* add charliecloud/0.16
* tidy comments
2020-05-30 22:10:50 -05:00
darmac
2fdb6b5e44
Add new package: canal ( #16790 )
2020-05-30 21:45:59 -05:00
takanori-ihara
e2fa74c533
Add new package:linsys-v ( #16823 )
2020-05-30 21:20:08 -05:00
Satish Balay
1ec8d928fa
petsc@3.13: update superlu-dist dependency - as superlu-dist@6.3.1 has API change ( #16849 )
2020-05-30 21:10:34 -05:00
Erik Schnetter
b00080d2da
ssht: Install include files into "include/ssht" ( #16879 )
2020-05-30 21:08:18 -05:00
Adam J. Stewart
9eebc6b4c1
horovod: added v0.19.4 ( #16878 )
2020-05-30 20:22:00 +02:00
Adam J. Stewart
d76eb1fa51
Pandas: add 1.0.4 ( #16877 )
2020-05-30 11:09:10 -05:00
noguchi-k
816f780be8
revocap-refiner: add space and remove unused function. ( #16861 )
2020-05-30 10:57:12 -05:00
darmac
7a363e2a3f
Add new package: netkit-ftp ( #16876 )
...
* Add new package: netkit-ftp
* remove parallel constraint
2020-05-30 10:47:47 -05:00
Jen Herting
3a66d0773c
perl-bioperl: fixed version 1.007002 ( #16826 )
...
* [perl-bioperl] fixed url for version 1.007002
* [perl-bioperl] fixed conditional method directives
2020-05-30 00:17:01 -07:00
Amjad Kotobi
857d2c9150
r-lfe: New package
2020-05-30 00:15:50 -07:00
Michael Kuhn
3cc0e1a333
cpio: add patch to fix build with gcc@10: ( #16844 )
2020-05-30 00:14:57 -07:00
Amjad Kotobi
58cc75ac29
git-lfs: add versions 2.10.0, 2.11.0 ( #16850 )
2020-05-30 00:14:24 -07:00
Ben Morgan
c35ced1465
geant4: New version 10.6.2 ( #16868 )
...
Update both main and data packages. Data versions have not changed
in new version.
Provide new python variant to build Python bindings for 10.6.2 and
newer. Add dependencies on python and Boost+python required by variant.
2020-05-30 00:13:24 -07:00
Sergey Kosukhin
9d1f71e89f
repo: fix construction of UnknownPackageError ( #16865 )
...
Also improve the error messages
2020-05-29 20:07:44 +02:00
Nicholas Sly
ec5959694c
Add netcdf-c~parallel-netcdf variant specification to netcdf-fortran~mpi. ( #16671 )
...
Co-authored-by: sly <sly@lanl.gov>
2020-05-29 09:48:03 -07:00
Christoph Junghans
11fc6c5791
examinimd/miniaero: fix build with kokkos-legacy ( #16867 )
...
* examinimd/miniaero: fix build with kokkos-legacy
* flake8
2020-05-29 10:17:55 -06:00
Robert Rosca
edd075a5e1
Mention that packages can be uninstalled by hash ( #16863 )
2020-05-29 13:23:02 +02:00
Greg Becker
bd95b7df86
spack module_cmd: set LD_LIBRARY_PATH for python in subshell. ( #16827 )
...
* Ensure python runs with proper ld_library_path within Spack regardless of environment
2020-05-29 11:57:21 +02:00
Jane Herriman
6af3272e1d
Update error message when UnavailableCompilerVersionError is triggered ( #16838 )
...
Co-authored-by: Herriman <herriman1@panorama.llnl.gov>
2020-05-29 10:53:43 +02:00
Greg Becker
a21fab6fe4
compilers: add opt_flags and debug_flags properties ( #16710 )
2020-05-29 10:52:31 +02:00
0t1s1
2aca0cf565
gridlab-d: added new package. ( #16816 )
2020-05-29 09:37:12 +02:00
