Andreas Baumbach
c0a2e8651b
new package: py-pandocfilters ( #13418 )
...
dependency of py-nbconvert
2019-10-27 22:22:25 -05:00
Andreas Baumbach
ea6e279bbc
LLVM code-signing on OSX: link to the offical documentation ( #13428 )
...
* LLVM code-signing on OSX: link to the offical documentation
* LLVM: update setup_environment method
2019-10-27 21:59:13 -05:00
Michael Kuhn
82428133d6
mariadb: Fix openssl dependencies ( #13443 )
2019-10-27 21:55:06 -05:00
Michael Kuhn
929ec39a63
mariadb-c-client: Add 3.1.4 ( #13447 )
2019-10-27 21:54:04 -05:00
Sinan
57f040753d
new package: ecos ( #13453 )
2019-10-27 21:53:38 -05:00
Adam J. Stewart
59a6226f74
Update PyTorch variable name ( #13461 )
2019-10-27 19:21:06 -05:00
Axel Huebl
c107b7531c
MPICH: Fix Slurm Find Issue ( #13263 )
...
Set include and library path to slurm explicitly.
2019-10-26 22:03:39 -04:00
Adam J. Stewart
d68b554cd3
Add latest version of py-fiscalyear ( #13451 )
2019-10-26 11:06:37 -05:00
Adam J. Stewart
5582de837e
Add py-twine package ( #13449 )
2019-10-25 21:27:44 -05:00
Adam J. Stewart
85597be4d7
Add py-pkginfo package ( #13448 )
2019-10-25 21:27:29 -05:00
Adam J. Stewart
d6735aa5cd
Add latest version of py-tqdm ( #13446 )
2019-10-25 21:27:12 -05:00
Adam J. Stewart
46ae845b6b
Add latest version of py-requests-toolbelt ( #13445 )
2019-10-25 21:26:48 -05:00
Adam J. Stewart
3dda714477
Add latest version of py-readme-renderer ( #13444 )
2019-10-25 21:26:29 -05:00
Glenn Johnson
c566a610c9
New package: gpu-burn ( #13108 )
2019-10-25 17:14:52 -07:00
Andreas Baumbach
24ccc11242
py-nbformat package: add version 4.4.0 ( #13421 )
2019-10-25 15:42:49 -07:00
Andreas Baumbach
32c0ef5ebd
New package: py-defusedxml ( #13419 )
2019-10-25 15:40:59 -07:00
Sinan
ca917cfccc
New package: OSQP ( #13432 )
2019-10-25 15:36:28 -07:00
Hans Pabst
92e2758837
LIBXSMM package: add version 1.14 ( #13436 )
2019-10-25 15:34:54 -07:00
Michael Kuhn
d4ce124b65
lmdb package: add version 0.9.24 ( #13437 )
2019-10-25 15:34:13 -07:00
Michael Kuhn
2f752d4880
sqlite package: add version 3.30.1 ( #13438 )
2019-10-25 15:33:47 -07:00
Justin S
1b6ba93668
py-gensim: new package at 3.8.0 ( #13136 )
...
* py-gensim: new package at 3.8.0
* py-gensim: add 3.8.1
2019-10-25 16:43:54 -05:00
Greg Becker
a6ea0bbbae
Views: fix python in views when python prefix is under a symlink ( #12575 )
...
* Fix python in views when python prefix is under a symlink
* Add todo for future generalization
2019-10-24 16:27:21 -05:00
Adam J. Stewart
0f22e528f3
Add latest version of NetCDF libraries ( #13416 )
2019-10-24 14:21:12 -06:00
Mikael Simberg
83016e96fd
Extend HPX package ( #13219 )
...
* Add master branch as version to HPX package
* Remove C++98 option from HPX package
* Add option to turn off examples in HPX package
* Add MPI variant to HPX package
2019-10-24 14:19:25 -06:00
Jannek Squar
5004b20f5c
New package: py-cdsapi ( #13363 )
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* New package py-cdsapi to access Climate Data Store for downloading climate and weather reanalysis data
* Improvements
2019-10-24 13:30:21 -05:00
Geoffrey Oxberry
2dd83523e2
mfem: add version 4.0 (without cuda) ( #11880 )
...
* mfem: add version 4.0.0 (without cuda, raja, etc)
* mfem@4.0.0: add occa variant
* mfem@4.0.0: add raja variant
* Update package.py
* Update package.py
* Update package.py
* Update package.py
* Update package.py
2019-10-24 13:08:51 -05:00
Eric Martin
44485c56b6
blast-legacy: fix build issues ( #13370 )
2019-10-23 23:16:22 -05:00
Eric Martin
944ffe44a7
subread: add version 2.0.0 ( #13368 )
2019-10-23 23:07:11 -05:00
Cody Balos
177f661bb3
sundials: add version 5.0.0 and new variant ( #13375 )
...
* sundials: add version 5.0.0 and new variant
plus some cleanup
* sundiaks: fix formatting
* sundials: fix dependencies
2019-10-23 23:06:20 -05:00
Eric Martin
d0d0456fa7
vt: add version 0.5772 ( #13367 )
2019-10-23 23:05:27 -05:00
Greg Becker
8c7a3e55dd
add spack dev-build
command; deprecate spack diy
( #13374 )
...
Rename the `spack diy` command to `spack dev-build` to make the use case clearer.
The `spack diy` command has some useful functionality for developers using Spack to build their dependencies and configure/build/install the code they are developing. Developers do not notice it, partly because of the obscure name.
The `spack dev-build` command has a `-u/--until PHASE` option to stop after a given phase of the build. This can be used to configure your project, run cmake on your project, or similarly stop after any stage of the build the user wants. These options are analogous to the existing `spack configure` and `spack build` commands, but for developer builds.
To unify the syntax, we have deprecated the `spack configure` and `spack build` commands, and added a `-u/--until PHASE` option to the `spack install` command as well.
The functionality in `spack dev-build` (specifically `spack dev-build -u cmake`) may be able to supersede the `spack setup` command, but this PR does not deprecate that command as that will require slightly more thought.
2019-10-23 17:08:15 -07:00
Michael Kuhn
bd7265ed52
bison: Fix parallel build ( #13402 )
2019-10-23 16:49:18 -05:00
Michael Kuhn
420346b275
mysql: Use correct python command ( #13393 )
...
* mysql: Use correct python command
python~pythoncmd does not provide a python symlink for python3, so make
sure we pick the right command.
* mysql: Adapt to build env changes
2019-10-23 14:15:30 -05:00
Sarah Osborn
b7536eb332
hypre: Add new variants to expose existing features. ( #13373 )
...
* hypre: Add new variants to expost existing features.
* hypre: Add new variants to expose existing features.
* hypre: Shorten description line.
* hypre: Add an explicit else clause to disable some features.
2019-10-23 14:13:21 -05:00
Adam J. Stewart
33499681a4
Add latest version of py-pbr ( #13380 )
2019-10-23 10:14:04 -05:00
Adam J. Stewart
df3b23334a
py-argparse: remove Python dependency version ( #13378 )
2019-10-23 10:13:39 -05:00
Adam J. Stewart
bc6c76baf9
py-traceback2: fix dependencies ( #13381 )
2019-10-23 10:13:11 -05:00
Michael Kuhn
b75f506a1a
bison: Fix build ( #13231 )
...
It seems that 3.4.2 includes a change that is supposed to fix parallel
builds (https://lists.gnu.org/archive/html/bug-bison/2019-08/msg00000.html ).
Instead, it actually breaks it for me (with -j48) with errors such as:
```
mv: cannot stat 'examples/c/reccalc/scan.stamp.tmp': No such file or directory
Makefile:9323: recipe for target 'examples/c/reccalc/scan.stamp' failed
```
2019-10-23 10:07:22 -05:00
Adam J. Stewart
4bd0a9b286
py-linecache2: pbr is only a build dependency ( #13379 )
2019-10-23 09:38:05 -05:00
Adam J. Stewart
baeec6a94e
py-unittest2: fix dependencies ( #13382 )
2019-10-23 09:37:03 -05:00
Adam J. Stewart
79c28331d2
Add py-codecov package ( #13383 )
2019-10-23 09:36:45 -05:00
t-karatsu
6f41987500
bpp-phyl: Clarify namespace of 'isnan' function. ( #13386 )
2019-10-23 09:36:01 -05:00
Michael Kuhn
64694dfaf8
magics: Use correct python path ( #13394 )
...
python~pythoncmd does not provide a python symlink for python3, so make
sure we pick the right command.
2019-10-23 09:33:42 -05:00
Michael Kuhn
466d07558d
bracken: Use correct python command ( #13395 )
...
python~pythoncmd does not provide a python symlink for python3, so make
sure we pick the right command.
2019-10-23 09:33:09 -05:00
carlabguillen
44f859849b
Ace package. Initial commit ( #13211 )
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* Ace package. Initial commit
* Correcting header now with licence.
* Using sha256
* Making requested changes:removing import line, urls and checksums in one line, and making it an MakefilePackage.
* Removing extra line
2019-10-23 09:31:06 -05:00
Michael Kuhn
464ce2795a
glib: Use correct python command ( #13392 )
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python~pythoncmd does not provide a python symlink for python3, so make
sure we pick the right command.
2019-10-23 09:30:46 -05:00
Satish Balay
25d63aa44c
petsc: add version 3.12.1 [and variant: batch] ( #13390 )
...
* petsc: add version 3.12.1 [and variant: batch]
* fix test_prs_update_old_api errors
2019-10-23 09:29:28 -05:00
Greg Becker
95a48b27ec
env activation: use package defined env setup methods ( #13249 )
...
This PR ensures that environment activation sets all environment variables set by the equivalent `module load` operations, except that the spec prefixes are "rebased" to the view associated with the environment.
Currently, Spack blindly adds paths relative to the environment view root to the user environment on activation. Issue #12731 points out ways in which this behavior is insufficient.
This PR changes that behavior to use the `setup_run_environment` logic for each package to augment the prefix inspections (as in Spack's modulefile generation logic) to ensure that all necessary variables are set to make use of the packages in the environment.
See #12731 for details on the previous problems in behavior.
This PR also updates the `ViewDescriptor` object in `spack.environment` to have a `__contains__` method. This allows for checks like `if spec in self.default_view`. The `__contains__` operator for `ViewDescriptor` objects checks whether the spec satisfies the filters of the View descriptor, not whether the spec is already linked into the underlying `FilesystemView` object.
2019-10-22 23:27:40 -07:00
Benjamin Fovet
7338730528
gmsh: add version 4.4.1 ( #13366 )
2019-10-22 18:18:19 -05:00
Frédéric Simonis
ab5135db1c
Boost package: Fix iostream autodetect libraries ( #12440 )
...
Boost iostream autodetects the compression libraries libzstd and
liblzma outside of the Spack environment.
This commit disables mentioned libraries. In the future if the
Spack zstd/lzma packages were added as dependencies of the Spack
Boost package, additional work could be done to build Boost with
the Spack-built versions of these libraries.
2019-10-22 14:25:03 -07:00
Axel Huebl
0f931cfc87
ADIOS2: Document endian_reverse variant ( #13226 )
...
Update the documentation of the `endian_reverse` variant in ADIOS2.
The short description caused some confusion (for me) :-)
2019-10-22 11:06:06 -05:00
Ruben Di Battista
49291d5a40
git-lfs: Add new version ( #13356 )
...
PS: The old versions do not work: it's likely that they changed git
history on submodules
2019-10-22 10:45:45 -05:00
Adam J. Stewart
526ee113ea
Default to Python 3.7 ( #10319 )
...
* Default to Python 3
* Fix build with Intel compilers
2019-10-22 10:22:32 -05:00
Adam J. Stewart
48e8029fb1
Add latest version of py-scikit-learn ( #13295 )
...
* Add latest version of py-scikit-learn
* setup_environment -> setup_build_environment
2019-10-22 09:16:58 -05:00
Adam J. Stewart
09070b0c9b
Add latest version of npth ( #13353 )
2019-10-22 09:16:33 -05:00
Adam J. Stewart
2de807d4cb
Add latest version of py-macs2 ( #13358 )
2019-10-22 09:16:07 -05:00
Adam J. Stewart
e0c310bfd3
Add latest version of py-sphinxcontrib-programoutput ( #13359 )
2019-10-22 09:15:39 -05:00
Adam J. Stewart
809733c7e6
Restrict parallel build of py-astropy to Python 3 ( #13360 )
2019-10-22 09:15:11 -05:00
Adam J. Stewart
6cb972a9d2
Add dependency version constraint to libgcrypt ( #13351 )
2019-10-22 00:43:44 -05:00
Adam J. Stewart
2aa51697c5
Fix configure arg to libassuan ( #13350 )
2019-10-22 00:43:29 -05:00
Adam J. Stewart
598274a278
Fix configure arg to libksba ( #13352 )
2019-10-22 00:43:11 -05:00
Adam J. Stewart
fb219cd91c
Add latest version of gnupg ( #13349 )
2019-10-22 00:42:56 -05:00
Adam J. Stewart
326db657da
Add latest version of patchelf ( #13348 )
2019-10-22 00:42:40 -05:00
Adam J. Stewart
5e6dc7ab4b
Add latest version of zstd ( #13340 )
...
* Add latest version of zstd
* setup_environment -> setup_build_environment
2019-10-21 21:45:48 -05:00
Toyohisa Kameyama
98c0d59a0c
sniffles: fix zlib header lookup directory. ( #13063 )
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* sniffles: fix zlib header lookup directory.
* use bamtools and zlib to spack installed package.
* remove unneeded patch.
2019-10-21 18:38:05 -05:00
noguchi-k
7b62b64b03
elsi:add CMAKE Fortran MODDIR FLAG for Fujitsu compiler ( #13244 )
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* add CMAKE Fortran MODDIR FLAG for Fujitsu compiler
* elsi:remove extra fix
2019-10-21 18:28:38 -05:00
t-karatsu
0e3e1836ff
arpack-ng: Fixed error that is not compatible with isnan. ( #13246 )
2019-10-21 18:27:39 -05:00
t-karatsu
26141ad489
bpp-core: Clarify 'isnan' function's namespace. ( #13260 )
2019-10-21 18:24:10 -05:00
Michael Kuhn
edf56d8ac4
qt: Fix build for newer versions ( #13262 )
...
For some reason, newer versions of qt fail to build because they cannot
find certain system libraries such as libatomic and libdl.
Leaving the qmake compiler set to gcc seems to fix the problem.
Fixes #13221
2019-10-21 18:23:03 -05:00
健美猞猁
26687988eb
New package: Fl ( #12877 )
2019-10-21 12:04:00 -07:00
Adam J. Stewart
4ab63c17d5
Fix Python 3.8 build on macOS ( #13338 )
2019-10-21 11:21:47 -05:00
Adam J. Stewart
4d99663ef9
Add latest version of py-cffi ( #13322 )
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* Add latest version of py-cffi
* setup_environment -> setup_build_environment
2019-10-21 11:19:48 -05:00
Adam J. Stewart
038f7b1b66
Add latest version of py-numpy ( #13307 )
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* Add latest version of py-numpy
* setup_environment -> setup_build_environment
2019-10-21 11:19:05 -05:00
Adam J. Stewart
72177b6e97
Add latest version of py-tables ( #13291 )
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* Add latest version of py-tables
* setup_environment -> setup_build_environment
2019-10-21 11:17:52 -05:00
Adam J. Stewart
5090071693
Add latest version of py-torch ( #13290 )
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* Add latest version of py-torch
* setup_environment -> setup_build_environment
2019-10-21 11:17:15 -05:00
Adam J. Stewart
f2d91f7e3c
Use specific version of googletest for uriparser ( #13339 )
2019-10-20 19:08:23 -05:00
Adam J. Stewart
01e64886ac
Tut cannot be built with Python 3.7+ ( #13341 )
2019-10-20 19:08:04 -05:00
Adam J. Stewart
7f2aacfffc
Add latest version of proj ( #13337 )
2019-10-20 17:56:37 -05:00
Adam J. Stewart
030b2f8657
Add missing zlib dependency to openjpeg ( #13336 )
2019-10-20 17:06:43 -05:00
Adam J. Stewart
0cfc88c7d7
openblas: http -> https ( #13335 )
2019-10-20 17:06:30 -05:00
Adam J. Stewart
785d5d9ca3
mapserver: http -> https ( #13334 )
2019-10-20 16:31:55 -05:00
Adam J. Stewart
4789ac956c
liblas: http -> https ( #13331 )
2019-10-20 15:51:35 -05:00
Adam J. Stewart
529d1246f6
libtiff: http -> https ( #13332 )
2019-10-20 15:51:23 -05:00
Adam J. Stewart
b56e46ece8
libgeotiff: http -> https ( #13330 )
2019-10-20 15:51:08 -05:00
Adam J. Stewart
f1e595cb61
Add latest version of libyaml ( #13333 )
2019-10-20 15:50:48 -05:00
Adam J. Stewart
04e999162d
Add latest version of libgcrypt ( #13329 )
2019-10-20 14:45:00 -05:00
Adam J. Stewart
73c5a9c736
Add latest version of googletest ( #13328 )
2019-10-20 14:44:43 -05:00
Adam J. Stewart
1673dc5aeb
GEOS: http -> https ( #13327 )
2019-10-20 14:44:28 -05:00
Adam J. Stewart
c767444f88
Add missing test dependency to py-alabaster ( #13325 )
2019-10-20 14:44:14 -05:00
Adam J. Stewart
a602ed873d
Add latest version of py-typing ( #13287 )
2019-10-20 13:18:02 -05:00
Adam J. Stewart
d462749b59
Add missing dependencies to py-apipkg ( #13324 )
2019-10-20 13:17:44 -05:00
Adam J. Stewart
32879df9d0
Add latest version of py-babel ( #13323 )
2019-10-20 13:17:28 -05:00
Adam J. Stewart
ea90d2b88a
Add latest version of py-chardet ( #13321 )
2019-10-20 11:44:12 -05:00
Adam J. Stewart
d2744a072b
Add latest version of py-click ( #13320 )
2019-10-20 11:43:56 -05:00
Adam J. Stewart
41126d457f
Add latest version of py-execnet ( #13317 )
2019-10-20 11:21:59 -05:00
Adam J. Stewart
1007a0f7e5
Add latest version of py-decorator ( #13318 )
2019-10-20 11:21:46 -05:00
Adam J. Stewart
47831a95e1
Add latest version of py-coverage ( #13319 )
2019-10-20 11:21:32 -05:00
Adam J. Stewart
b421c97110
Add latest version of py-sphinxcontrib-websupport ( #13292 )
2019-10-20 11:21:03 -05:00
Adam J. Stewart
21d14a19f6
Add latest version of py-sphinx ( #13293 )
2019-10-20 11:20:46 -05:00
Adam J. Stewart
2268dd9e8f
Add latest version of py-snowballstemmer ( #13294 )
2019-10-20 11:20:21 -05:00