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Author SHA1 Message Date
healther
bc379ab919 fix dependencies for matplotlib@2.2.2 (#7735) 2018-04-12 12:53:30 -05:00
Eric
41867cf007 perl-want: Create new package (#7734) 2018-04-12 12:24:28 -05:00
Geoffrey Oxberry
bbdf586d14 glu: new virtual package; openglu: new package (#7162) 
* mesa-glu: now provides 'glu' (GL Utility library)

* openglu: add package, provides glu

* openglu: add custom fetcher, remove nonsense url

Change openglu package to look like the opengl package in GitHub PR

* [OpenGLU] Fix a typo
 2018-04-12 07:16:16 -07:00
Geoffrey Oxberry
0e4e7d05e4 opengl: make error throw on install, not fetch (#7063) 
* opengl: make error throw on install, not fetch

* opengl: add configuration advice for darwin

* opengl: add more versions of GL/OpenGL

* opengl: improve documentation in comments

* [OpenGL] Fix formatting
 2018-04-12 07:14:38 -07:00
Massimiliano Culpo
fa07f95a71
Fixes conflicts in OSX nightly tests (#7732) 
fixes #7593

Unit tests on OSX are trying to concretize mpileaks, and they fail due
to a conflict in the package:

"%gcc@7.2.0:" conflicts with "elfutils@0.163"

This solves the issue asking explicitly to concretize against
elfutils@1.170
 2018-04-12 14:11:36 +02:00
healther
3608c4d3b5 add package py-gdbgui (#7715) 
* add package py-gdbgui

Change-Id: I553e1e4c4f6385348190817199e05b25522b57b4

* fix alignment

* add setuptool runtimedependency

* add gdb run dependency
 2018-04-11 21:30:23 -05:00
Massimiliano Culpo
1307ad3979
Package.provides account for v deps that are provided conditionally (#7716) 
fixes #7705

Package.provides now checks constraints to ensure that a spec provides
a given virtual package. Note that 'strict=True' is not passed to
satisfies as this function is also used during concretization.
 2018-04-11 21:50:03 +02:00
healther
3b44a2ff40 Add package py-slurm-pipeline (#7681) 
* add package py-slurm-pipeline

Change-Id: Iade405a7e96f04e476cea76e460cac2ebdf21f95

* add missing py-six dependency

Change-Id: I382fa4139880c1a61af3f314c74ed6e7c2e88c5b

* Update package.py

* Update package.py

* Update package.py

* fix flake8
 2018-04-11 14:25:08 -05:00
Simon Flood
ed5f68211e Add ANTs package (#7717) 
* Add ants package

Add a package for ANTs (version 2.2.0)

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* Update package.py
 2018-04-11 14:22:23 -05:00
healther
a23e319dac add package py-python-socketio (#7721) 
* add package py-python-socketio

* fix indention

* add description to eventlet variant

* fix dependencies

Change-Id: I425ae165dfcce30df6cbbd671cd6ef1bef5078dc

* Update package.py

* Update package.py

* Update package.py

* Update package.py
 2018-04-11 14:21:37 -05:00
peetsv
af13236d68 py-cnvkit: add new package (#7688) 
* py-cnvkit: add new package

* updating dependencies

* correcting flake8 error

* adding py-setuptools dependency
 2018-04-10 20:25:32 -05:00
healther
9ba7ecb1de add package py-gevent (#7712) 
* add package py-gevent

Change-Id: I49722e02a961f20b9177ae8575b78b42bf6c01c9

* fix alignment

* add cffi dependency
 2018-04-10 20:24:11 -05:00
healther
4eeec729ea add package py-eventlet (#7722) 2018-04-10 20:22:45 -05:00
healther
70754c5d21 add package py-greenlet (#7720) 
* add package py-greenlet

* remove optional setuptools dependency
 2018-04-10 20:22:28 -05:00
healther
6508a2c3d3 add package py-python-engineio (#7723) 
* add package py-python-engineio

* flake8 fix
 2018-04-10 20:21:57 -05:00
Christoph Junghans
45ddfe83ef lammps: add v20180316 (#7725) 
* lammps: add v20180316

* add latte@1.1.1 and make lammps use it
 2018-04-10 20:21:35 -05:00
Daniel Topa
dbb7f8e13a hwloc: add v 2.0.1 (#7724) 
Signed-off-by: Dan Topa <dantopa@lanl.gov>
 2018-04-10 20:20:09 -05:00
Michael Kuhn
e7760f1f59 go: Update to 1.10.1 (#7708) 
Also update go-bootstrap to the 20171003 snapshot.
 2018-04-10 14:41:52 -05:00
healther
8dac669a87 add package py-pygdbmi (#7711) 
* add package py-pygdbmi

Change-Id: I9850ccecebb1d46e983cda39c371caab23ad61e9

* add runtime setuptools dependency (from distutils import)

* remove unnecessary run dependency
 2018-04-10 14:35:26 -05:00
thecorkscrew
3bd74f1858 Added C-Lime Package (#7707) 
* Added C-Lime Package

* Small fix
 2018-04-10 12:05:05 -05:00
healther
f278f512cc add py-cython@0.28.1 (#7709) 
Change-Id: I7e3931f8224a367ce1657256b3100139abcc4f86
 2018-04-10 12:03:51 -05:00
healther
ab7e2a5c9e add py-flask@0.12.2 (#7710) 
Change-Id: I51887f661e6dd896a9f740b51f4e81bdf532f9b4
 2018-04-10 12:03:17 -05:00
healther
a59aef7c78 add package py-flask-compress (#7713) 
* add package py-flaks-compress

Change-Id: Ia67f292364f339907c7c0a5bd707a7a1e69877be

* fix alignment

* linebreak to make flake8 happy
 2018-04-10 11:58:35 -05:00
healther
431a3068b6 add package py-flask-socketio (#7714) 
* add package py-flask-socketio

Change-Id: Ib9bb41b9c3de06f07ffb47449edf02476827b610

* fix alignment

* add missing werkzeug dependency
 2018-04-10 11:57:06 -05:00
peetsv
f8765593e0 Perl file copy recursive 0.40 (#7718) 
* perl-file-copy-recursive: add newer version v0.40
 2018-04-10 11:48:02 -05:00
Adam J. Stewart
eac2defed5
Add latest versions of libxcb and xcb-proto (#7650) 2018-04-10 11:47:02 -05:00
Adam J. Stewart
69f94f18a3
Fix GCC 6/7 build on APFS (#7696) 2018-04-10 11:46:44 -05:00
lingnanyuan
ecc481a9a7 fermi: Create new package. (#7702) 
* fermi: Create new package.

* fermi: Add missing dependency.

* fermi: Change dependency type of perl to run.
 2018-04-10 08:52:21 -05:00
lingnanyuan
dc8c8311c6 wgsim: Create new package. (#7674) 
* wgsim: Create new package.

* fix flake8 error.

* wgsim: change cc compiler to spack_cc.

* add missing dependency.
 2018-04-09 14:23:11 -05:00
Sinan
c1e3e5de5c new package "DSRC" (bioinformatics) (#7680) 
* new package "DSRC" (bioinformatics)

* remove uncommented line

* get rid of unnecessary import

* convert to MakefilePackage class

* get rid of make() in install phase, remove spaces

* make flake8 happy!
 2018-04-08 08:21:02 -05:00
Axel Huebl
2b0252ccb3 Add Package: nlohmann_json (#7690) 
Adds a spack package for the JSON C++ library
  https://github.com/nlohmann/json
 2018-04-07 11:00:00 -05:00
Axel Huebl
5c98b8bde5 Catch2: make install (#7668) 
Add a proper install variant for Catch(2).

This allows to use Catch2 downstram with `pkg-config` and
CMake's `find_package` commands via standard environment hints.
 2018-04-07 10:36:10 +02:00
peetsv
3bf863bb06 py-pyfaidx: adding new package (#7684) 
* py-pyfaidx: adding new package

* updating the url
 2018-04-06 20:07:35 -05:00
carns
e1856f3129 Darshan 3.1.6 (#7686) 
* update darshan-util to 3.1.6, add bzip2 option

* add darshan-runtime 3.1.6
 2018-04-06 16:49:07 -05:00
Eric Müller
58a57bf391 Fix build of xerces-c (#7611) 
The build requires libiconv (but it doesn't find it when not providing
LDFLAGS).
 2018-04-06 15:46:47 -05:00
Sergey Kosukhin
c328c667c0 Package 'serf': link to the spack provided zlib installation. (#7667) 2018-04-06 15:44:39 -05:00
lingnanyuan
fa3edd4af0 hapdip: Create new package and its dependency k8. (#7685) 
* k8: Create new package.

* hapdip: Create new package.

* Change description.
 2018-04-06 15:40:58 -05:00
lingnanyuan
27b1069e0c readfq: Create new package. (#7673) 
* readfq: Create new package.

* fix flake8 error
 2018-04-05 17:23:25 -05:00
Adam J. Stewart
bde69177be Don't prepend Tcl/Python to PATH if in system directory (#7677) 2018-04-05 14:39:05 -07:00
healther
a63450bc45 add package py-discover (#7671) 
Change-Id: I67b9e4eb4dfd3a962b7fe8840f5eb012fcd009cc
 2018-04-05 09:18:07 -05:00
peetsv
ceab7e5f54 rsync: adding version 3.1.3 (#7669) 2018-04-04 18:13:50 -05:00
healther
6a0f9ccf82 make view understand hashes (#7573) 
Fixes #7548

This updates the "spack view" command to use the same parsing logic
as "spack install" on the user-provided specs. For example you can
provide a DAG hash to refer to an exact installed spec instead of
specifying name, compiler, etc.
 2018-04-04 10:40:56 -07:00
Denis Davydov
3f14212ded octopus: add 7.3 (#7666) 2018-04-04 16:35:03 +02:00
Massimiliano Culpo
79251dde40
mvapich2: added version 2.3rc1 + variant to use alloca if available (#7595) 
* mvapich2: added version 2.3rc1 + variant to use alloca if available

* mvapich2: removed version 1.9 + cleaned recipe
 2018-04-04 09:41:37 +02:00
Adam J. Stewart
c50628ebdf Fix bug in test_find_with_globbing unit test (#7652) 2018-04-03 22:27:17 -07:00
Zack Galbreath
f613437a44 Do not call sys.exit() in except block (#7659) 
When an invalid spec is encountered by `parse_specs()` we now raise a
`SpackError` instead of calling `sys.exit()`
 2018-04-03 22:22:28 -07:00
lingnanyuan
b1a5764956 soapdenovo-trans: Create new package. (#7649) 
* soapdenovo-trans: Create new package.

* change header

* soapdenovo-trans: change package type to makefile.

* soapdenovo-trans: fix flake8 error.
 2018-04-03 17:46:25 -05:00
Denis Davydov
338fa8d7d6 fix dealii dependencies for Clang 9.1.0 C++17 (#7644) 
* fix boost and muparser for Clang 9.1.0 with C++17

* muparser: add C++11 flags

* dealii: temporary disable python by default

* dealii: make CMake find right python
 2018-04-03 10:15:09 -05:00
Matthias Diener
17ace14751 lsof: create new package (#7660) 2018-04-02 21:29:19 -05:00
Howard Pritchard
32c8237256 Open MPI: add 3.0.1 (#7661) 
Open MPI 3.0.1 bug fix release is out the door!

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2018-04-02 19:22:59 -05:00