Commit graph

11198 commits

Author SHA1 Message Date
Adam J. Stewart
c03d4688e4
PyTorch: fix master and mkldnn builds (#16560) 2020-05-10 19:40:00 -05:00
Amjad Kotobi
7d3b40fba4
new version r-rcpp (#16549) 2020-05-10 17:39:20 -05:00
Amjad Kotobi
6c820dd6b5
new version r-glue (#16558) 2020-05-10 17:38:51 -05:00
Amjad Kotobi
36941e3d94
new version r-pkgbuild (#16559) 2020-05-10 17:38:38 -05:00
Amjad Kotobi
5dc51c21bb
new version r-jsonlite (#16557) 2020-05-10 17:38:26 -05:00
Amjad Kotobi
f32d561e9b
new version r-dt (#16555) 2020-05-10 15:31:58 -05:00
Amjad Kotobi
3210e5999e
new version r-covr (#16554) 2020-05-10 15:31:08 -05:00
Amjad Kotobi
ff869a7d68
new version r-callr (#16552) 2020-05-10 15:29:18 -05:00
Adam J. Stewart
358242d2a8
DGL: add new version (#16547) 2020-05-10 10:04:28 -05:00
vvolkl
69ea6de069
[dd4hep] variant and run env updates (#16524)
* [dd4hep] variant and run env updates

* address comments from #16524
2020-05-09 14:54:07 -05:00
Larry Knox
6e46603470
Add maintainers and variants for building with default earlier api versions. (#16534)
* Add maintainers.
Add variants for building with default earlier api versions.

* Update var/spack/repos/builtin/packages/hdf5/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-09 13:05:55 -05:00
Jen Herting
54fee4b400
New package: py-addict (#16535)
* [py-addict] created template

* [py-addict] added homepage and description

* [py-addict] cleaned up fixmes

* [py-addict] depends on py-setuptools
2020-05-09 13:05:33 -05:00
Nichols A. Romero
a868b1c756
QMCPACK Update May 2020 (#16542)
* Add naromero77 as a maintainer for QMCPACK Spack package.

* Add QMCPACK 3.9.2

* Remove QE-to-QMCPACK wave function converter from QMCPACK Spack package. Already been moved to QE Spack package.
2020-05-09 13:05:11 -05:00
iarspider
b668bde7ec
Fix dependency of geant4 (amends #16497) (#16504)
* Fix dependency of geant4 (amends #16497)

* Update geant4-data dependencies

* Reviewer comments (part 1/2)

* Reviewer comments (part 2/2)

* Update var/spack/repos/builtin/packages/geant4-data/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-09 19:04:20 +01:00
Cyrus Harrison
8671ac6a1a
update visit package with 3.1.1 release and add comments (#16498) 2020-05-09 10:28:33 -07:00
Adam J. Stewart
790e9ac6de
spaCy: add new package for en_core_web_sm model (#16539) 2020-05-08 22:20:38 -05:00
Keita Iwabuchi
4c42946201
Metall: add version 0.2 (#16502) 2020-05-08 12:31:20 -05:00
takanori-ihara
89c92a0206
Add new package:py-pytest-check-links (#16503) 2020-05-08 12:30:47 -05:00
Sergey Kosukhin
e1c49d11bf
py-netcdf4: a couple of improvements (#16505)
* py-netcdf4: avoid recompilation and make the older versions to work with HDF5@1.10:

* py-netcdf4: add a new version and introduce a maintainer list.
2020-05-08 12:27:28 -05:00
Frédéric Simonis
1e9313a191
precice: Fix conflict with boost 1.73.0 (#16507) 2020-05-08 12:26:37 -05:00
Christoph Junghans
b9415c6b53
graphviz: fix cairo backend (#16511) 2020-05-08 12:25:38 -05:00
iarspider
08528a7379
Gaudi: separate variant for building documentation (#16515)
* Gaudi: separate variant for building documentation

* Update package.py
2020-05-08 12:24:42 -05:00
h-denpo
fae55550f9
New package (#16519)
Large Scale Assembly, Structural Correspondence,
       Multi Dynamics Simulator.In this program,
       a part of functions of ADVENTURE_Solid ver.1.1 module
2020-05-08 12:22:04 -05:00
iarspider
652e179ae6
Gaudi: syntax fix (#16523) 2020-05-08 12:17:48 -05:00
Amjad Kotobi
33e88db2d6
new version xrootd-4.12.0 (#16528) 2020-05-08 12:05:54 -05:00
Amjad Kotobi
9eaf7e42c8
new version r-git2r-0.27.1 (#16529) 2020-05-08 12:05:30 -05:00
Elizabeth Fischer
bff5708a4f
Revert changes to qt (#16516)
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
2020-05-07 18:32:44 -05:00
Adam J. Stewart
d7bd070ae9
GDAL: add 3.1.0 (#16509) 2020-05-07 14:41:38 -05:00
Themos Tsikas
3c3d431492
NAG Compiler 7.0 (Build 7017) download checksum (#16510) 2020-05-07 14:41:21 -05:00
Andrew Gaspar
0103084558
Add Rust 1.43.1 (#16512) 2020-05-07 14:38:21 -05:00
h-denpo
4b65efa8ae
ADD New package revocap-refiner (#16499)
* ADD New package revocap-refiner
    """The University of Tokyo, CISS Project:
        Geometric processing, mesh processing, mesh generation"""

* Modify     homepage = "https://github.com/FrontISTR/REVOCAP_Refiner"
Modify    version('master', branch='master')
Modify    depends_on('swig', type='build')
Modify        install_tree('Refiner', prefix.include.refine)
Delete         mkdirp(prefix.include)
2020-05-07 08:44:23 -05:00
darmac
762e74e1e3
Add new package: ganglia (#16382)
* Add new package: ganglia

* ganglia: fix the libexpat depends
2020-05-07 08:41:28 -05:00
Hadrien G
14685ae552
Adapt to the latest Acts developments (#16385)
* Adapt to the latest Acts developments

A long time ago, the Acts project (whose name was then capitalized ACTS) used
to maintain multiple software repositories:

- The heart of the tracking toolkit was located in the `acts-core` repository
- Fast simulation extensions were located in the `acts-fatras` repository
- Advanced usage examples were located in the `acts-framework` repository

This multi-repository organization, however, has been a source of constant
pain, which is why the various projects were gradually merged into a single
mono-repo, called `acts`. Today, with the integration of `acts-framework`,
this merging process is reaching completion.

The present pull request adapts the Acts package to this evolution by...

- Renaming the package to `acts`, reflecting the new repository name
- Renaming the `test` variant to `unit_tests`, reflecting current CMake naming
- Adding the new build variants that were inherited from `acts-framework`
- Acknowledging the change of semantics of the `examples` variant, and only
  supporting the new ones (as the former variant was almost unused)
- Liberally using alphabetical order to make the package code more readable
- Recording a large number of conflicts, some of which are introduced by the
  merging of `acts-framework` and some of which already existed before
- Using the new capitalization of "Acts"

* Add acts v0.23

* Update dd4hep version requirement

* Add acts v0.22.1 bugfix
2020-05-07 08:40:31 -05:00
asmaahassan90
edd60f95c3
Add PGI version 19.7 and export OMPI variables (#16484)
* add PGI version 19.7

* use openmpi in pgi

exporting openmpi enviroment variables when installed with pgi

* fix lint
2020-05-07 08:38:05 -05:00
Eisuke Kawashima
05dcfe829e
neovim: added v0.4.3 (#16410)
Use neovim's vendored dependencies for 0.4 and later
2020-05-07 10:29:27 +02:00
Tomoki, Karatsu
830f3f79d9
openfoam: correspond to build with Fujitsu compiler. (#15941)
* openfoam: correspond to build with Fujitsu compiler.

* openfoam: add rules for Fujitsu compiler (on linuxARM64)

- the Fujitsu compiler is a clang derivative, so use a modified
  version of the clang rules if upstream does not supply anything
2020-05-06 21:55:09 -05:00
takanori-ihara
50a2690ce1
Add new package:py-json5 (#16273)
* Add new package:py-json5

* Remove unnecessary line
2020-05-06 21:53:16 -05:00
iarspider
8845358f10
New version of pylint + fix dependencies (#16443)
* New version of pylint + fix dependencies

* Update package.py

* Update package.py
2020-05-06 21:51:04 -05:00
Glenn Johnson
9c218079f0
Install RMPISNOW wrapper in prefix.bin for r-snow (#16479)
If using mpirun, the R sessions can be started with a wrapper script
that helps set up the R session cluster. Put this wrapper in the PATH so
it is easily accessible.
2020-05-06 21:49:46 -05:00
Adam J. Stewart
18e1e2424f
py-shapely: fix unit tests (#16500) 2020-05-06 20:44:55 -05:00
Sergey Kosukhin
2139c8e53e
py-netcdf4: make sure we don't use system hdf5. (#16492) 2020-05-06 18:14:10 -05:00
Adam J. Stewart
b14befe61a
Bazel: add new versions (#16493) 2020-05-06 18:12:40 -05:00
Adam J. Stewart
d2709fd376
TensorFlow: add new version (#16494) 2020-05-06 18:12:28 -05:00
Kevin Manalo
e8753fe972
OpenMPI - Update to 3.1.6 (#16496) 2020-05-06 18:12:14 -05:00
iarspider
638784e4c3
Add new version of Geant4 (#16497) 2020-05-06 18:11:40 -05:00
Adam J. Stewart
74b3ae4803
PyTorch/Torchvision: fix deptype (#16495) 2020-05-06 18:05:26 -05:00
yellowhat
d1983d7395
blis: FIX threads option, HPL: enable opemp variant for 2.3 (#16476)
* blis: FIX threads option

* HPL: openmp variant is ignored for 2.3

* blis: FIX flake8

* blis: FIX spacing

* Update var/spack/repos/builtin/packages/hpl/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* hpl: FIX spec --> self.spec, FIX blas with amdblis

* HPL: fix flake8

* HPL: FIX flake8

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-06 15:36:29 -05:00
Elizabeth Fischer
1aacdc4e18
qscintilla (#16182)
* qscintilla

* Revert "qscintilla"

This reverts commit 00bd00ea3c5af4f29de5dd6961acf03fb51e2ea0.

* Move logic to qt package.

* flake8

Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
2020-05-06 15:35:36 -05:00
Scott Wittenburg
6d1e9c3ff4
margo: update dependency on argobots (#16489) 2020-05-06 12:17:28 -07:00
Peter Scheibel
b030a81a5f
Automatically find externals (#15158)
Add a `spack external find` command that tries to populate
`packages.yaml` with external packages from the user's `$PATH`. This
focuses on finding build dependencies. Currently, support has only been
added for `cmake`.

For a package to be discoverable with `spack external find`, it must define:
  * an `executables` class attribute containing a list of
    regular expressions that match executable names.
  * a `determine_spec_details(prefix, specs_in_prefix)` method

Spack will call `determine_spec_details()` once for each prefix where
executables are found, passing in the path to the prefix and the path to
all found executables. The package is responsible for invoking the
executables and figuring out what type of installation(s) are in the
prefix, and returning one or more specs (each with version, variants or
whatever else the user decides to include in the spec).

The found specs and prefixes will be added to the user's `packages.yaml`
file. Providing the `--not-buildable` option will mark all generated
entries in `packages.yaml` as `buildable: False`
2020-05-05 17:37:34 -07:00