* py-packaging: add 21.3
* Update var/spack/repos/builtin/packages/py-packaging/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
A part of the gpgme testsuite by default even runs during normal
make and make install phases, creating a public keyring in ~/.gnupg.
Prevent this and avoid build failures in containers due to another
problem of the test suite and fix a test case of the new 0.16.0 release.
When the uidmap tools are installed on a system, this allows to run
containers as unprivileged user (rootless and daemonless) slimilar
to singularity, but using a familiar CLI: "alias docker=podman"
This is helpful to run e.g. spack builds in containers to reproduce
build failures from CI without requiring a installation of docker.
The required dependencies of podman are added as well.
Fix to not attempt to patch a nonexisting file for old versions
when building with gcc-11. Skip the build-time tests as all access
the X DISPLAY and open many windows on the screen.
I was browsing package metadata, as one does on a Sunday, and stumbled across a new kind of version attribute - brancch! I suspect this is supposed to be "branch."
Update flux-core and flux-sched package.py to include latest releases.
For flux-sched:
- Add patch to disable false-positive-happy valgrind test
- pin yaml-cpp to 0.6.3 due to issue described at:
https://github.com/flux-framework/flux-sched/issues/886
Starting with meson 0.60, unknown args produce errors and
the -Dx11 arg is only present in @:2.40
https://gitlab.gnome.org/GNOME/gtk-osx/-/issues/44
Add tiff variant: Default disabled since fails the tests in part.
Only libtiff@:3.9 pass, but these old versions have severe security issues.
Deprecate @:2.41 as they are affected by the high-severity CVE-2021-20240:
https://nvd.nist.gov/vuln/detail/CVE-2021-20240
Remove a custom bootstrapping procedure to
use spack.bootstrap instead
Modifications:
* Reference count the bootstrap context manager
* Avoid SpackCommand to make the bootstrapping
procedure more transparent
* Put back requirement on patchelf being in PATH for unit tests
* Add an e2e test to check bootstrapping patchelf
* Fix version constrains in py-ipykernel and py-ipython
Before the fix:
```
$ spack spec py-ipykernel@6.4.1 ^py-jupyter-client@7.0.6
==> Error: py-ipykernel@6.4.1 ^py-jupyter-client@7.0.6 is unsatisfiable, conflicts are:
no version satisfies the given constraints
```
After the fix:
```
```
(thanks god the old concretizer is still there - it provides sane error messages!)
* Fix py-ipython recipe
* Revert "Fix py-ipython recipe"
This reverts commit d65071665f002fa20721c3d87ae25354bec06ec5.
* added package gptune with all its dependencies: adding py-autotune, pygmo, py-pyaml, py-autotune, py-gpy, py-lhsmdu, py-hpbandster, pagmo2, py-opentuner; modifying superlu-dist, py-scikit-optimize
* adding gptune package
* minor fix for macos spack test
* update patch for py-scikit-optimize; update test files for gptune
* fixing gptune package style error
* fixing unit tests
* a few changes reviewed in the PR
* improved gptune package.py with a few newly added/improved dependencies
* fixed a few style errors
* minor fix on package name py-pyro4
* fixing more style errors
* Update var/spack/repos/builtin/packages/py-scikit-optimize/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* resolved a few issues in the PR
* fixing file permissions
* a few minor changes
* style correction
* minor correction to jq package file
* Update var/spack/repos/builtin/packages/py-pyro4/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* fixing a few issues in the PR
* adding py-selectors34 required by py-pyro4
* improved the superlu-dist package
* improved the superlu-dist package
* moree changes to gptune and py-selectors34 based on the PR
* Update var/spack/repos/builtin/packages/py-selectors34/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
