Commit graph

9982 commits

Author SHA1 Message Date
Greg Becker
bd60e0f137
fix cycle dependency in libxml+python (#13847)
* fix cycle dependency in libxml+python
* comment why we need these dependencies
2020-01-29 12:39:55 -08:00
noguchi-k
da189b8d1d
Fastx-toolkit package: patch for Fujitsu compiler (#14218)
Specify the scope of pragma pack
2020-01-29 11:45:37 -08:00
Adam J. Stewart
ed4d544e8f
Fix py-pillow tests (#14670) 2020-01-29 13:24:44 -06:00
Robert Pavel
b142914b24
Added MiniAMR@1.4.4 (#14667) 2020-01-29 13:24:22 -06:00
Robert Pavel
30c8e1d8a0
Added xsbench@19 to Version List (#14668) 2020-01-29 13:24:03 -06:00
Jennifer Herting
549aae7f72
[py-griddataformats] added new versions (#14671) 2020-01-29 13:23:22 -06:00
Michael Kuhn
52a7f94d9e
pythia8: add new package (#14665) 2020-01-29 11:40:39 -06:00
Matthias Wolf
4e3617fe1d
py-pyperf: add 1.6.{0,1} (#14662) 2020-01-29 09:00:03 -06:00
Matthias Wolf
1af36f0cdc
flatbuffers: add 1.11.0 (#14663) 2020-01-29 08:58:41 -06:00
Matthias Wolf
53d891a501
py-black: update url, add 19.3b0 (#14664) 2020-01-29 08:56:54 -06:00
Andrew W Elble
9d7e482497
git: add version 2.25.0 and fixup pcre dependency (#14649)
* git: add version 2.25.0 and fixup pcre dependency

pcre2 became optional in 2.14 and the default in 2.18. I noticed this
as git was compiling against the system pcre2 (spack was
specifying pcre as the dependency).

* missed a chunk from my internal repo
2020-01-28 21:01:25 -06:00
Glenn Johnson
e710656310 Set netcdf-fortran to build serially with Intel compiler (#14461)
* Set netcdf-fortran to build serially with Intel compiler

This PR turns off parallel builds when the Intel compiler is used.
Builds with the Intel compiler will fail otherwise.

* Change how parallel build is handled

Use patch from netcdf-fortran project to turn off parallel buildi for
version 4.5.2.
2020-01-28 15:13:51 -06:00
darmac
2b0b340aab racon: support aarch64 and fix install error (#14529)
* racon: support aarch64 and fix install error

* add aarch64 patch for racon
2020-01-28 15:12:40 -06:00
noguchi-k
ea0a549db3 pcma: set return value and change return type of function (#14579) 2020-01-28 15:08:35 -06:00
t-karatsu
492b600d29 diffutils: Changed the handling of undeclared functions from warning … (#14593)
* diffutils: Changed the handling of undeclared functions from warning to error.

* diffutils: Change the handling of warnings or error

* Delete '-Werror=implicit-function-declaration'

* Add '-Qunused-arguments'
2020-01-28 15:06:37 -06:00
Glenn Johnson
0605fc1557 Build graphite2 with Intel compiler (#14636)
This PR sets the definition of REGPARM when building with the Intel
compiler.
2020-01-28 15:03:13 -06:00
Matthias Diener
94def872ee Moreutils: add new package (#14653)
* moreutils: add new package

* fix flake8
2020-01-28 15:02:07 -06:00
Brian Van Essen
f17ce36da2 Fixed path for CEREAL and Protobuf (#14641) 2020-01-28 15:01:50 -06:00
Axel Huebl
2b6106524a openPMD-api: With ADIOS2 by Default (#14643)
Replace the deprecated ADIOS1 backend default with ADIOS2 default.
Disable sz since we do not need it and it conflicts with supported
version ranges between ADIOS2 and ADIOS1 if someone enables both.
2020-01-28 15:01:15 -06:00
noguchi-k
635fc62de0 powerapi: add a space between literal and identifier (#14645) 2020-01-28 14:59:59 -06:00
noguchi-k
da091c0cf5 med: add a space between literal and identifier (#14646) 2020-01-28 14:59:23 -06:00
Ben Morgan
16da648d03 intel-tbb: Fix install names on Darwin (#14650)
* intel-tbb: Fix install names on Darwin

Intel-TBB's libraries on Darwin are installed with "@rpath" prefixed
to their install names. This was found to cause issues building the root
package on Darwin due to libtbb not being found when running some of the
generated tools linking to it.

Follow example from other packages with the same issue and fixup up install
names for intel-tbb post install.

* intel-tbb: fix flake8 errors
2020-01-28 14:57:25 -06:00
iarspider
67c6d99219 Fix for #14148 (#14595)
* Dirty hack to fix #14148

* A better way of checking if a package is taken from system

* Update var/spack/repos/builtin/packages/qt/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update qt/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-01-28 14:15:29 -06:00
Christoph Junghans
12b0340d2f ninja: add v1.10.0 (#14647) 2020-01-28 09:34:31 -08:00
Adam Moody
6ab2c3caa3 mpifileutils: add v0.10 (#14644)
Signed-off-by: Adam Moody <moody20@llnl.gov>
2020-01-27 20:33:26 -08:00
Joe Koning
e01c39019c Add the py-merlinwf package (#14622)
* Add the py-merlinwf package

* Fix importlib-resources package name for spack naming convention.

* Add build to dependencies and add updated versions.

* Remove pytest-runner dependency.

* Fix typo.

* Add the py-tabulate dependency.

* Add sha256 for version 1.0.0

* Change to maestro version 1.1.5.

* Increase to version 1.0.4.

* Bump maestrowf version and prepare for new pypi version.

* Add sha256sum for version 1.1.5

* Add version 1.1.1.
Update maestrowf version to 1.1.7

* Add versions 1.0.5, 1.1.0, 1.1.1 and potential 1.2.0.

* Add version 1.2.0 and when on maestrowf@1.1.6.

* Add version 1.2.2 , remove 1.2.1 and 1.1.0.

* Update var/spack/repos/builtin/packages/py-merlinwf/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-merlinwf/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Remove mysql variant until new mysql interface module is enabled.
The mysql code may be removed.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-01-27 17:26:43 -06:00
Erik Schnetter
0f3ae864a5 asdf-cxx: new package (#14637) 2020-01-27 14:50:18 +01:00
Erik Schnetter
b7b27d3862 amrex: Update to version 20.01 (#14635)
Now using Github releases instead of git commits.
2020-01-27 10:07:46 +01:00
Sinan
0e86961b84 pygdal and gdal versions should be in lockstep (#14630) 2020-01-26 18:35:16 -06:00
Adam J. Stewart
71f47b3b26
Add py-vermin package (#14631) 2020-01-26 18:34:56 -06:00
Erik Schnetter
02e077a7fa simulationio: Correct HDF5 dependency bounds (#14626)
The HDF5 dependency bound was inverted. (How did this ever compile? There is a cmake check.)
2020-01-26 17:22:43 -06:00
Erik Schnetter
87c55b79c5 hwloc: New version 2.1.0 (#14627) 2020-01-26 17:22:26 -06:00
Erik Schnetter
06e100d5cc curl: New version 7.68.0 (#14625) 2020-01-26 17:06:38 -06:00
Adam J. Stewart
f8be90cf3f
Add TensorFlow 1.15.2 (#14624) 2020-01-26 15:41:09 -06:00
Erik Schnetter
a26e5caa57 h5cpp: Download from github release instead of git repo (#14573)
* h5cpp: Download from github release instead of git repo

* Correct typo in package description
2020-01-25 18:39:36 -06:00
Adam J. Stewart
cb3f4081a0
Add TensorFlow 2.0.1 (#14623) 2020-01-25 12:45:09 -06:00
Glenn Johnson
c700200959 Get vtk-8.2.0 to build (#14562)
This PR adds some extra dependencies needed for vtk-8.2.0. It also
handles the variable name changes to turn off some of the external
libraries.
2020-01-25 12:44:51 -06:00
Hadrien G
f569577747 acts-core: Add and adapt to ACTS v0.14.0 and v0.15.0 (#14580)
* Add and adapt to ACTS v0.14.0

* Add v0.15.0 too
2020-01-25 12:35:53 -06:00
Brian Homerding
1fd335d654 Removing flang variant from llvm package (#14600) 2020-01-25 12:26:11 -06:00
Adam Moody
1e09de73b7 libcircle: add v0.3 (#14611) 2020-01-25 12:22:21 -06:00
Greg Becker
a57edb7029 configure z3+python to build python libraries in its own prefix (#14604) 2020-01-24 21:16:48 -08:00
Glenn Johnson
71243f3f7b Get py-torch to build caffe2 (#14619)
* Get py-torch to build caffe2

This PR gets the py-torch package to build with caffe2, and closes
issue #14576. If building on a machine with CUDA but no GPU the build
will try to build with all compute capabilities. Older compute
capabilities are not supported so the build will fail. The list of
capabilities can be passed to the build using values set in the
cuda_arch variant. Likewise, conflicts are also set to catch if the
unsupported capabilities are listed in cuda_arch.

This PR also sets version constraints on using an external mkldnn for
newer versions. Currenly, only versions up to 0.4 use an external mkldnn
library. Also, the cuda variant is set to True, which restores
previous behavior.

* Update var/spack/repos/builtin/packages/py-torch/package.py

Fix typo.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Adjust conflicts

This commit adjusts the conflicts. There is an issue with the
cuda_arch=20 conflicts directive as there is a conflicting dependency
with any version >=1.1 and a cuda_arch=20 dependency specified in
CudaPackage that gets trapped first.

* Use a common message for conflicts

This commit adds a variable to contain the bulk of the message stringi
for the cuda_arch conflicts. This is used along with a version string
in the conflicts directives messages.

* Fix the strings

- Use a multiline string for the cuda_arch_conflict variable.
- No need for format() in the msg value.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-01-24 22:57:16 -06:00
Mathew Cleveland
35db2d05b7 py-opppy package: add version 0_1_2 (#14229) 2020-01-24 18:58:22 -08:00
iarspider
bb29932362 py-pygdal package: 2.4.0 depends on gdal 2.4.1 (#14075) 2020-01-24 18:34:37 -08:00
plamborn
f8e0f4251d libhio: remove autoreconf method (#14283)
The autoreconf is not necessary and can cause errors.
2020-01-24 18:20:02 -08:00
健美猞猁
9a6b3b3a07 New package: MBDyn (#14438) 2020-01-24 18:14:14 -08:00
Glenn Johnson
80745128b3 harfbuzz package: add conflict for @2.3.1: with intel compiler (#14386)
harfbuzz 2.3.1 (and presumably all future versions after it) does
not build with the Intel compiler
2020-01-24 18:05:50 -08:00
Sajid Ali
12a261523e New package: p3dfft3 (#14508) 2020-01-24 17:20:36 -08:00
Kevin Huck
33d35768e6 Fixing GCC compiler setting for PDT package 2020-01-24 17:03:52 -08:00
Kevin Manalo
6fd2c66022 IOR package: add version 3.2.1 (#14582) 2020-01-24 16:56:59 -08:00