Commit graph

24722 commits

Author SHA1 Message Date
Adam J. Stewart
2421e489e4
py-sqlalchemy: fix import tests (#23920) 2021-05-26 20:02:33 +00:00
lukebroskop
f3e3e5514d
CrayPE update for libunwind (#23821) 2021-05-26 20:10:51 +02:00
Todd Gamblin
b596abe037
Switch from heroku to slack.spack.io for slack invite badge (#23924) 2021-05-26 08:07:57 +00:00
Harmen Stoppels
b75ad9f950
mbedtls: make perl a test dependency (#23897) 2021-05-26 09:15:09 +02:00
Vicente Bolea
051bcef697
Adds vtk-m release 1.6.0-rc2 (#23895) 2021-05-25 18:01:17 -07:00
Davide Mancusi
de27e6cbdd
root: add CLING_CXX_PATH variable to CMake build (#23888)
Closes issue #23886.
2021-05-25 19:50:21 -05:00
Richarda Butler
1b6b5e1611
AML: Add submodules to develop and master versions (#23903)
Co-authored-by: Kayla Richarda Butler <butler59@quartz1916.llnl.gov>
2021-05-25 17:34:11 -07:00
Adam J. Stewart
dbde984de1
json-c: fix install on macOS (#23912) 2021-05-26 00:05:09 +00:00
Adam J. Stewart
3c587b14ad
bash: add v5.1 and patches (#23911) 2021-05-26 00:00:37 +00:00
Harmen Stoppels
f2ce57bf77
Add xxd for hsa-rocr-dev build script (#23855) 2021-05-25 20:58:30 +00:00
Vanessasaurus
3cef5663d8
adding json export for spack blame (#23417)
I would like to be able to export (and save and then load programatically)
spack blame metadata, so this commit adds a spack blame --json argument,
along with developer docs for it

Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2021-05-25 12:40:08 -06:00
Vanessasaurus
b44bb952eb
first set of work to allow for saving local results with spack monitor (#23804)
This work will come in two phases. The first here is to allow saving of a local result
with spack monitor, and the second will add a spack monitor command so the user can
do spack monitor upload.

Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2021-05-25 11:29:34 -07:00
Hervé Yviquel
e22da8df05
extrae package: add variant for cuda and cupti (#23522) 2021-05-25 10:34:28 -07:00
Robert Cohn
c5389c430b
Fix cross references in inteloneapipackage doc (#23744)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-05-25 09:57:49 -07:00
Seth R. Johnson
a284edb852
ForTrilinos: add smoke test (#23664) 2021-05-25 10:10:19 -06:00
Michael Kuhn
29deb399b4
iwyu: link clang resources in the right location (#23885)
iwyu cannot find clang's headers if they are installed in separate
prefixes, see:
https://github.com/include-what-you-use/include-what-you-use#how-to-install
2021-05-25 09:01:44 -06:00
eugeneswalker
c9b957b71a
variorum: unpin hwloc dependency (#23742) 2021-05-25 16:57:30 +02:00
Tamara Dahlgren
929d1de3e5
Stand-alone/Smoke tests: copy cached test sources to test stage (#23713) 2021-05-25 07:24:32 -07:00
Harmen Stoppels
56e7e2a406
MesonPackage: make "default_library" a multi-valued variant (#23540)
Currently if one package does `depends_on('pkg default_library=shared')`
and another does `depends_on('pkg default_library=both')`, you'd get a
concretization error.

With this PR one package can do `depends_on('pkg default_library=shared')` 
and another depends_on('default_library=static'), and it would concretize to 
`pkg default_library=shared,static`

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-05-25 12:07:00 +02:00
Harmen Stoppels
6d29f0d61f
strace: add v5.8-5.12 (#23883) 2021-05-25 12:02:24 +02:00
Harmen Stoppels
cb13ba0fd8
rpm: overhaul package recipe (#23819) 2021-05-25 11:59:19 +02:00
Olivier Cessenat
7c73a786b3
qucs: add new package (#23849)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-05-25 09:10:52 +02:00
estewart08
cbd46be21b
[AMD] - Update rocm-openmp-extras to 4.2.0. (#23870) 2021-05-25 08:58:49 +02:00
Tamara Dahlgren
bed1644d52
Fix packaging guide table's build system links (#23879) 2021-05-25 07:13:00 +02:00
HDF-EOS Tools Information Center
00963149e1
Fix hyperlink formatting in docs (#23846) 2021-05-25 07:09:07 +02:00
Chris White
fb2c3cce6d
Add tools and example variants to axom (#23877) 2021-05-25 01:01:58 +00:00
Cyrus Harrison
231490ce9a
ascent package: capture spack global flags in host config (#23826) 2021-05-24 16:50:38 -07:00
Cyrus Harrison
9426b26c22
dray package: capture spack global flags in host config (#23827) 2021-05-24 16:43:02 -07:00
Michael Kuhn
bb13ce308a
iwyu: add 0.15 (#23876) 2021-05-24 23:28:49 +00:00
Chris Richardson
51a0228aed
Fenicsx packages: updates for 0.1.0 releases (#23836) 2021-05-24 15:57:04 -07:00
Desmond Orton
b7bcd31d9b
raxml-ng update to version 1.0.2 (#23764)
* Package update to version 1.0.2

* switched submodule boolean to string

* switched from string to bools

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-05-24 13:54:31 -05:00
Seth R. Johnson
d46e49ef7a
SuperLU: add v5.2.2 and cmake tweaks (#23863)
- Changed to cmake package with backward compatibility with older
  makefile
- Removed unused cmake variable 'blas_blas_libs'
- Added new version 5.2.2 which change to external blas variable
- Remove unused tcsh dependency
- Change URL to use git repository for current and future versions
- Add older 4.2 version
- Add conflict for older versions with apple-clang
2021-05-24 13:04:21 +02:00
Andreas Baumbach
b7d0b3ea75
gdk-pixbuf: restrict patch application to meson packages (#23838) 2021-05-24 09:36:12 +02:00
Andreas Baumbach
4153c2e319
libedit: add missing pkgconfig dependency (#23839) 2021-05-24 09:35:24 +02:00
Andreas Baumbach
7f56394af9
ncdu: add v1.15.1 (#23840) 2021-05-24 09:34:45 +02:00
Valentin Volkl
b6416376db
alpaka: add new package (#23576) 2021-05-24 09:28:49 +02:00
Hang Yan
e952aa890e
chapel: add versions up to 1.24.1 (#23365) 2021-05-24 09:27:42 +02:00
Robert Mijakovic
9a185b1d0b
ucx: add v1.10.1 (#23858)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-05-24 09:16:08 +02:00
Filippo Spiga
b793422e12
CUDA: add v11.3.1 (#23864) 2021-05-24 08:48:44 +02:00
Valentin Volkl
27e9f02d32
chaplin: add new package (#23866) 2021-05-24 08:47:52 +02:00
Vanessasaurus
ec00d68ba1
updating debugedit to be built from its production repository (#23851)
Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2021-05-22 21:27:32 -07:00
Todd Gamblin
d45674c1cb
Spack can Use RHEL8's platform-python if nothing else is available. (#23857)
This adds RHEL8's `/usr/libexec/platform-python` to Spack's list of preferred
pythons. It will only be used if no other `python` is available in the `PATH`.

We have been testing with this python for a while now, and it seems to do all
that we need. If Spack one day isn't able to work with it, we'll take it out,
but for now it is useful to allow Spack to be used on RHEL8 without a dedicated
`python` installation.
2021-05-22 15:35:07 -07:00
Todd Gamblin
17473a08ff Merge tag 'v0.16.2' into develop 2021-05-22 15:22:34 -07:00
Todd Gamblin
f1fe03cd59 Update CHANGELOG and release version for v0.16.2 2021-05-22 14:57:30 -07:00
Massimiliano Culpo
80f0c78f00 Style fixes for v0.16.2 release 2021-05-22 14:57:30 -07:00
Todd Gamblin
818664d55a performance: speed up existence checks in packages (#23661)
Spack doesn't require users to manually index their repos; it reindexes the indexes automatically when things change. To determine when to do this, it has to `stat()` all package files in each repository to make sure that indexes up to date with packages. We currently index virtual providers, patches by sha256, and tags on packages.

When this was originally implemented, we ran the checker all the time, at startup, but that was slow (see #7587). But we didn't go far enough -- it still consults the checker and does all the stat operations just to see if a package exists (`Repo.exists()`).  That might've been a wash in 2018, but as the number of packages has grown, it's gotten slower -- checking 5k packages is expensive and users see this for small operations.  It's a win now to make `Repo.exists()` check files directly.

**Fix:**

This PR does a number of things to speed up `spack load`, `spack info`, and other commands:

- [x] Make `Repo.exists()` check files directly again with `os.path.exists()` (this is the big one)
- [x] Refactor `Spec.satisfies()` so that a checking for virtual packages only happens if needed
      (avoids some calls to exists())
- [x] Avoid calling `Repo.exists(spec)` in `Repo.get()`. `Repo.get()` will ultimately try to load
      a `package.py` file anyway; we can let the failure to load it indicate that the package doesn't
      exist, and avoid another call to exists().
- [x] Fix up some comments in spec parsing
- [x] Call `UnknownPackageError` more consistently in `repo.py`
2021-05-22 14:57:30 -07:00
Massimiliano Culpo
76c5a02125 ASP-based solve: minimize compiler mismatches (#23016)
fixes #22718

Instead of trying to maximize the number of
matches (preferred behavior), try to minimize
the number of mismatches (unwanted behavior).
2021-05-22 14:57:30 -07:00
Drew Whitehouse
0fd94d4486
new package for openvdb (#23581) 2021-05-22 23:05:10 +02:00
Olivier Cessenat
fb156ae4bc
New package: sparskit (#23848) 2021-05-22 16:25:28 -04:00
Massimiliano Culpo
30dd61264a ASP-based solver: no intermediate package for concretizing together (#23307)
The ASP-based solver can natively manage cases where more than one root spec is given, and is able to concretize all the roots together (ensuring one spec per package at most).

Modifications:
- [x] When concretising together an environment the ASP-based solver calls directly its `solve` method rather than constructing a temporary fake root package.
2021-05-22 11:51:21 -07:00