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Author SHA1 Message Date
Greg Becker
bd1a0a9ad4
view remove: directly check whether specs own files before removing from view (#16955) 
Bugfix for hardlinks and copies
 2020-06-08 06:43:52 +02:00
Mark W. Krentel
763760cfe0
hpcviewer, ibm-java: updates versions (#16987) 
hpcviewer: added v2020.05.
ibm-java:  added v8.0.6.10.
 2020-06-08 06:15:37 +02:00
iarspider
664c32efb4
py-ipykernel: added v5.1.1 (#16988) 2020-06-08 06:11:24 +02:00
Toyohisa Kameyama
b00f97f7cc
boost: Don't use pre-compiled headers for Fujitsu compiler (#16914) 
* boost: Dopn't use pre compile header.

* move %fj.
 2020-06-07 09:39:53 -05:00
John Jolly
33923320a8
rose: Add build dependencies for flex and bison (#16981) 2020-06-07 09:36:14 -05:00
Sinan
a2c6f6a703
py-gast: add version 0.3.3 (#16945) 
* py-gast: add version 0.3.3

* add python version constraints

Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
 2020-06-07 09:33:03 -05:00
iarspider
6498b752d1
Add rpy2@3.0.4 (#16924) 
* Add rpy2@3.0.4

* Style fixes

* Update package.py

* Proper Python version requirement
 2020-06-06 16:33:34 -05:00
Toyohisa Kameyama
7bc44fa165
ffr: fix mpi programs to use mpi compiler wrapper. (#16948) 2020-06-06 16:30:43 -05:00
vvolkl
8f291c7e95
[prmon] add package (#16949) 2020-06-06 16:29:42 -05:00
Michael Kuhn
ad2dd4be01
mongo-c-driver: Add 1.16.2 (#16956) 
This also updates libbson to the corresponding version and adds a few
missing older versions.
 2020-06-06 16:18:48 -05:00
Matthieu Dorier
543f9f91d4
added CTRE package (#16964) 2020-06-06 16:14:40 -05:00
John Jolly
46a751081d
gcc: Fix error 'size of array is negative' (#16969) 
gcc 9.3.0 and glibc 2.31 (found in the base install of Ubuntu 20.04)
cause the gcc package to error during build with the error:

    "size of array 'assertion_failed__####' is negative"

Previous to this fix, the error was resolved for v8.1.0 <= gcc <= v9.2.0
via two patches.

This fix backports those patches for v5.3.0 <= gcc <= v7.4.0

Potentially these patches need to be backported to versions of gcc
before v5.3.0, but other compile issues need to be resolved for earlier
versions of gcc first.

Fixes #16968
 2020-06-06 16:14:11 -05:00
Tom Payerle
885808cc13
intel-tbb: Fix for #16938 add custom libs method (#16972) 
* intel-tbb: Fix for #16938 add custom libs method

Override the libs method to look for libraries of form libtbb*
(instead of inherited which looks for libintel-tbb*)

* Fixing pre-existing flake8 issues
 2020-06-06 16:12:46 -05:00
darmac
c835b93109
Add new package: py-louie (#16983) 2020-06-06 16:02:15 -05:00
darmac
77fbdff8a2
Add new package: lxc (#16984) 2020-06-06 16:00:59 -05:00
Sinan
36f9550178
py-mysqlclient: relax dependency constraint, add new versions (#16985) 
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
 2020-06-06 16:00:29 -05:00
Sinan
73d13461b1
ensure xla is turned off (#16974) 
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
 2020-06-06 15:51:19 -05:00
Sinan
7b6e1ae9d3
py-astunparse: add version 1.6.3 (#16946) 
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
 2020-06-06 15:50:16 -05:00
darmac
c5ac168f31
protobuf: support aarch64 @2.5.0 (#16862) 
* protobuf: support aarch64 @2.5.0

* refine cmake args

* fix patch name
 2020-06-06 15:47:30 -05:00
Nithin Senthil Kumar
944f0abb36
Update package for MVAPICH2 2.3.4 release (#16960) 
Co-authored-by: senthilkumar.16 <senthilkumar.16@nowlab.cse.ohio-state.edu>
 2020-06-06 12:51:27 +02:00
John Jolly
d755cc8ce9
iegenlib: add build dependencies for automake and libtool (#16980) 2020-06-06 09:55:14 +02:00
Andrew Gaspar
374f1a62e2
py-flake8: add version 2.8.2 (#16959) 
* py-flake8: add version 3.8.2
  * This version depends on different versions of py-pycodestyle
    and py-pyflakes
  * When built for python@:3.7, this depends on the
    py-importlib-metadata backport library
* py-pycodestyle: add version 2.6.0
* py-pyflakes: add version 2.2.0
 2020-06-05 18:25:42 -07:00
Amjad Kotobi
27eb7d9f5f
xrootd: add version 4.12.1 (#16966) 2020-06-05 18:18:00 -07:00
Sinan
a08f3dd505
New package: py-asteval (#16976) 2020-06-05 18:16:13 -07:00
Michael Kuhn
bfa05628cb pkgconf: Add 1.7.3 2020-06-05 18:14:20 -07:00
Christoph Junghans
76abf35813
cajita: got merged in cabana (#16971) 2020-06-05 12:38:07 -06:00
Tomoki, Karatsu
89cc507cf6
cmake: add linker option for VerifyFortranC when using Fujitsu compiler. (#16963) 2020-06-05 13:29:36 +02:00
Tomoki, Karatsu
c3be6d903a
cmake: modify FindMPI.cmake to treat Fujitsu MPI correctly (#16864) 2020-06-05 13:25:02 +02:00
Tomoki, Karatsu
8be7823cc5
suite-sparse: change the condition to add C11 flag. (#16859) 2020-06-05 13:17:41 +02:00
eugeneswalker
92e24950e5
add erlang version 23.0 (#16961) 2020-06-04 22:49:46 -07:00
Andrew Gaspar
0d43e41da0
Rust v1.44.0 (#16957) 
* libgit2 v1.0.1

* Rust 1.44.0

* Fix flake8
 2020-06-04 16:59:14 -05:00
Andrew Gaspar
0a3601a3f1
libgit2 v1.0.1 (#16952) 2020-06-04 16:34:19 -05:00
eugeneswalker
44ec8cc4e4
sz: patch in ctag optionality from robertu94/sz 3637a87f986c (#16953) 2020-06-04 09:16:11 -07:00
eugeneswalker
b64ec7fba4
pass hwloc to configure via useropt; use lib/ or lib64/ as appropriate for libunwind (#16941) 2020-06-04 06:58:33 -07:00
Adam J. Stewart
7617054a5d
Fix obsolete references to wx package (#16944) 2020-06-04 08:05:48 -05:00
Adam J. Stewart
0dd1d1f21a
NumPy: add 1.18.5 (#16943) 2020-06-04 08:05:22 -05:00
iarspider
ad50a02188
Add matplotlib 3.1.0 (#16921) 2020-06-03 22:26:13 -05:00
iarspider
6f4631ee48
Add py-jupyter-core@4.6.1 (#16922) 2020-06-03 22:25:38 -05:00
Seth R. Johnson
104a0c4259
Trilinos: add Stratimikos package (#16925) 
Stratimikos is an optional dependency for our project. It depends on
Thyra, and thyra has subpackages that should be enabled based on
tpetra/epetra/epetraext.
 2020-06-03 22:25:09 -05:00
Mathew Cleveland
02548c56fa
+ Add opppy-0_1_3 (#16926) 
+ Update maintainers for OPPPY package
+ remove "run" requirement for setuptools and sphynx

Co-authored-by: Cleveland <cleveland@lanl.gov>
 2020-06-03 22:16:46 -05:00
iarspider
16e8e434c2
Add pytest@5.3.4 (#16927) 
Dropping atomicwrites dependency: https://github.com/pytest-dev/pytest/issues/6147
 2020-06-03 22:15:01 -05:00
Seth R. Johnson
6f6c243699
mpfr: update hash for 4.0.2 patch (#16937) 2020-06-03 22:11:44 -05:00
Adam J. Stewart
61f61f3cde
py-openpyxl: add 3.0.3 (#16940) 2020-06-03 22:09:58 -05:00
Adam J. Stewart
5a7b555314
IPython: fix setuptools dependency (#16915) 
* IPython: fix setuptools dependency

* Remove extra colon
 2020-06-03 22:09:40 -05:00
Tom Payerle
0fb671a19e
Gnuplot fix 16928 (#16929) 
* gnuplot: Fix for #16928

Dependency for --with-wx flag mistyped (should be wxwidgets)

* Revert "gnuplot: Fix for #16928"

This reverts commit 2b85814e5ccf5c9b2c70c7959994e89c18fdc3d8.

* gnuplot: Fix for #16928

Dependency spec for --with-wx flag mistyped (should be wxwidgets, not
wx)
 2020-06-03 22:08:07 -05:00
shanedsnyder
748be57790
update darshan-runtime & darshan-util versions (#16934) 
* update darshan-runtime & darshan-util versions

includes up through the current release, 3.2.1

* remove pre-releases, not needed in spack
 2020-06-03 18:05:46 -07:00
eugeneswalker
0086c47546
patch lambda capture issue for @1.1906.1, fixed in upstream faodel@master (#16935) 2020-06-03 11:38:27 -07:00
Greg Becker
3347ef2de4
Feature: add option to create view by copying/relocating files (#16480) 
* add subcommand `spack view copy/relocate`

* update bash completions

* add copy/relocate commands to view tests

* allow copied views to be removed
 2020-06-03 09:45:13 -07:00
dmorone
600e2cfc4f
amber: updated dependency constraint on cuda (#16919) 
Fix message 'amber requires cuda version :10.1.243, but spec asked for 10.2.89'
 2020-06-03 13:17:36 +02:00
Amjad Kotobi
eed82a19be
openssh: added v8.3p1 and v8.1p1 (#16917) 2020-06-03 11:28:42 +02:00