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Author SHA1 Message Date
Glenn Johnson
386f0e577a New package - r-maptools 
Tools for reading and handling spatial objects.
 2016-07-30 17:26:31 -05:00
Glenn Johnson
7207ce2a18 New package - r-caret 
Classification and Regression Training
 2016-07-30 16:53:54 -05:00
Glenn Johnson
20e52e5052 New package - r-glmnet 
Lasso and Elastic-Net Regularized Generalized Linear Models
 2016-07-30 16:38:00 -05:00
Glenn Johnson
e9944150a5 New package - r-vcd 
Visualizing Categorical Data
 2016-07-30 16:28:43 -05:00
Glenn Johnson
fc1804974c New package - r-multcomp 
Simultaneous Inference in General Parametric Models.
 2016-07-30 16:09:57 -05:00
Glenn Johnson
12167e8f37 New package r-randomforest 
Breiman and Cutler's Random Forests for Classification and Regression.
 2016-07-30 15:39:28 -05:00
Glenn Johnson
ee7acc6b13 New package r-car 
Companion to Applied Regression.
 2016-07-30 15:10:25 -05:00
alalazo
f4422dc165 qa : fixes #1370 (no flake8 on python 2.6, coveralls only python 2.7) 2016-07-30 18:49:23 +02:00
Todd Gamblin
e04662f84f Merge pull request #1344 from LLNL/bugfix/py-nose-nosetests 
do not ignore nosetests script in py-nose
 2016-07-28 10:19:13 -07:00
becker33
5caaa2cd75 Merge pull request #1331 from adamjstewart/fixes/mvapich2 
MVAPICH2 depends on libpciaccess
 2016-07-28 09:52:51 -07:00
becker33
3759f62cba Merge pull request #1235 from davydden/pkg/p4est_run_tests 
p4est: use run_tests instead of a variant
 2016-07-27 18:36:36 -07:00
Todd Gamblin
458deaae5e Merge pull request #1350 from adamjstewart/fixes/openssl 
Fix OpenSSL url_for_version
 2016-07-27 08:08:00 -07:00
becker33
e4ced765f1 Merge pull request #1353 from epfl-scitas/qa/minor_cleanup 
qa : minor cleanup
 2016-07-25 10:34:43 -07:00
becker33
969e785d94 Merge pull request #1352 from glennpj/r_googlevis 
New package - r-googlevis
 2016-07-25 10:25:47 -07:00
becker33
5b7ec8de95 Merge pull request #1351 from glennpj/r_htmlwidgets 
New packages - R htmlwidgets
 2016-07-25 10:25:19 -07:00
becker33
e19872e77f Merge pull request #1347 from glennpj/rdeps 
Add dependency type to r- packages
 2016-07-25 10:19:32 -07:00
alalazo
5cfaa557d3 qa : flake8 issues 2016-07-25 10:19:58 +02:00
alalazo
23006d1195 spec : removed dead code 2016-07-25 09:05:50 +02:00
Glenn Johnson
27986c9edf New packages - R htmlwidgets 2016-07-24 16:43:35 -05:00
Glenn Johnson
b7bf88c761 New package - r-googlevis 2016-07-24 16:38:36 -05:00
Adam J. Stewart
29278090eb Fix OpenSSL url_for_version 2016-07-24 15:19:27 -05:00
Glenn Johnson
a8855f48aa Add dependency type tp r- packages 
This PR adds the `nolink` dependency type to r- package dependencies.
This is needed due to the new dependency types in Spack. A couple of
packages were updated with new versions as well.
 2016-07-23 19:43:55 -05:00
Greg Lee
773bca159a do not ignore nosetests script in py-nose 2016-07-22 15:49:36 -07:00
becker33
7220bc1766 Merge pull request #1340 from adamjstewart/features/create 
Use example deptypes in newly created packages
 2016-07-22 14:25:12 -07:00
Todd Gamblin
395c616a48 Merge pull request #950 from xjrc/packages/python 
Enhancement Proposal: Make Python Spack Installs Ignore User Configuration
 2016-07-22 13:56:19 -07:00
Adam J. Stewart
ebbcebac62 Use example deptypes in newly created packages 2016-07-22 13:55:00 -05:00
Joseph Ciurej
fa92f58167 Adding temporary script that fixes all Python extensions w/ 'setup_py'. 2016-07-22 11:17:19 -07:00
Joseph Ciurej
ac2e0962ce Improved the build flag construction code in the python install method. 2016-07-22 11:12:02 -07:00
Joseph Ciurej
fb2d2303d6 Fixed a bug that was causing Python installs to be affected by user config. 2016-07-22 11:11:08 -07:00
Todd Gamblin
f5b4664c7c Merge pull request #1336 from glennpj/rcase 
Fix alpha case of dependencies for some r-packages
 2016-07-22 10:08:14 -07:00
alalazo
00d7fd8e21 test_install : removed commented code 2016-07-22 18:14:36 +02:00
Todd Gamblin
adffba5081 Merge pull request #1230 from hartzell/update-jdk 
Add URL and md5 for jdk-8u92.
 2016-07-21 22:06:29 -07:00
Glenn Johnson
e083c91d5e Fix alpha case of dependencies. 
A while ago I was asked to convert packages to all lowercase. That was
done but some dependencies did not get converted in the specification.
This commit fixes that as well as a couple of urls that need to be made
explicit and a missing dependency on jdk.
 2016-07-21 19:58:04 -05:00
Todd Gamblin
ed737cb2a2 Merge pull request #1333 from LLNL/features/no-openssl-pinging 
Remove remote website pinging from OpenSSL
 2016-07-21 16:46:59 -07:00
Todd Gamblin
488550c2e6 Merge pull request #1334 from hartzell/add-gcc-5.4.0 
Update gcc package with info about gcc-5.4.0
 2016-07-21 16:37:31 -07:00
Todd Gamblin
8523f75e6c Remove remote website pinging from OpenSSL 
- OpenSSL no longer checks remote versions on the openssl site.

- Spack is used on systems that aren't connected to the internet, and
  this check is probably in the wrong place and affects too many
  commands.  We can work on figuring out a better, more configurable
  place to put a check like this.
 2016-07-21 16:35:20 -07:00
Todd Gamblin
4707362ccd Merge pull request #1263 from hartzell/lmod-needs-tcl 
The lmod package should depend_on('tcl')
 2016-07-21 16:32:54 -07:00
becker33
dd5b1ac098 Merge pull request #1335 from LLNL/crayxc-detection 
Crayxc detection
 2016-07-21 15:06:42 -07:00
Gregory Becker
bcbe9c02da Added cray wrapper names directory to spack_env_paths so the spack compiler wrapper will remove them from the environment (prevents hang) 2016-07-21 14:50:23 -07:00
Gregory Becker
1544f98ee0 fixed flake8 errors 2016-07-21 14:36:10 -07:00
Gregory Becker
f0d5317913 fixed 2016-07-21 14:11:34 -07:00
Gregory Becker
2ae7429b18 Bug fix for cray_xc platform 2016-07-21 14:04:22 -07:00
George Hartzell
4efe022165 Update with info about gcc-5.4.0 2016-07-21 15:36:22 -04:00
Mitchell Devlin
796308ed85 edit 2016-07-21 13:39:27 -05:00
George Hartzell
4c105895ab Fix flake8 violations 2016-07-21 14:24:51 -04:00
George Hartzell
9523e50732 Fix shebang line in tcl scripts 
Lmod's configure script goes to the trouble of finding
tclsh.  This change uses that info to rewrite the #! lines
in the tcl scripts so that they call the tclsh that the
configure script discovered.

It needs to massage the existing shebang lines into something
that the sed statement in the makefile can manipulate and
it needs to add the path_to_tclsh info into the set of sed
statements.

Checked with versions 6.4.1 and 6.3.7 (the checksum for 6.0.1 is
incorrect, a fix for another time).
 2016-07-21 13:58:16 -04:00
George Hartzell
52f0249c61 tcl is actually a runtime dependency. 
lmod uses tclsh at runtime, so adjust the depends_on accordingly
(thanks @davydden!).
 2016-07-21 13:51:03 -04:00
George Hartzell
a27cb639d8 The lmod package should depend_on('tcl') 
The lmod package needs a tclsh.  Up until now it just assumed
that one was available on the system.

This change adds a depends_on('tcl') to the lmod package.

The tcl package installs a tclsh script with an embedded version
number (e.g. tclsh8.6) but the lmod configuration looks for tclsh.
This change extends the tcl package to symlink tclshX.Y to tclsh in
the tcl package bin directory.
 2016-07-21 13:51:03 -04:00
Adam J. Stewart
cf8f14780f MVAPICH2 depends on libpciaccess 2016-07-21 11:13:17 -05:00
Todd Gamblin
098af17971 Merge pull request #1208 from paulhopkins/bugfix/github1196-specify-preferred-variants 
Bugfix/github1196 specify preferred variants
 2016-07-21 08:36:19 -07:00