Commit graph

6683 commits

Author SHA1 Message Date
Matthew LeGendre
79c20a7edd Merge pull request #2071 from mplegendre/bug_concretize_external_virtuals
Bug concretize external virtuals
2016-10-21 13:47:25 -07:00
alalazo
715e029361 spack info : added phases 2016-10-21 22:44:41 +02:00
Matthew LeGendre
5ff08386af Remove unnecessary blackslash for flake8 2016-10-21 13:17:23 -07:00
alalazo
fd2b72fd0f qa : flake8 issues 2016-10-21 22:15:29 +02:00
alalazo
04821c7be8 spack create : now creates packages that are derived from AutotoolsPackage and CMakePackage 2016-10-21 22:12:21 +02:00
Matthew LeGendre
73b46a92bc Fix concretize bug where provider sort couldn't handle version ranges 2016-10-21 11:59:41 -07:00
Matthew LeGendre
9f36ae4e20 Extend concretization test to excercise bug in concretize's provider sorting 2016-10-21 11:57:57 -07:00
Adam J. Stewart
52158d9316 Add new Version property to handle joined version numbers (#2062)
* Add new version property to handle joined version numbers

* Add unit test for new joined property

* Add documentation on version.up_to() and version.joined
2016-10-21 07:49:36 -07:00
Adam J. Stewart
c513fd72fb Add latest version of Armadillo (#2061) 2016-10-21 07:39:48 -07:00
Massimiliano Culpo
aa86432ec6 patch directive : fixed retrieval from urls ( fixes #1584 ) (#2039)
* patch directive : fixed retrieval from urls fixes #1584

 - add support for 'gz' archives
 - fixed bugs with URL patches
 - updated nwchem

* patch directive : added checksum to UrlPatch

 - refactored classes in patch.py
 - updated nwchem

* patch directive : added caching
2016-10-21 07:32:52 -07:00
alalazo
2251428f0a CMakePackage : changed list() to [] 2016-10-21 13:01:55 +02:00
alalazo
5ce3071143 do_install : removed install_self from the list of arguments (leftover after rebasing #1956) 2016-10-21 12:51:38 +02:00
alalazo
213e3f0860 Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases_rebase
Conflicts:
	lib/spack/spack/cmd/install.py
	lib/spack/spack/cmd/setup.py
2016-10-21 12:38:43 +02:00
Matthew LeGendre
8de143a994 Fixes needed to build gcc on Linux/ppc64le (#2057)
* Fixes needed to build gcc on Linux/ppc64le

* flake8 fix.
2016-10-19 23:29:59 -07:00
Todd Gamblin
4b5281bfe6 Update mail map. So many email aliases. 2016-10-19 22:47:39 -07:00
George Hartzell
027632cbac Fix cdd package definition, dotted is a property (#2054)
Things that accessed the cdd package, such as `spack info cdd run
tripped over a buglet in the *cdd* package, causing them to exit with
something like this:

```
Caused by:
TypeError: 'str' object is not callable
  File "/rss/spack/lib/spack/spack/repository.py", line 584, in get
    self._instances[key] = package_class(copy)
  File "/rss/spack/lib/spack/spack/package.py", line 398, in __init__
    f = fs.for_package_version(self, self.version)
  File "/rss/spack/lib/spack/spack/fetch_strategy.py", line 852, in for_package_version
    attrs['url'] = pkg.url_for_version(version)
  File "/rss/spack/var/spack/repos/builtin/packages/cdd/package.py", line 40, in url_for_version
    str(version.dotted()).replace('.', ''))
```

@tgamblin pointed out that `dotted` is a property, not a functin call
and that the parentheses are therefor inappropriate.

This deletes the parentheses.  `spack info cdd` now works for me.
2016-10-19 12:28:26 -07:00
George Hartzell
dbbef6ba23 Add package for htop (#2051)
Add package for htop, an interactive text-mode process viewer for
Unix systems.  Think top, with pretty colors and dyanmic bar graphs.

More info [here](https://github.com/hishamhm/htop).
2016-10-19 10:33:49 -07:00
scheibelp
8111a4bb9d Don't cache truncated dag hash for spec (#2048)
If Spec.dag_hash was called for the first time with a 'length'
specified, the cached hash was truncated. This ensures that the
full hash is cached.
2016-10-18 22:34:46 -07:00
Massimiliano Culpo
0a3cc5e8e3 Package.do_install : removed install_self from arguments (#1956)
* Removes the extra argument from Package.do_install while maintaining the changes in behavior pulled in #1603

* install : removed -i and -d shorthands (breaks backward compatibility)

* Change ':' to ','
2016-10-18 14:25:07 -07:00
Denis Davydov
0e59ade030 petsc: minor fixes... (#2036)
* petsc: require boost for :3.5 only

* petsc: turn off download for c2html and hwloc
2016-10-18 08:09:18 -07:00
Eric
306eea5e59 Support for bazel (#2023)
* Add package bazel

* Add support for bazel-based builds
2016-10-18 07:46:42 -07:00
Denis Davydov
4c2af4f888 superlu-dist: add 5.1.0 and 5.1.1 (#2038) 2016-10-18 07:45:48 -07:00
Denis Davydov
dd28f5b5eb mumps: add 5.0.2 (#2041) 2016-10-18 07:38:30 -07:00
Denis Davydov
5f20c43315 hypre: add 2.11.1 (#2040) 2016-10-18 07:38:15 -07:00
Jim Galarowicz
87adcfeea8 Update the Krell Institute products to use the latest features of spa… (#1984)
* Update the krell institute products to use the latest features of spack for building on cluster platforms.

* Address travis error messages and resubmit the pull request.

* Update the contents of openspeedshop package.py so it passes the flake8 tests.

* Fix flake8 error-whitespack issue in mrnet package.py file.

* Add updates based on spack reviewer feedback.

* More fixes based on comments from reviewers.  Switch using extend to using append, remove additional setting of PATH and LD_LIBRARY_PATH that should not be required due to RPATH.

* More review related changes.  Update MPIOption.append lines and take out xercesc references.

* Create a base options function for common openspeedshop base cmake options to reduce redundencies.
2016-10-17 01:18:30 -07:00
Pramod Kumbhar
b5e20018b5 fix download url for paraver (#2033)
* fix download url for paraver

* added note to remove older version
2016-10-17 01:17:01 -07:00
Adam J. Stewart
d891143a08 Ignore GPG/PGP signatures/checksums when finding available downloads (#2028)
* Ignore GPG/PGP signatures/checksums when finding available downloads

* Remove duplicated basename
2016-10-16 14:46:29 -07:00
Todd Gamblin
193f68083f Platform-specific config scopes (#2030)
* Add platform-specific configuration scopes.

* Update `spack config` to use the new scope arguments.
2016-10-15 17:00:11 -07:00
Pramod Kumbhar
e93c9060f5 fix sqlite download url (#2031) 2016-10-15 16:31:23 -07:00
Massimiliano Culpo
8d5961ecaf spack purge : updated documentation fixes #1938 (#2025) 2016-10-15 15:51:49 -07:00
Massimiliano Culpo
9726574846 travis : unit tests will run with and without libyaml (#2024)
* travis : unit tests will run with and without libyaml

* travis : fixed package that are installed
2016-10-15 14:21:50 -07:00
Elizabeth Fischer
3dbde09747 Workaround for illegal package merging in py-matplotlib/py-basemap (#1964)
* Workaround for illegal package merging in py-matplotlib/py-basemap

# Conflicts:
#	var/spack/repos/builtin/packages/py-basemap/package.py

* flake8

* flake8

* Be conservative: only apply the namespace package fix for Python >= 3.5.2

* flake8

* Bug fix
2016-10-14 16:09:54 -07:00
Adam J. Stewart
fbe9142b7e Fix list_url for fish shell (#2022) 2016-10-14 12:46:59 -07:00
John Finigan
4be224238e py-macs2: New package (#2011)
* py-macs2: New package

* py-macs2: add py-numpy@1.6: dependency
2016-10-14 12:00:56 -07:00
Kelly Thompson
e359a7ca59 Add missing 'import os'. (#2012) 2016-10-14 12:00:43 -07:00
Denis Davydov
48f23aadbe dealii: remove extra test which are now mostly integrated in make test (#2013) 2016-10-14 09:49:31 -07:00
Adam J. Stewart
78d3c7e2a2 Major updates to Contribution Guide (#1968)
* Major updates to Contribution Guide

* Grammar changes

* Fix missing/extra backticks

* Rewording, links, and tips added
2016-10-14 09:16:13 -07:00
Denis Davydov
0d89e5e32b Package/petsc slepc new versions (#2019)
* petsc: add 3.7.4

* slepc: add 3.7.3
2016-10-14 08:25:22 -07:00
Todd Gamblin
d861a52ebe Use cYAML if it is available in Python. (#2010) 2016-10-12 18:25:18 -07:00
Elizabeth Fischer
b27f4e3aeb py-matplotlib: Add variants for optional dependencies. (#2008) 2016-10-12 14:55:38 -07:00
Elizabeth Fischer
67ef6df4db Made optional CGAL dependencies optional. (#2006)
* Made optional CGAL dependencies optional.

* cgal: Added note explaining that the CORE library is not the same as core CGAL functionality.

* Bug fix and flake8

* flake8
2016-10-12 13:02:06 -07:00
Ben Boeckel
b369be65d7 Mock up Xcode devdir to make Qt5 work on Mac OS X (#1832)
* build_environment: allow compilers to set up an environment

* clang: mock up a toolchain directory for xcode

Some projects ignore CC and CXX flags and instead use xcode to find the
toolchain. Clang on Apple should set up the environment properly.
Arguably, every compiler could do this on Apple, but let's see how this
works out just for AppleClang for now.

The Documentation directory is ~1.7G and the excluded platforms add up
to about 7G. Ignoring swift saves another 500M. The resulting Xcode.app
copy is in the 2G range.

* compiler: set member variables early

This is required so that later methods can query things such as the
version of the compiler.

* compiler: support finding the real path of the compiler

On Apple, the /usr/bin compilers are actually wrapping tools themselves
which query xcrun for the currently selected Xcode installation. Pierce
this veil and get the real, full path the to underlying compilers
instead.

* icu4c: install with rpath

On macOS, icu installs with a library ID of the library name. Enabling
rpath makes its ID its full installed path which lets Qt5 link against
it successfully.

* qt: no -no-gtkstyle flag on Qt5 on macOS
2016-10-12 09:58:12 -07:00
Massimiliano Culpo
1925db5c77 spack list : updated documentation (#2004)
* spack list : updated documentation

* spack list : removed space before ':'
2016-10-12 09:43:28 -07:00
Glenn Johnson
5b070418e7 Documentation for modules configuration options (#1685)
This PR add documentation for the `suffixes` and `hash_length` options
for modules.yaml.

This resolves #1416.
2016-10-11 23:14:42 -07:00
Todd Gamblin
488e1bab2c Make insecure option work with curl AND git. (#1786) 2016-10-11 23:13:40 -07:00
Elizabeth Fischer
a6f85f51d0 patchelf: Add version (#1540)
* patchelf: Add version

* flake8

* Removed unnecessary url_for_version() function.

* Restored old URL
2016-10-11 23:11:25 -07:00
Denis Davydov
025b914079 oce: fix for Sierra (#1934) 2016-10-11 23:10:51 -07:00
Massimiliano Culpo
eb17895630 environment modifications : permit to pass parameters along with file to be sourced (#1626) 2016-10-11 22:55:14 -07:00
gmatteo
949766d92e Abinit: Added package(s) (#1995)
* First version of Abinit package

* Ignore *.swp files

* Add libxc, etsf_io packages

* AtomPaw package

* Make Abinit depend on mpi@2: and external version of libxc, netcdf, hdf5, etsf_io

* etsf_io: install Fortran modules in prefix.include

* Remove etsf_io from abinit requirements

* Add libxc2.2.1 (required by Abinit and atompaw)

* Cleanup

* Run make check

* Cleanup

* Use ld_flags instead of hard-coded libs, fix pep8, add copyright

* Put scalapack before lapackblas
2016-10-11 15:22:46 -07:00
Joseph Ciurej
37d125b890 Update Package : ExodusII (#1504)
* Added support for the 'maxdims' and 'maxvars' flags for 'NetCDF'.

* Added the '+mpi' variant and improved dependencies for 'exodusii'.
Improved the 'exodusii' package so that it's less reliant on patches.

* Added better type checking to variant values in the 'netcdf' package.

* Corrected the required CMake version for the 'exodusii' package.

* Fixed the dependencies of the '+mpi' variant of the 'exodusii' package.
2016-10-11 14:53:02 -07:00