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Author SHA1 Message Date
Adam J. Stewart
466f7fd996
GMT: add v6.1.0 (#17384) 2020-07-05 21:06:05 -05:00
darmac
58cfe4e078
acl: fix depends error (#17341) 2020-07-05 15:28:29 -05:00
darmac
00f7577273
brpc: fix depends issue (#17347) 2020-07-05 15:27:49 -05:00
Wouter Deconinck
4e6d189a94
[opencascade] depends_on freetype, tcl, tk, gl (#17357) 
* [opencascade] depends_on freetype, tcl, tk, gl

* [opencascade] new version 7.4.0p1 and url_for_version
 2020-07-05 15:25:38 -05:00
iarspider
9abadd4985
New version of LHAPDF: 6.3.0 (#17367) 2020-07-05 15:23:03 -05:00
figroc
66d4bc3f3c
protobuf: add versions (#17381) 2020-07-05 15:22:31 -05:00
yellowhat
52cafe6c96
amdblis bump to 2.2. (#17369) 2020-07-05 15:22:11 -05:00
g-mathias
8d5aa46765
package Amber: amber tools 20 (#17374) 
* package amber: added amber_tools 20 hash; added minor version for amber_tools

* fix flake8 issues

Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
 2020-07-05 15:17:38 -05:00
Gilles Gouaillardet
e5ec89ad5b
openblas: fix fj compiler support in 0.3.10 (#17376) 
The latest 0.3.10 version openblas changed how Fortran libraries
are detected, and this broke Fujitsu compiler support.

This (new) openblas patch addresses that issue.
 2020-07-05 15:14:36 -05:00
Timo Heister
7bba9cd2a5
update aspect to 2.2.0 (#17379) 2020-07-05 15:13:22 -05:00
Adam J. Stewart
cce629e791
SciPy: add v1.5.1 (#17380) 2020-07-05 14:58:26 -05:00
TZ
bb15addad5
inel-mpi: fix for wrong structure name instroduced in ea8a0be4 (#17382) 
it's    mpi_compiler_wrappers
and not mpi_compiler._wrappers

fixes 2nd part of #17371
 2020-07-05 11:10:28 -05:00
Adam J. Stewart
e9e3e88f63
Fix Intel MPI super invocation, again (#17378) 2020-07-05 11:09:24 -05:00
fcannini
c797a0611c
dtfbplus: New package. (#15191) 
* dtfbplus: New package.

* dftbplus: Addresses @adamjstewart's comments on PR #15191

* dftbplus: Fixes format() calls that slipped in previous commit.

* dftbplus: Appease flake8.

* dftbplus: Change 'url' and misc. fixes.

* Add a resource to do the job of './utils/get_opt_externals'
 2020-07-04 08:27:32 -05:00
Shahzeb Siddiqui
04f3000646
Pipelines doc: fixed two broken links (#17355) 2020-07-03 12:29:45 +02:00
Amjad Kotobi
f3eba3c482
py-python-swiftclient: added v3.10.0 (#17352) 2020-07-03 12:25:54 +02:00
g-mathias
02fa7b680f
elpa: added v2019.11.001 and v2020.05.001 (#17368) 
Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
 2020-07-03 11:52:02 +02:00
Paul R. C. Kent
8fcd917e51
libelf: added extra url (#17358) 2020-07-03 11:49:58 +02:00
g-mathias
9c85d87b90
jube: added v2.3.0 (#17366) 
Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
 2020-07-03 10:13:37 +02:00
yellowhat
b45fc97564
Package request: HPCG (#17350) 
* use patch from upstream

Co-authored-by: Michael Kuhn <michael.kuhn@informatik.uni-hamburg.de>
 2020-07-03 10:05:24 +02:00
ketsubouchi
986f68f7ed
blktrace: use Spack compiler wrappers (#17365) 2020-07-02 23:39:04 -07:00
ketsubouchi
2cd9e1eb62
blat: use SPACK_CC (#17364) 2020-07-02 23:38:23 -07:00
darmac
61804f201a
glusterfs: add pkgconfig dependency (#17343) 2020-07-02 23:35:38 -07:00
g-mathias
cf104b0f10
jmol: add version 14.31.0 (#17351) 
Also:

* Add url_for_version function
* Add Java to PATH for run environment
* Update `install` method to handle old and new version

Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
 2020-07-02 23:34:00 -07:00
Kelly (KT) Thompson
17106a131d
Random123: add versions 1.10, 1.13.2 (#17361) 2020-07-02 23:25:53 -07:00
Christoph Junghans
cc0dda95c4 quicksilver: add v1.0 2020-07-02 23:24:44 -07:00
takanori-ihara
7679e20e83
py-tensorflow: Fix for tensorflow issue #40688 (#17324) 
* py-tensorflow: Fix for #40688

* py-tensorflow:  Fix for tensorflow issue #40688
 2020-07-02 21:49:29 -05:00
Michio Ogawa
4349c091e7
FrontISTR: add version 5.1 (#17349) 2020-07-02 15:34:25 -07:00
darmac
ff60f51a7a
keepalived: openssl is a link and build dependency (#17346) 2020-07-02 15:13:24 -07:00
Amjad Kotobi
06da1f195c
openmpi: add singularity variant (#17288) 2020-07-02 15:10:06 -07:00
iarspider
3d98ad3f4c
New packages: heputils and mcutils (#17330) 
heputils is a (conditional) dependency of mcutils
 2020-07-02 15:05:20 -07:00
Harmen Stoppels
f1bb8999ab
cpprestsdk: add version 2.10.16 (#17331) 
Also

* Patch is only needed for 2.9.1
* Add openssl dependency
* Build with -DWERROR:BOOL=Off
 2020-07-02 15:02:12 -07:00
Sinan
1e75dde7b2
mapnik: add version 3.0.23, update boost dependency (#17338) 2020-07-02 14:56:36 -07:00
manifest
f780839b87
examl + (#17265) 
* examl +

* examl style fix

* examl flake8 fix

* Update var/spack/repos/builtin/packages/examl/package.py

using `working_dir`

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-07-02 09:43:47 -05:00
Andrew Gaspar
204f15b4c1
py-fortran-language-server: new package at v1.11.1 (#17318) 
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-07-02 10:22:01 +02:00
Michael Kuhn
a4fff39d7e
py-shroud: added v0.12.1 (#17332) 
py-setuptools is also needed at runtime, otherwise we get errors:
```
ModuleNotFoundError: No module named 'pkg_resources'
```
 2020-07-02 10:14:57 +02:00
Michael Kuhn
10016a34e0
autotools: Fix config.guess detection, take two (#17333) 
The previous fix from #17149 contained a thinko that produced errors for
packages that overwrite configure_directory.
 2020-07-02 00:45:41 -07:00
Sinan
e133b44da6
py-opt-einsum: added v3.2.1, v3.2.0 and v2.3.2 (#17339) 
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
 2020-07-02 09:14:39 +02:00
Paul R. C. Kent
5732d8de50
py-sphinxcontrib-bibtex: added v1.0.0 (#17336) 2020-07-02 08:32:26 +02:00
mic84
509b3c3016
amrex: added v20.07 (#17337) 
Also added support for hdf5, petsc and hypre
 2020-07-02 08:28:57 +02:00
ketsubouchi
8a9fa9bd18
biobloom: use the correct standard library for Fujitsu compilers (#17327) 2020-07-02 08:11:56 +02:00
Massimiliano Culpo
a5eabfad91
Moved flake8, shell and documentation tests to Github Action (#17328) 
* Move flake8 tests on Github Actions

* Move shell test to Github Actions

* Moved documentation build to Github Action

* Don't run coverage on Python 2.6

Since we get connection errors consistently on Travis
when trying to upload coverage results for Python 2.6,
avoid computing coverage entirely to speed-up tests.
 2020-07-01 11:58:53 -05:00
Adam J. Stewart
6a77f1ff45
Fix hashlib function capitalization (#17323) 2020-07-01 09:46:20 -05:00
Glenn Johnson
60283775b3
Documentation update for container example (#17321) 
This updates the documentation to reflect #17316.
 2020-07-01 08:40:36 +02:00
Greg Becker
4433e4de2d
Use apple-clang for MacOS nightly tests (#17320) 2020-07-01 08:21:08 +02:00
darmac
aaf6f80d4c
hbase: refine url , java and version (#17306) 
* hbase: refine url , java and version

* Update var/spack/repos/builtin/packages/hbase/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-06-30 22:22:32 -05:00
Gregory Becker
59fb789290 Merge branch 'releases/v0.15' into develop 2020-06-30 19:19:12 -05:00
Gregory Becker
d4bf70d988 changelog for v0.15.0 2020-06-30 18:21:32 -05:00
Gregory Becker
49aebb44b1 bump version number 2020-06-30 18:21:32 -05:00
Glenn Johnson
37d7b5b199
Activate environment in container file (#17316) 
* Activate environment in container file

This PR will ensure that the container recipes will build the spack
environment by first activating the environment.

* Deactivate environment before environment collection

For Singularity, the environment must be deactivated before running the
command to collect the environment variables. This is because the
environment collection uses `spack env activate`.
 2020-06-30 18:17:58 -05:00