iarspider
5d3efbba14
Fix recipe for py-onnx-runtime ( #34130 )
...
* Fix recipe
* Update package.py
* Update recipe following review
* Update var/spack/repos/builtin/packages/py-onnx-runtime/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* remove unused imports
* Update package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-11-30 09:17:22 -06:00
Sajid Ali
7423f52cd3
PMIx: enable python bindings ( #34107 )
2022-11-30 15:55:24 +01:00
Massimiliano Culpo
43d93f7773
Deduplicate code to propagate module changes across MRO ( #34157 )
2022-11-30 11:10:42 +01:00
Harmen Stoppels
f8dec3e87f
Single pass text replacement ( #34180 )
2022-11-30 10:21:51 +01:00
Manuela Kuhn
ef06b9db5b
py-bidscoin, py-multiecho: add new packages ( #34168 )
2022-11-29 17:37:50 -07:00
Todd Gamblin
c64c9649be
debug: move "nonexistent config path" message to much higher verbosity level ( #34201 )
...
We currently report that searched config paths don't exist at debug level 1, which
clutters the output quite a bit:
```console
> spack -d solve --fresh --show asp hdf5 > hdf5.lp
==> [2022-11-29-14:18:21.035133] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/darwin/concretizer.yaml
==> [2022-11-29-14:18:21.035151] Skipping nonexistent config path /Users/gamblin2/.spack/concretizer.yaml
==> [2022-11-29-14:18:21.035169] Skipping nonexistent config path /Users/gamblin2/.spack/darwin/concretizer.yaml
==> [2022-11-29-14:18:21.035238] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/repos.yaml
==> [2022-11-29-14:18:21.035996] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/defaults/darwin/repos.yaml
==> [2022-11-29-14:18:21.036021] Skipping nonexistent config path /etc/spack/repos.yaml
==> [2022-11-29-14:18:21.036039] Skipping nonexistent config path /etc/spack/darwin/repos.yaml
==> [2022-11-29-14:18:21.036057] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/repos.yaml
==> [2022-11-29-14:18:21.036072] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/darwin/repos.yaml
==> [2022-11-29-14:18:21.036088] Skipping nonexistent config path /Users/gamblin2/.spack/repos.yaml
==> [2022-11-29-14:18:21.036105] Skipping nonexistent config path /Users/gamblin2/.spack/darwin/repos.yaml
==> [2022-11-29-14:18:21.071828] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/config.yaml
==> [2022-11-29-14:18:21.081628] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/defaults/darwin/config.yaml
==> [2022-11-29-14:18:21.081669] Skipping nonexistent config path /etc/spack/config.yaml
==> [2022-11-29-14:18:21.081692] Skipping nonexistent config path /etc/spack/darwin/config.yaml
==> [2022-11-29-14:18:21.081712] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/config.yaml
==> [2022-11-29-14:18:21.081731] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/darwin/config.yaml
==> [2022-11-29-14:18:21.081748] Skipping nonexistent config path /Users/gamblin2/.spack/config.yaml
==> [2022-11-29-14:18:21.081764] Skipping nonexistent config path /Users/gamblin2/.spack/darwin/config.yaml
==> [2022-11-29-14:18:21.134909] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/packages.yaml
==> [2022-11-29-14:18:21.148695] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/darwin/packages.yaml
==> [2022-11-29-14:18:21.152555] Skipping nonexistent config path /etc/spack/packages.yaml
==> [2022-11-29-14:18:21.152582] Skipping nonexistent config path /etc/spack/darwin/packages.yaml
==> [2022-11-29-14:18:21.152601] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/packages.yaml
==> [2022-11-29-14:18:21.152620] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/darwin/packages.yaml
==> [2022-11-29-14:18:21.152637] Skipping nonexistent config path /Users/gamblin2/.spack/packages.yaml
==> [2022-11-29-14:18:21.152654] Skipping nonexistent config path /Users/gamblin2/.spack/darwin/packages.yaml
==> [2022-11-29-14:18:21.853915] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/defaults/compilers.yaml
==> [2022-11-29-14:18:21.853962] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/defaults/darwin/compilers.yaml
==> [2022-11-29-14:18:21.853987] Skipping nonexistent config path /etc/spack/compilers.yaml
==> [2022-11-29-14:18:21.854007] Skipping nonexistent config path /etc/spack/darwin/compilers.yaml
==> [2022-11-29-14:18:21.854025] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/compilers.yaml
==> [2022-11-29-14:18:21.854043] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/darwin/compilers.yaml
==> [2022-11-29-14:18:21.854060] Skipping nonexistent config path /Users/gamblin2/.spack/compilers.yaml
==> [2022-11-29-14:18:21.854093] Reading config from file /Users/gamblin2/.spack/darwin/compilers.yaml
```
It is very rare that I want to know this much information about config search, so I've
moved this to level 3. Now at level 1, we can see much more clearly what configs were
actually found:
```console
> spack -d solve --fresh --show asp hdf5 > hdf5.lp
==> [2022-11-29-14:19:04.035457] Imported solve from built-in commands
==> [2022-11-29-14:19:04.035818] Imported solve from built-in commands
==> [2022-11-29-14:19:04.037626] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/concretizer.yaml
==> [2022-11-29-14:19:04.040033] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/repos.yaml
==> [2022-11-29-14:19:04.080852] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/config.yaml
==> [2022-11-29-14:19:04.133241] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/packages.yaml
==> [2022-11-29-14:19:04.147175] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/darwin/packages.yaml
==> [2022-11-29-14:19:05.157896] Reading config from file /Users/gamblin2/.spack/darwin/compilers.yaml
```
You can still get the old messages with `spack -ddd` (to activate debug level 3).
2022-11-29 16:17:13 -08:00
Paul R. C. Kent
2c6b52f137
add 15.0.5, 15.0.6 ( #34194 )
2022-11-29 15:26:13 -08:00
kwryankrattiger
33422acef0
CI: Update Data and Vis SDK Stack ( #34009 )
...
* CI: Update Data and Vis SDK Stack
* Update image to match target deployments (E4S)
* Enable all packages
* Test supported variants of ParaView and VisIt
* Sensei: Update Python hint for newer cmake
* Sensei: add Python3 hint
2022-11-29 14:49:55 -07:00
Stephen Sachs
428f635142
icc@2021.6.0 does not support gcc@12 headers ( #34191 )
...
Error message:
```
/shared/spack/opt/spack/linux-amzn2-x86_64_v3/gcc-7.3.1/gcc-12.2.0-4tairupdxg2tg2yhvjdlbs7xbd7wudl3/bin/../include/c++/12.2.0/bits/random.h(104): error: expected a declaration
{ extension using type = unsigned __int128; };
^
```
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-11-29 14:36:48 -05:00
kwryankrattiger
c6c74e98ff
Dav sdk catalyst ( #34010 )
...
* SDK: Add Catalyst 1 and 2 support to the SDK
* LibCatalyst: Remove unused python3 variant from package
2022-11-29 11:28:32 -06:00
Valentin Volkl
d9b438ec76
evtgen: add v02.02.00 ( #34187 )
...
* evtgen: add v02.02.00
* format
2022-11-29 09:54:14 -07:00
Cristian Le
c6ee30497c
Fix libxc cflag ( #34000 )
...
Using standard c99 should not be specific to intel compilers.
2022-11-29 13:45:28 +01:00
Loïc Pottier
1270ae1526
hiredis: updated package definition to use CMake ( #33949 )
2022-11-29 13:44:50 +01:00
psakievich
d15fead30c
Add maintainer to Exawind stack and Trilinos ( #34174 )
...
* Add maintainer to Nalu-Wind and Trilinos
* Add to trilinos
* Exawind too
* amr-wind too
2022-11-28 17:23:17 -08:00
Valentin Volkl
23aaaf2d28
genfit: add v02-00-01 ( #34159 )
2022-11-28 17:09:47 -08:00
Hans Fangohr
56f9c76394
fix typo in path for sanity check ( #34117 )
...
- typo breaks install
2022-11-28 16:49:57 -07:00
Sam Grayson
49cda811fc
Add new version of snakemake ( #34041 )
...
* Add new version of snakemake
* Add myself as a maintainer
* py-retry -> py-reretry
* Added snakemake variants for storage systems
* Updated comments
* Responded to Adam's comments
* Fixed spack style
* Add build/run dependency types
2022-11-28 15:10:10 -07:00
Benjamin Meyers
a97312535a
New package: py-statmorph ( #34158 )
...
* New package py-statmorph w/ dependecies. Add py-astropy@5.1
* [@spackbot] updating style on behalf of meyersbs
* [py-statmorph,py-astropy,py-pyerfa] minor fixes
2022-11-28 15:46:10 -06:00
Benjamin Meyers
a0180ef741
New package: py-stui ( #34156 )
...
* New package py-stui
* [py-stui] add maintainer
* [@spackbot] updating style on behalf of meyersbs
* [py-stui] fix deps
2022-11-28 15:45:40 -06:00
iarspider
d640a573a8
Add checksum for py-rsa 4.9 ( #34115 )
...
* Add checksum for py-rsa 4.9
* Update package.py
* Update var/spack/repos/builtin/packages/py-rsa/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-11-28 14:10:21 -07:00
Cameron Smith
b3679406d0
omegah: new scorec version, fix cuda flags ( #34169 )
2022-11-28 13:03:27 -08:00
eugeneswalker
587488882a
e4s ci: add hdf5-vol-async; remove expired comments ( #34110 )
2022-11-28 19:35:42 +00:00
Satish Balay
a17844a367
petsc, py-petsc4py: add 3.18.2 ( #34161 )
2022-11-28 10:51:48 -08:00
Manuela Kuhn
093a37750c
py-bidskit: new package and dcm2niix: add 1.0.20220720 ( #34162 )
...
* py-bidskit: new package and dcm2niix: add 1.0.20220720
* Remove list_url
2022-11-28 11:05:49 -07:00
iarspider
173cc7e973
Add checksum for py-traitlets 5.3.0 ( #34127 )
2022-11-28 11:05:35 -07:00
Greg Becker
451e3ff50b
warn about removal of deprecated format strings ( #34101 )
...
* warn about removal of deprecated format strings
Co-authored-by: becker33 <becker33@users.noreply.github.com>
2022-11-28 10:03:49 -08:00
Manuela Kuhn
523c4c2b63
py-dcm2bids: add new package ( #34163 )
2022-11-28 10:46:04 -07:00
Thomas-Ulrich
35e5a916bc
easi: update package, rework impalajit ( #34032 )
2022-11-28 15:54:21 +01:00
Annop Wongwathanarat
1374577659
acfl: provides blas, lapack, and fftw-api@3 ( #34154 )
2022-11-28 14:25:32 +01:00
Hector Martinez-Seara
4c017403db
texinfo: add v7.0 ( #34150 )
2022-11-28 06:22:13 -07:00
Massimiliano Culpo
fdfda72371
Use a module-like object to propagate changes in the MRO, when setting build env ( #34059 )
...
This fixes an issue introduced in #32340 , which changed the semantics of the "module"
object passed to the "setup_dependent_package" callback.
2022-11-28 14:18:26 +01:00
Harmen Stoppels
efa1dba9e4
Revert "Revert "gitlab: Add shared PR mirror to places pipelines look for binaries. ( #33746 )" ( #34087 )" ( #34153 )
...
This reverts commit 63e4406514
2022-11-28 06:06:03 -07:00
Annop Wongwathanarat
2a7ae2a700
armpl-gcc: add post-installation check by running examples ( #34086 )
2022-11-28 13:55:51 +01:00
Adam J. Stewart
a1b4e1bccd
Add type hints to Prefix class ( #34135 )
2022-11-28 13:49:57 +01:00
Alec Scott
066ec31604
Add restic v0.14.0 ( #34148 )
2022-11-28 08:39:37 +01:00
Alec Scott
bb1888dbd4
direnv: add v2.32.2 ( #34147 )
2022-11-27 22:09:53 +01:00
Michael Kuhn
bc17b6cefb
rust: add 1.65.0 ( #34124 )
2022-11-27 16:03:46 +01:00
Umashankar Sivakumar
46a0cd8e55
SingularityCE: Add conmon+squashfs as dependencies ( #33891 )
2022-11-27 13:05:49 +01:00
fpruvost
b2ceb23165
pastix: add new version 6.2.2 ( #34066 )
2022-11-27 00:33:05 +01:00
Harmen Stoppels
2fad966139
neovim: fix deptypes ( #34060 )
2022-11-27 00:23:24 +01:00
Luke Diorio-Toth
0b01c8c950
py-fastpath: new package ( #34142 )
...
* py-fastpath: new package
* Update var/spack/repos/builtin/packages/py-fastpath/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-11-26 15:57:45 -07:00
Eric Berquist
613d0b7e8e
emacs: add variant treesitter for Emacs 29+ ( #34134 )
2022-11-26 23:45:00 +01:00
Wouter Deconinck
21c29ee375
prmon: Add missing depends_on py-numpy, py-pandas when +plot ( #34123 )
2022-11-26 23:43:25 +01:00
Luke Diorio-Toth
e236339e5a
aragorn: add newer versions and URL ( #34140 )
2022-11-26 23:34:59 +01:00
Luke Diorio-Toth
7a03525c35
minced: add v0.4.2 ( #34141 )
2022-11-26 23:30:56 +01:00
Hans Fangohr
17ca86a309
Octopus: branch for Octopus development is now "main" ( #34128 )
...
Historically, development of the Octopus code was done on the "develop" branch
on https://gitlab.com/octopus-code/octopus but now development takes place on
"main" (since Q3 2022).
The suggestion in this PR to solve the issue is to keep the spack label
`octopus@develop` as this better indicates this is the development branch on git
than `octopus@main`, but of course to use the `main` branch (there is no choice
here - the `develop` branch is not touched anymore). Sticking to
`octopus@develop` as the version label also keeps backwards compatibility.
2022-11-26 15:29:49 -07:00
marcost2
ce71a38703
nvtop: Add 2.0.3, 2.0.4, 3.0.0 and 3.0.1 ( #34145 )
...
* And add the option to compile support for Intel GPU's
2022-11-26 21:04:48 +01:00
Satish Balay
12c23f2724
Revert "url_exists related improvements ( #34095 )" ( #34144 )
...
This reverts commit d06fd26c9a
2022-11-26 17:56:36 +00:00
Carlos Bederián
b8ae0fbbf4
amdblis: symlink libblis-mt to libblis ( #32819 )
2022-11-26 00:33:29 +01:00
Sebastian Ehlert
6b5c86e0be
toml-f: add 0.2.4 and 0.3.1 ( #34025 )
2022-11-25 16:29:58 -07:00
